ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56g02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 722 bits (364), Expect = 0.0 Identities = 415/428 (96%), Gaps = 3/428 (0%) Strand = Plus / Plus Query: 9 caccacagcgagctaacttagcaagcgtgccacactccccagagatcgagcgaagatgtt 68 |||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| | Sbjct: 12 caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgagc-aagatgct 68 Query: 69 tggcgtcggctgcatcgtgagcgacctgacggggggcctccggggcgcccacctcaaggg 128 |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 69 tggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgcccacctcaaggg 128 Query: 129 ctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcat 188 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 129 ctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcccacgtcat 188 Query: 189 ggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaa 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 ggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaa 248 Query: 249 cgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtg 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 cgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtg 308 Query: 309 gctcctgccaacgaacctgccgttcaccaccaccggcgagaacaagttcgccgtcacctt 368 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 309 gctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgccgtcacctt 368 Query: 369 cgactggtcggtggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgc 428 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 369 cgactggtcggtggacaagctgggggtgccgggggccatcatcgtcaagaacaaccacgc 428 Query: 429 ctccgagt 436 |||||||| Sbjct: 429 ctccgagt 436
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 202 bits (102), Expect = 7e-49 Identities = 174/198 (87%) Strand = Plus / Plus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 42 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 101 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 102 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 161 Query: 234 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 293 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 162 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 221 Query: 294 gaacctggagcagtggct 311 || ||||||||||||||| Sbjct: 222 gagcctggagcagtggct 239 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagt 436 |||||||||||||||||||||||||||||| |||||| Sbjct: 322 ggcgccatcatcgtcaagaacaaccacgccgccgagt 358
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 202 bits (102), Expect = 7e-49 Identities = 174/198 (87%) Strand = Plus / Plus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 216 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 217 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 276 Query: 234 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 293 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 277 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 336 Query: 294 gaacctggagcagtggct 311 || ||||||||||||||| Sbjct: 337 gagcctggagcagtggct 354 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagt 436 |||||||||||||||||||||||||||||| |||||| Sbjct: 437 ggcgccatcatcgtcaagaacaaccacgccgccgagt 473
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Plus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30023360 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 30023361 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30023420 Query: 234 catcagctccaccaacgtcgacc 256 | |||||||| || |||||||| Sbjct: 30023421 cgtcagctcctccctcgtcgacc 30023443 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27798757 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27798816 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 27798817 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27798876 Query: 241 tccaccaacgtcgacc 256 |||||| |||||||| Sbjct: 27798877 tccaccgccgtcgacc 27798892 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagt 436 |||||||||||||||||||||||||||||| |||||| Sbjct: 30023659 ggcgccatcatcgtcaagaacaaccacgccgccgagt 30023695 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27799308 gggaaggtgggggcggaggcgagcctggagcagtggct 27799345 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccac 426 |||||||| || |||||||| |||||||||||||||||| ||||| Sbjct: 27799413 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccac 27799457 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30023539 gggagggtggggacggaggcgagcctggagcagtggct 30023576
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Minus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 84391 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 84390 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 84331 Query: 234 catcagctccaccaacgtcgacc 256 | |||||||| || |||||||| Sbjct: 84330 cgtcagctcctccctcgtcgacc 84308 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagt 436 |||||||||||||||||||||||||||||| |||||| Sbjct: 84092 ggcgccatcatcgtcaagaacaaccacgccgccgagt 84056 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 84212 gggagggtggggacggaggcgagcctggagcagtggct 84175
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Plus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30114782 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 30114783 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30114842 Query: 234 catcagctccaccaacgtcgacc 256 | |||||||| || |||||||| Sbjct: 30114843 cgtcagctcctccctcgtcgacc 30114865 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27890081 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27890140 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 27890141 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27890200 Query: 241 tccaccaacgtcgacc 256 |||||| |||||||| Sbjct: 27890201 tccaccgccgtcgacc 27890216 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagt 436 |||||||||||||||||||||||||||||| |||||| Sbjct: 30115081 ggcgccatcatcgtcaagaacaaccacgccgccgagt 30115117 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27890632 gggaaggtgggggcggaggcgagcctggagcagtggct 27890669 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccac 426 |||||||| || |||||||| |||||||||||||||||| ||||| Sbjct: 27890737 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccac 27890781 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30114961 gggagggtggggacggaggcgagcctggagcagtggct 30114998
