Clone Information

BLAST Search Result

Clone Name	bastl56g01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_469295.1\| Oryza sativa (japonica cultivar-group), mRNA	335	7e-89
2	dbj\|AK059913.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	335	7e-89
3	ref\|XM_550104.1\| Oryza sativa (japonica cultivar-group), mRNA	319	4e-84
4	dbj\|AK059740.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	319	4e-84
5	gb\|AY109915.1\| Zea mays CL9762_1 mRNA sequence	198	1e-47
6	gb\|AC133335.4\| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genom...	125	1e-25
7	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	125	1e-25
8	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	125	1e-25
9	gb\|AC079889.20\| Oryza sativa chromosome 3 BAC OSJNBa0092M19 geno...	125	1e-25
10	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	101	2e-18
11	dbj\|AP003311.2\| Oryza sativa (japonica cultivar-group) genomic D...	101	2e-18
12	gb\|BT012919.1\| Lycopersicon esculentum clone 114082R, mRNA sequence	54	4e-04
13	emb\|AL365444.11\| Human DNA sequence from clone RP11-115P16 on ch...	44	0.38
14	gb\|AC138717.2\| Mus musculus BAC clone RP23-268G21 from chromosom...	42	1.5
15	gb\|AC165086.4\| Mus musculus BAC clone RP23-209B2 from chromosome...	42	1.5
16	emb\|CR788244.9\| Zebrafish DNA sequence from clone DKEY-254A16 in...	42	1.5
17	emb\|BX908749.6\| Zebrafish DNA sequence from clone DKEY-247F18 in...	42	1.5
18	gb\|AC110527.13\| Mus musculus chromosome 1, clone RP23-204H10, co...	42	1.5
19	emb\|AL929281.7\| Zebrafish DNA sequence from clone CH211-237I22, ...	42	1.5
20	gb\|DP000013.1\| Otolemur garnettii target 1 genomic scaffold	40	6.0
21	gb\|AC120539.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.0
22	gb\|AC135258.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.0
23	gb\|AC147811.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.0
24	gb\|AC150881.4\| Bos taurus BAC CH240-354J15 (Children's Hospital...	40	6.0
25	ref\|XM_655248.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	40	6.0
26	ref\|XM_448862.1\| Candida glabrata CBS138, CAGL0L02123g partial mRNA	40	6.0
27	gb\|AC113114.9\| Mus musculus chromosome 17, clone RP23-338H10, co...	40	6.0
28	gb\|AC113019.13\| Mus musculus chromosome 7, clone RP23-185A21, co...	40	6.0
29	emb\|AL596135.6\| Human DNA sequence from clone RP11-119M3 on chro...	40	6.0
30	emb\|AL391421.27\| Human DNA sequence from clone RP11-126H7 on chr...	40	6.0
31	emb\|AL355537.11\| Human DNA sequence from clone RP11-442O18 on ch...	40	6.0
32	ref\|XM_785393.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	6.0
33	emb\|Y14386.1\|ANPGAE Aspergillus niger pgaE gene	40	6.0
34	emb\|CR380958.1\| Candida glabrata strain CBS138 chromosome L comp...	40	6.0
35	gb\|AF352033.1\| Homo sapiens DLG5 gene, exons 2 through 32 and co...	40	6.0
36	dbj\|AK125684.1\| Homo sapiens cDNA FLJ43696 fis, clone TBAES2007964	40	6.0
37	gb\|AC147580.3\| Otolemur garnettii clone CH256-323C23, complete s...	40	6.0
38	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
39	gb\|AC007338.6\| Homo sapiens chromosome 16 clone RP11-283C7, comp...	40	6.0
40	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.0
41	emb\|AL627226.16\| Mouse DNA sequence from clone RP23-139P4 on chr...	40	6.0

