>CQ039_HUMAN (Q8IVV7) Protein C17orf39|
          Length = 300

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
 Frame = +3

Query: 93  MPVRVVDTATPSSQPSSGQDANAVQPSPP--------SCSLLTAGRCFAGTQNVSSLQKD 248
           MPVR   T  P    +S   A ++ P PP        + SLL +G  F G Q      K 
Sbjct: 84  MPVR---TECPPPAGASAASAASLIPPPPINTQQPGVATSLLYSGSKFRGHQK----SKG 136

Query: 249 EAWKVNVRIHGCDMGQGYLCGTMEALNVPLADTPVVTFWEGEIVDAK 389
            ++ V V +   D G  YLCG ++   +      + TF+EGEI+  K
Sbjct: 137 NSYDVEVVLQHVDTGNSYLCGYLKIKGLTEEYPTLTTFFEGEIISKK 183

>CQ039_MOUSE (Q9CPY6) Protein C17orf39 homolog|
          Length = 217

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
 Frame = +3

Query: 93  MPVRVVDTATPSSQPSSGQDANAVQPSPP--------SCSLLTAGRCFAGTQNVSSLQKD 248
           MPVR   T  P    +S   A ++ P PP        + SLL +G  F G Q      K 
Sbjct: 1   MPVR---TECPPPAGASTTSAASLIPPPPINTQQPGVATSLLYSGSKFRGHQK----SKG 53

Query: 249 EAWKVNVRIHGCDMGQGYLCGTMEALNVPLADTPVVTFWEGEIVDAK 389
            ++ V V +   D G  YLCG ++   +      + TF+EGEI+  K
Sbjct: 54  NSYDVEVVLQHVDTGNSYLCGYLKIKGLTEEYPTLTTFFEGEIISKK 100

>CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity factor 7|
          Length = 471

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 441 PTSSSADASHLPVKKV*F*HLLSPPPRMSPQVCRLREH*VPPSFHIN 301
           P  SS+     P   + + HL+ PPPR+ P +       +PP+ H+N
Sbjct: 246 PPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVPPPGAIPPALHLN 292

>CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity factor 7|
           (Cleavage and polyadenylation specificity factor 59 kDa
           subunit) (CPSF 59 kDa subunit) (Pre-mRNA cleavage factor
           Im 59-kDa subunit)
          Length = 471

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 441 PTSSSADASHLPVKKV*F*HLLSPPPRMSPQVCRLREH*VPPSFHIN 301
           P  SS+     P   + + HL+ PPPR+ P +       +PP+ H+N
Sbjct: 246 PPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVPPPGAIPPALHLN 292

>CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity factor 7|
          Length = 462

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 441 PTSSSADASHLPVKKV*F*HLLSPPPRMSPQVCRLREH*VPPSFHIN 301
           P  SS+     P   + + HL+ PPPR+ P +       +PP+ H+N
Sbjct: 237 PPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVPPPGAIPPALHLN 283

>GLNA3_LUPAN (P14636) Glutamine synthetase nodule isozyme (EC 6.3.1.2)|
           (Glutamate--ammonia ligase) (Fragment)
          Length = 315

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +3

Query: 105 VVDTATPSSQPSSGQDANAVQPSPPSCSLLTAGRCFAGTQNVSSLQKDEAWKVNVRIHGC 284
           + DT TPS +P      +A         +      F   Q  + LQKD  W + + + G 
Sbjct: 91  ICDTYTPSGKPIPTNKRHAAAKIFSHPDVAAEEPWFGIEQEYTLLQKDIHWPIGMALGGF 150

Query: 285 DMGQG-YLCGT 314
              QG Y CGT
Sbjct: 151 PGPQGPYYCGT 161

>MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc|
            binding protein 2) (Protein associated with Myc)
            (Pam/highwire/rpm-1 protein)
          Length = 4641

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 156  NAVQPSPPSCSLLTAGRCFAGTQNVSSLQKDEAWKVNVRIHGCDMGQ 296
            N + PSP SC++L    C  G    S  +K +  K  VR  G   G+
Sbjct: 3143 NMIFPSPGSCAVLKKKECEKGRNKKSKKEKKKKEKAEVRPRGNLFGE 3189

>X_WHV2 (P12937) Trans-activating protein X|
          Length = 141

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
 Frame = +3

Query: 117 ATPSSQPSSGQDANAVQPSPPSCSLLTAGRCF-----AGTQNVSSLQKDEAWKVNVRIHG 281
           A+ +S PS   D++      P+C    +G C      A  + + S     +W  N +   
Sbjct: 39  ASSASSPSPSDDSDLPLGRLPACFASGSGPCCLVFTCADLRTMDSTVNFVSWHANRQ--- 95

Query: 282 CDMGQGYLCGTMEALNVPLADTPVVTFWEGEIVDAKIILFLLASGRHQ 425
                  L    + L  P     ++T WE   +D ++ +FLL   RH+
Sbjct: 96  -------LGMPSKDLWTPYIKDQLLTKWEEGSIDPRLSIFLLGGCRHK 136

>YANE_SCHPO (Q10079) Hypothetical protein C3H1.14 in chromosome I|
          Length = 195

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 183 CSLLTAGRCFAGTQNVSSLQKDEAWKVNVRIHGCDMGQGYLCGTMEALNVPLADTPVVTF 362
           CS L  G  F G Q   S       +V+V I   ++ +  LCG +        +T + T+
Sbjct: 4   CSFLRNGAKFQGKQKGVS---SSTLEVHVTILHVNLAKSMLCGFIHVSYTSPNNTSLTTY 60

Query: 363 WEGEIV 380
           +E EI+
Sbjct: 61  FEAEII 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,325,045
Number of Sequences: 219361
Number of extensions: 1299872
Number of successful extensions: 3352
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3348
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)