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 186 bits (94), Expect = 4e-44 Identities = 172/198 (86%) Strand = Plus / Plus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 198 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| || || || ||||| |||||||||||||||||||||||||||| Sbjct: 199 cggcgccaccgtcatcgagcgcatctccgagttcctcggccgcggcgtcacctgccagct 258 Query: 234 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 293 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 259 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 318 Query: 294 gaacctggagcagtggct 311 || ||||||||||||||| Sbjct: 319 gagcctggagcagtggct 336 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagt 436 |||||||||||||||||||||||||||||| |||||| Sbjct: 419 ggcgccatcatcgtcaagaacaaccacgccgccgagt 455
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 176 bits (89), Expect = 4e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 123 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 182 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 ||| |||| |||||| || |||| |||||||| ||||||||||||||||| |||||| Sbjct: 183 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 242 Query: 241 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 300 |||||| ||||||||| ||||||| || |||||||||||||||||||||||| | ||| Sbjct: 243 tccaccgccgtcgaccaagacaacggcggtcgcgggaaggtgggcgcggaggcggagctg 302 Query: 301 gagcagtgg 309 ||||||||| Sbjct: 303 gagcagtgg 311 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 351 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 410 |||||||| | |||||||||||||| |||||| ||||| |||||||||||||||||| | Sbjct: 347 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 406 Query: 411 cgtcaagaacaaccacgcctccgagt 436 |||||| ||| ||||| |||||||| Sbjct: 407 cgtcaacaactaccacagctccgagt 432
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 172 bits (87), Expect = 6e-40 Identities = 165/191 (86%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 111 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 112 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 171 Query: 241 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 300 |||||| |||||||| |||||||| || ||||||||||| |||||||||| |||| Sbjct: 172 tccaccgccgtcgacccaaacaacggcaaccgggggaaggtgggggcggaggcgagcctg 231 Query: 301 gagcagtggct 311 ||||||||||| Sbjct: 232 gagcagtggct 242 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccac 426 |||||||| || |||||||| |||||||||||||||||| ||||| Sbjct: 310 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccac 354
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 149 bits (75), Expect = 9e-33 Identities = 162/191 (84%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 111 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 112 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 171 Query: 241 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 300 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 172 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 231 Query: 301 gagcagtggct 311 ||||||||||| Sbjct: 232 gagcagtggct 242 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 340 accggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccg 399 ||||||||| |||||||| |||||| ||||||||| |||||| |||||||| |||||| Sbjct: 265 accggcgagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccg 324 Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagt 436 || ||| || |||||||||||||||||||| |||||| Sbjct: 325 ggggccgtcgtcgtcaagaacaaccacgccgccgagt 361
>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence Length = 515 Score = 149 bits (75), Expect = 9e-33 Identities = 162/191 (84%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 114 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 173 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 174 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 233 Query: 241 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 300 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 234 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 293 Query: 301 gagcagtggct 311 ||||||||||| Sbjct: 294 gagcagtggct 304 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 340 accggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccg 399 ||||||||| |||||||| |||||| ||||||||| |||||| |||||||| |||||| Sbjct: 327 accggcgagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccg 386 Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagt 436 || ||| || |||||||||||||||||||| |||||| Sbjct: 387 ggggccgtcgtcgtcaagaacaaccacgccgccgagt 423
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 42887 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 42946 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 42947 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 43006 Query: 241 tccaccaacgtcgacc 256 |||||| |||||||| Sbjct: 43007 tccaccgccgtcgacc 43022 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 43438 gggaaggtgggggcggaggcgagcctggagcagtggct 43475 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccac 426 |||||||| || |||||||| |||||||||||||||||| ||||| Sbjct: 43543 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccac 43587
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 15136 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 15077 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 15076 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 15017 Query: 241 tccaccaacgtcgacc 256 |||||| |||||||| Sbjct: 15016 tccaccgccgtcgacc 15001 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 14585 gggaaggtgggggcggaggcgagcctggagcagtggct 14548 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccac 426 |||||||| || |||||||| |||||||||||||||||| ||||| Sbjct: 14480 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccac 14436
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 201 cgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccacaa 260 |||| |||||||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct: 153 cgagttcctcggccgcggcgtcacctgccagcttatcagctccaccgtcgtcgaccctaa 212 Query: 261 caacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||||| ||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 213 caacggcaaccgcgggaagttgggcgcggaggcgagcctggagcagtggct 263 Score = 105 bits (53), Expect = 1e-19 Identities = 83/93 (89%) Strand = Plus / Plus Query: 344 gcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcg 403 |||||||| ||||| |||||||||||||||| |||||| |||| ||| | ||||||| Sbjct: 290 gcgagaaccagttccgcgtcaccttcgactgggaggtggagaagcagggcatcccgggcg 349 Query: 404 ccatcatcgtcaagaacaaccacgcctccgagt 436 ||||||||||||||||||||||||||||||||| Sbjct: 350 ccatcatcgtcaagaacaaccacgcctccgagt 382
