ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PATL2_ARATH (Q56ZI2) Patellin-2 32 1.1
2DUS15_HUMAN (Q9H1R2) Dual specificity protein phosphatase 15 (EC... 30 3.1
3CBPE_HUMAN (P16870) Carboxypeptidase E precursor (EC 3.4.17.10) ... 30 4.1
4FIBP_ADE02 (P03275) Fiber protein (pIV) 29 5.3
5MUC1_YEAST (P08640) Mucin-like protein 1 precursor 29 6.9
6PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM ... 28 9.1

>PATL2_ARATH (Q56ZI2) Patellin-2|
          Length = 683

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 24/93 (25%), Positives = 35/93 (37%)
 Frame = -1

Query: 283 EVAPVAPLTACTGAVEVAPVAPLTARTGALEXXXXXXXXXXXXXXVHRKEKEEG*RVATV 104
           E  P AP+ A T   E+ P AP+T  T   E                 KE+E+   V T 
Sbjct: 198 ETKPAAPVVAETKKEEILPAAPVTTETKVEEKVVPVETTPAAPVTTETKEEEKAAPVTTE 257

Query: 103 EDDAGRGSGAPAGLELHVLPAAATHTQLERKTK 5
             +  + +      E      A   TQ++R +K
Sbjct: 258 TKEEEKAAPGETKKE----EKATASTQVKRASK 286



to top

>DUS15_HUMAN (Q9H1R2) Dual specificity protein phosphatase 15 (EC 3.1.3.48) (EC|
           3.1.3.16)
          Length = 295

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 19  LAACVWRLQA--IREARGRPARHCRGQRRLRQSPLVTPPP 132
           LAA V  L A  +REA GR A+ CR   R     L+ PPP
Sbjct: 166 LAARVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPP 205



to top

>CBPE_HUMAN (P16870) Carboxypeptidase E precursor (EC 3.4.17.10) (CPE)|
           (Carboxypeptidase H) (CPH) (Enkephalin convertase)
           (Prohormone-processing carboxypeptidase)
          Length = 476

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 16  SLAACVWRLQAIREARGRPARHCRGQRRLRQ 108
           +LAAC W L A  +  G PA   R +RRL+Q
Sbjct: 15  ALAACGWLLGAEAQEPGAPAAGMRRRRRLQQ 45



to top

>FIBP_ADE02 (P03275) Fiber protein (pIV)|
          Length = 582

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 268 APLTACTGAVEVAPVAPLTARTGAL 194
           APLT  +GA+ VA  APL   +GAL
Sbjct: 103 APLTITSGALTVATTAPLIVTSGAL 127



to top

>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 75  APLPRPASSSTVATRHPSSFSFRXXXXXXXXXXXXXXXXSRAP 203
           AP+P P+SSS + +  PSS  F                 S+ P
Sbjct: 864 APVPTPSSSSNITSSAPSSIPFSSTTESFSTGTTVTPSSSKYP 906



to top

>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 10/37 (27%)
 Frame = -1

Query: 115 VATVEDDAGRGSGAPA----------GLELHVLPAAA 35
           +A+V D  GRG G PA          GL L+++PAAA
Sbjct: 17  IASVRDGRGRGCGGPAGAALLGLSLVGLLLYLVPAAA 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,691,543
Number of Sequences: 219361
Number of extensions: 381958
Number of successful extensions: 1812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top