>ref|XM_469295.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1330

 Score =  335 bits (169), Expect = 7e-89
 Identities = 301/346 (86%), Gaps = 1/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 92  gatgccggtcagggtggtcgacaccgccaccccttcctcgcagccatcctcaggtcaaga 151
           ||||||||| |||||||| |||||||| ||||||||||| ||||| || |||||||||||
Sbjct: 349 gatgccggtgagggtggtagacaccgcaaccccttcctcccagccctcatcaggtcaaga 408

                                                                       
Query: 152 tgcaaatgctgtgcagccgtctcctcctagctgttcactcttaactgctggaagatgttt 211
           ||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||| 
Sbjct: 409 tgcaaatgctgggcatccgtctcctcctagctgttccctcttaagtgctggaagatgtta 468

                                                                       
Query: 212 tgcaggaactcagaatgtttcaagtttacaaaaagatgaagcatggaaagtcaatgttcg 271
           ||| ||||| |||||||| || | | |||||||||| ||||| |||||||| ||||| ||
Sbjct: 469 tgctggaacccagaatgtctctaatatacaaaaagaagaagcttggaaagttaatgtgcg 528

                                                                       
Query: 272 tatccatggttgtgatatgggacagggttatttatgtggaacgatggaggcacttaatgt 331
            |||||||| |||||| | | ||||||||||||||||||||| ||||| |||||||||||
Sbjct: 529 gatccatggctgtgatcttgaacagggttatttatgtggaacaatggaagcacttaatgt 588

                                                                       
Query: 332 tcccttagccgacacacctgtggtgacattctgggagggggagatagtagatgct-aaaa 390
           ||||||||| || || |||||||| || |||||||||||||||||||| |||||| ||||
Sbjct: 589 tcccttagctgatacccctgtggtaacgttctgggagggggagatagtggatgctaaaaa 648

                                                         
Query: 391 ttatacnnnnnnnactggcaagtgggaggcatcagcagaggatgat 436
           ||||||       |||||||||||||| |||||  |||||||||||
Sbjct: 649 ttatacatttttcactggcaagtgggaagcatccccagaggatgat 694

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>dbj|AK059913.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D10, full
           insert sequence
          Length = 1238

 Score =  335 bits (169), Expect = 7e-89
 Identities = 301/346 (86%), Gaps = 1/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 92  gatgccggtcagggtggtcgacaccgccaccccttcctcgcagccatcctcaggtcaaga 151
           ||||||||| |||||||| |||||||| ||||||||||| ||||| || |||||||||||
Sbjct: 387 gatgccggtgagggtggtagacaccgcaaccccttcctcccagccctcatcaggtcaaga 446

                                                                       
Query: 152 tgcaaatgctgtgcagccgtctcctcctagctgttcactcttaactgctggaagatgttt 211
           ||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||| 
Sbjct: 447 tgcaaatgctgggcatccgtctcctcctagctgttccctcttaagtgctggaagatgtta 506

                                                                       
Query: 212 tgcaggaactcagaatgtttcaagtttacaaaaagatgaagcatggaaagtcaatgttcg 271
           ||| ||||| |||||||| || | | |||||||||| ||||| |||||||| ||||| ||
Sbjct: 507 tgctggaacccagaatgtctctaatatacaaaaagaagaagcttggaaagttaatgtgcg 566

                                                                       
Query: 272 tatccatggttgtgatatgggacagggttatttatgtggaacgatggaggcacttaatgt 331
            |||||||| |||||| | | ||||||||||||||||||||| ||||| |||||||||||
Sbjct: 567 gatccatggctgtgatcttgaacagggttatttatgtggaacaatggaagcacttaatgt 626

                                                                       
Query: 332 tcccttagccgacacacctgtggtgacattctgggagggggagatagtagatgct-aaaa 390
           ||||||||| || || |||||||| || |||||||||||||||||||| |||||| ||||
Sbjct: 627 tcccttagctgatacccctgtggtaacgttctgggagggggagatagtggatgctaaaaa 686