>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds Length = 1160 Score = 117 bits (59), Expect = 3e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 145 cgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtcaccgag 204 ||||||||||| |||||| ||||||||||||||||||||||| | | ||||| ||||| Sbjct: 1 cgcaagaacgccctcgacatcaacgacttcggcgccaccgtcctcgggcgcgtctccgag 60 Query: 205 ctcctcggccgcggcgtcacctgccagctcatcagctcc 243 ||||||||||||||||||||||||||||| |||||||| Sbjct: 61 ttcctcggccgcggcgtcacctgccagctcgtcagctcc 99
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 117 bits (59), Expect = 3e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 200 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 259 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 260 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 319 Query: 241 tccaccaacgtcgac 255 |||||| ||||||| Sbjct: 320 tccaccctcgtcgac 334 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 340 accggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccg 399 ||||||||| |||||||| |||||| ||||||||| |||||| |||||||| |||||| Sbjct: 993 accggcgagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccg 1052 Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagt 436 || ||| || |||||||||||||||||||| |||||| Sbjct: 1053 ggggccgtcgtcgtcaagaacaaccacgccgccgagt 1089 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 286 gcggaggcgaacctggagcagtggct 311 |||||||||||||||||||||||||| Sbjct: 945 gcggaggcgaacctggagcagtggct 970
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter region and partial cds Length = 5236 Score = 115 bits (58), Expect = 1e-22 Identities = 109/126 (86%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 3566 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 3625 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 ||| |||| |||||| || |||| |||||||| ||||||||||||||||| |||||| Sbjct: 3626 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 3685 Query: 241 tccacc 246 |||||| Sbjct: 3686 tccacc 3691 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 351 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 410 |||||||| | |||||||||||||| |||||| ||||| |||||||||||||||||| | Sbjct: 4340 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 4399 Query: 411 cgtcaagaacaaccacgcctccgagt 436 |||||| ||| ||||| |||||||| Sbjct: 4400 cgtcaacaactaccacagctccgagt 4425 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 260 acaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtgg 309 ||||||| || |||||||||||||||||||||||| | |||||||||||| Sbjct: 4255 acaacggcggtcgcgggaaggtgggcgcggaggcggagctggagcagtgg 4304
>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region and partial cds Length = 3196 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 341 ccggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgg 400 |||||||| || ||||| |||||||||||||||| |||||| |||| || || |||| Sbjct: 2808 ccggcgaggaccagttccgcgtcaccttcgactgggaggtggagaagcacggcgtcccgg 2867 Query: 401 gcgccatcatcgtcaagaacaaccacgcctccgagt 436 ||||||||||||| |||||||||||||||||||||| Sbjct: 2868 gcgccatcatcgtgaagaacaaccacgcctccgagt 2903 Score = 79.8 bits (40), Expect = 7e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 185 tcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctcca 244 ||||||||||| || |||| ||||||||||||||||||||||||| ||| ||||||||| Sbjct: 2387 tcatggacggcctcggcgagttcctcggccgcggcgtcacctgccaactcgtcagctcca 2446 Query: 245 ccaacgtcgacc 256 || |||||||| Sbjct: 2447 ccgtcgtcgacc 2458 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 271 cgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgc 316 |||||||||||||| |||||||| ||||||||||||||| |||| Sbjct: 2744 cgcgggaaggtgggtcaggaggcgagcctggagcagtggctgctgc 2789
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 325 ctgccgttcaccaccaccggcg 346 |||||||||||||||||||||| Sbjct: 164522 ctgccgttcaccaccaccggcg 164543
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome Length = 8803 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 153 cgcgctcgacttcaacgacttcggcg 178 ||||| |||||||||||||||||||| Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B (SHB), mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 cggggggcctccggggcgccc 118 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase mRNA, partial cds Length = 775 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 174 cggcgccaccgtcatggacggcgtcaccg 202 ||||||||| ||||||||||||| ||||| Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
>emb|X75342.1|HSSHB H.sapiens SHB mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 cggggggcctccggggcgccc 118 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 357 cgccgtcaccttcgactggtcggtggac 384 ||||| ||||||||| |||||||||||| Sbjct: 3465594 cgccggcaccttcgaatggtcggtggac 3465621
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ggtgccgggcgccatcatcg 412 |||||||||||||||||||| Sbjct: 608859 ggtgccgggcgccatcatcg 608840
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 agctcctcggccgcggcgtc 222 |||||||||||||||||||| Sbjct: 1962239 agctcctcggccgcggcgtc 1962220
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 agctcatcagctccaccaac 249 |||||||||||||||||||| Sbjct: 82121 agctcatcagctccaccaac 82102
>ref|XM_967239.1| PREDICTED: Tribolium castaneum similar to CG11980-PC, isoform C (LOC661050), mRNA Length = 1156 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 caccaacgtcgaccacaaca 262 |||||||||||||||||||| Sbjct: 239 caccaacgtcgaccacaaca 220
>gb|AC079160.5| Homo sapiens BAC clone RP11-176K15 from 4, complete sequence Length = 147727 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 acctggagcagtggctcctg 315 |||||||||||||||||||| Sbjct: 78731 acctggagcagtggctcctg 78750
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 tcggcgccaccgtcatggacggcg 196 ||||||||| |||||||||||||| Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ctgccgttcaccaccaccgg 344 |||||||||||||||||||| Sbjct: 2100202 ctgccgttcaccaccaccgg 2100221
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 tgcgcaagaacgcgctcgacttca 166 ||||||||||| |||||||||||| Sbjct: 206796 tgcgcaagaacccgctcgacttca 206773
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 189 ggacggcgtcaccgagctcctcggccgcggcg 220 ||||||||| | |||| ||||||||||||||| Sbjct: 1448865 ggacggcgtgatcgagttcctcggccgcggcg 1448834 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,468,548 Number of Sequences: 3902068 Number of extensions: 2468548 Number of successful extensions: 54592 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53804 Number of HSP's gapped (non-prelim): 780 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