                                                         
Query: 391 ttatacnnnnnnnactggcaagtgggaggcatcagcagaggatgat 436
           ||||||       |||||||||||||| |||||  |||||||||||
Sbjct: 687 ttatacatttttcactggcaagtgggaagcatccccagaggatgat 732

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>ref|XM_550104.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1056

 Score =  319 bits (161), Expect = 4e-84
 Identities = 299/346 (86%), Gaps = 1/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 92  gatgccggtcagggtggtcgacaccgccaccccttcctcgcagccatcctcaggtcaaga 151
           |||||| || ||||||||||||||||| ||||| ||||| |||||  |||||||||||||
Sbjct: 91  gatgccagtgagggtggtcgacaccgcaaccccatcctcccagcccacctcaggtcaaga 150

                                                                       
Query: 152 tgcaaatgctgtgcagccgtctcctcctagctgttcactcttaactgctggaagatgttt 211
           ||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||| 
Sbjct: 151 tgcaaatgctgggcatccgtctcctcctagctgttccctcttaagtgctggaagatgtta 210

                                                                       
Query: 212 tgcaggaactcagaatgtttcaagtttacaaaaagatgaagcatggaaagtcaatgttcg 271
           ||| ||||| |||||||| || | | |||||||||| ||||| |||||||| ||||| ||
Sbjct: 211 tgctggaacccagaatgtctctactatacaaaaagaagaagcttggaaagttaatgtgcg 270

                                                                       
Query: 272 tatccatggttgtgatatgggacagggttatttatgtggaacgatggaggcacttaatgt 331
            ||| |||  |||||| | | ||||||||||||||||||||| ||||| ||| |||||||
Sbjct: 271 gatcaatgactgtgatcttgaacagggttatttatgtggaacaatggaagcagttaatgt 330

                                                                       
Query: 332 tcccttagccgacacacctgtggtgacattctgggagggggagatagtagatgct-aaaa 390
           ||||||||| || || |||||||| ||||||||||||||||||||||| |||||| ||||
Sbjct: 331 tcccttagctgatacccctgtggtaacattctgggagggggagatagtggatgctaaaaa 390

                                                         
Query: 391 ttatacnnnnnnnactggcaagtgggaggcatcagcagaggatgat 436
           ||||||       ||||||||||||||||||||  |||||||||||
Sbjct: 391 ttatacatttttcactggcaagtgggaggcatccccagaggatgat 436

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>dbj|AK059740.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-F03, full
           insert sequence
          Length = 1056

 Score =  319 bits (161), Expect = 4e-84
 Identities = 299/346 (86%), Gaps = 1/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 92  gatgccggtcagggtggtcgacaccgccaccccttcctcgcagccatcctcaggtcaaga 151
           |||||| || ||||||||||||||||| ||||| ||||| |||||  |||||||||||||
Sbjct: 91  gatgccagtgagggtggtcgacaccgcaaccccatcctcccagcccacctcaggtcaaga 150

                                                                       
Query: 152 tgcaaatgctgtgcagccgtctcctcctagctgttcactcttaactgctggaagatgttt 211
           ||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||| 
Sbjct: 151 tgcaaatgctgggcatccgtctcctcctagctgttccctcttaagtgctggaagatgtta 210

                                                                       
Query: 212 tgcaggaactcagaatgtttcaagtttacaaaaagatgaagcatggaaagtcaatgttcg 271
           ||| ||||| |||||||| || | | |||||||||| ||||| |||||||| ||||| ||
Sbjct: 211 tgctggaacccagaatgtctctactatacaaaaagaagaagcttggaaagttaatgtgcg 270

                                                                       
Query: 272 tatccatggttgtgatatgggacagggttatttatgtggaacgatggaggcacttaatgt 331
            ||| |||  |||||| | | ||||||||||||||||||||| ||||| ||| |||||||
Sbjct: 271 gatcaatgactgtgatcttgaacagggttatttatgtggaacaatggaagcagttaatgt 330

                                                                       
Query: 332 tcccttagccgacacacctgtggtgacattctgggagggggagatagtagatgct-aaaa 390
           ||||||||| || || |||||||| ||||||||||||||||||||||| |||||| ||||
Sbjct: 331 tcccttagctgatacccctgtggtaacattctgggagggggagatagtggatgctaaaaa 390

                                                         
Query: 391 ttatacnnnnnnnactggcaagtgggaggcatcagcagaggatgat 436
           ||||||       ||||||||||||||||||||  |||||||||||
Sbjct: 391 ttatacatttttcactggcaagtgggaggcatccccagaggatgat 436

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>gb|AY109915.1| Zea mays CL9762_1 mRNA sequence
          Length = 1139

 Score =  198 bits (100), Expect = 1e-47
 Identities = 166/188 (88%)
 Strand = Plus / Minus

                                                                       
Query: 171 tctcctcctagctgttcactcttaactgctggaagatgttttgcaggaactcagaatgtt 230
           ||||||||||||||||||||||||| ||||||||||| |||||| || ||||| ||||||
Sbjct: 839 tctcctcctagctgttcactcttaagtgctggaagatcttttgctgggactcaaaatgtt 780

                                                                       
Query: 231 tcaagtttacaaaaagatgaagcatggaaagtcaatgttcgtatccatggttgtgatatg 290
           |||||  | || || ||||||||||||||||| ||||| || ||||||||||||||| | 
Sbjct: 779 tcaagcctgcagaaggatgaagcatggaaagtgaatgtacgcatccatggttgtgatctt 720

                                                                       
Query: 291 ggacagggttatttatgtggaacgatggaggcacttaatgttcccttagccgacacacct 350
           | ||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 719 gaacagggttatttatgtggaacgatggaagcgcttaatgttccattagcagatacacct 660

                   
Query: 351 gtggtgac 358
           || |||||
Sbjct: 659 gttgtgac 652



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 404 actggcaagtgggaggcatcagcagaggatgat 436
           ||||| ||||||||||||||| |||| ||||||
Sbjct: 605 actggaaagtgggaggcatcaccagatgatgat 573

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>gb|AC133335.4| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genomic sequence, complete
             sequence
          Length = 55268

 Score =  125 bits (63), Expect = 1e-25
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                         
Query: 207   tgttttgcaggaactcagaatgtttcaagtttacaaaaagatgaagcatggaaagtcaat 266
             |||| ||| ||||| |||||||| || | | |||||||||| ||||| |||||||| |||
Sbjct: 15562 tgttatgctggaacccagaatgtctctaatatacaaaaagaagaagcttggaaagttaat 15503

                                                                         
Query: 267   gttcgtatccatggttgtgatatgggacagggttatttatgtggaacgatggaggcactt 326
             || || |||||||| |||||| | | ||||||||||||||||||||| ||||| ||||||
Sbjct: 15502 gtgcggatccatggctgtgatcttgaacagggttatttatgtggaacaatggaagcactt 15443

                                        
Query: 327   aatgttcccttagccgacacacctgtg 353
             |||||||||||||| || || ||||||
Sbjct: 15442 aatgttcccttagctgatacccctgtg 15416



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Minus

                                                                         
Query: 142   caggtcaagatgcaaatgctgtgcagccgtctcctcctagctgttcactcttaactgctg 201
             ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||
Sbjct: 15726 caggtcaagatgcaaatgctgggcatccgtctcctcctagctgttccctcttaagtgctg 15667

                  
Query: 202   gaaga 206
             |||||
Sbjct: 15666 gaaga 15662



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 92    gatgccggtcagggtggtcgacaccgccaccccttcctcgcagccatcctcaggt 146
             ||||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||
Sbjct: 16259 gatgccggtgagggtggtagacaccgcaaccccttcctcccagccctcatcaggt 16205



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/74 (83%), Gaps = 1/74 (1%)
 Strand = Plus / Minus

                                                                         
Query: 351   gtggtgacattctgggagggggagatagtagatgct-aaaattatacnnnnnnnactggc 409
             ||||| || |||||||||||||||||||| |||||| ||||||||||       ||||||
Sbjct: 15183 gtggtaacgttctgggagggggagatagtggatgctaaaaattatacatttttcactggc 15124

                           
Query: 410   aagtgggaggcatc 423
             |||||||| |||||
Sbjct: 15123 aagtgggaagcatc 15110

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  125 bits (63), Expect = 1e-25
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                            
Query: 207      tgttttgcaggaactcagaatgtttcaagtttacaaaaagatgaagcatggaaagtcaat 266
                |||| ||| ||||| |||||||| || | | |||||||||| ||||| |||||||| |||
Sbjct: 26595844 tgttatgctggaacccagaatgtctctaatatacaaaaagaagaagcttggaaagttaat 26595785

                                                                            
Query: 267      gttcgtatccatggttgtgatatgggacagggttatttatgtggaacgatggaggcactt 326
                || || |||||||| |||||| | | ||||||||||||||||||||| ||||| ||||||
Sbjct: 26595784 gtgcggatccatggctgtgatcttgaacagggttatttatgtggaacaatggaagcactt 26595725

                                           
Query: 327      aatgttcccttagccgacacacctgtg 353
                |||||||||||||| || || ||||||
Sbjct: 26595724 aatgttcccttagctgatacccctgtg 26595698



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Minus

                                                                            
Query: 142      caggtcaagatgcaaatgctgtgcagccgtctcctcctagctgttcactcttaactgctg 201
                ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||
Sbjct: 26596008 caggtcaagatgcaaatgctgggcatccgtctcctcctagctgttccctcttaagtgctg 26595949

                     
Query: 202      gaaga 206
                |||||
Sbjct: 26595948 gaaga 26595944



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                       
Query: 92       gatgccggtcagggtggtcgacaccgccaccccttcctcgcagccatcctcaggt 146
                ||||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||
Sbjct: 26596541 gatgccggtgagggtggtagacaccgcaaccccttcctcccagccctcatcaggt 26596487



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/74 (83%), Gaps = 1/74 (1%)
 Strand = Plus / Minus

                                                                            
Query: 351      gtggtgacattctgggagggggagatagtagatgct-aaaattatacnnnnnnnactggc 409
                ||||| || |||||||||||||||||||| |||||| ||||||||||       ||||||
Sbjct: 26595465 gtggtaacgttctgggagggggagatagtggatgctaaaaattatacatttttcactggc 26595406

                              
Query: 410      aagtgggaggcatc 423
                |||||||| |||||
Sbjct: 26595405 aagtgggaagcatc 26595392

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  125 bits (63), Expect = 1e-25
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                            
Query: 207      tgttttgcaggaactcagaatgtttcaagtttacaaaaagatgaagcatggaaagtcaat 266
                |||| ||| ||||| |||||||| || | | |||||||||| ||||| |||||||| |||
Sbjct: 26687167 tgttatgctggaacccagaatgtctctaatatacaaaaagaagaagcttggaaagttaat 26687108

                                                                            
Query: 267      gttcgtatccatggttgtgatatgggacagggttatttatgtggaacgatggaggcactt 326
                || || |||||||| |||||| | | ||||||||||||||||||||| ||||| ||||||
Sbjct: 26687107 gtgcggatccatggctgtgatcttgaacagggttatttatgtggaacaatggaagcactt 26687048

                                           
Query: 327      aatgttcccttagccgacacacctgtg 353
                |||||||||||||| || || ||||||
Sbjct: 26687047 aatgttcccttagctgatacccctgtg 26687021



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Minus

                                                                            
Query: 142      caggtcaagatgcaaatgctgtgcagccgtctcctcctagctgttcactcttaactgctg 201
                ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||
Sbjct: 26687331 caggtcaagatgcaaatgctgggcatccgtctcctcctagctgttccctcttaagtgctg 26687272

                     
Query: 202      gaaga 206
                |||||
Sbjct: 26687271 gaaga 26687267



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                       
Query: 92       gatgccggtcagggtggtcgacaccgccaccccttcctcgcagccatcctcaggt 146
                ||||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||
Sbjct: 26687864 gatgccggtgagggtggtagacaccgcaaccccttcctcccagccctcatcaggt 26687810



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/74 (83%), Gaps = 1/74 (1%)
 Strand = Plus / Minus

                                                                            
Query: 351      gtggtgacattctgggagggggagatagtagatgct-aaaattatacnnnnnnnactggc 409
                ||||| || |||||||||||||||||||| |||||| ||||||||||       ||||||
Sbjct: 26686788 gtggtaacgttctgggagggggagatagtggatgctaaaaattatacatttttcactggc 26686729

                              
Query: 410      aagtgggaggcatc 423
                |||||||| |||||
Sbjct: 26686728 aagtgggaagcatc 26686715

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>gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 genomic sequence, complete
              sequence
          Length = 136712

 Score =  125 bits (63), Expect = 1e-25
 Identities = 126/147 (85%)
 Strand = Plus / Minus

                                                                          
Query: 207    tgttttgcaggaactcagaatgtttcaagtttacaaaaagatgaagcatggaaagtcaat 266
              |||| ||| ||||| |||||||| || | | |||||||||| ||||| |||||||| |||
Sbjct: 118658 tgttatgctggaacccagaatgtctctaatatacaaaaagaagaagcttggaaagttaat 118599

                                                                          
Query: 267    gttcgtatccatggttgtgatatgggacagggttatttatgtggaacgatggaggcactt 326
              || || |||||||| |||||| | | ||||||||||||||||||||| ||||| ||||||
Sbjct: 118598 gtgcggatccatggctgtgatcttgaacagggttatttatgtggaacaatggaagcactt 118539

                                         
Query: 327    aatgttcccttagccgacacacctgtg 353
              |||||||||||||| || || ||||||
Sbjct: 118538 aatgttcccttagctgatacccctgtg 118512



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Minus

                                                                          
Query: 142    caggtcaagatgcaaatgctgtgcagccgtctcctcctagctgttcactcttaactgctg 201
              ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||
Sbjct: 118822 caggtcaagatgcaaatgctgggcatccgtctcctcctagctgttccctcttaagtgctg 118763

                   
Query: 202    gaaga 206
              |||||
Sbjct: 118762 gaaga 118758



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                     
Query: 92     gatgccggtcagggtggtcgacaccgccaccccttcctcgcagccatcctcaggt 146
              ||||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||
Sbjct: 119355 gatgccggtgagggtggtagacaccgcaaccccttcctcccagccctcatcaggt 119301



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/74 (83%), Gaps = 1/74 (1%)
 Strand = Plus / Minus

                                                                          
Query: 351    gtggtgacattctgggagggggagatagtagatgct-aaaattatacnnnnnnnactggc 409
              ||||| || |||||||||||||||||||| |||||| ||||||||||       ||||||
Sbjct: 118279 gtggtaacgttctgggagggggagatagtggatgctaaaaattatacatttttcactggc 118220

                            
Query: 410    aagtgggaggcatc 423
              |||||||| |||||
Sbjct: 118219 aagtgggaagcatc 118206

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  101 bits (51), Expect = 2e-18
 Identities = 123/147 (83%)
 Strand = Plus / Plus

                                                                           
Query: 207     tgttttgcaggaactcagaatgtttcaagtttacaaaaagatgaagcatggaaagtcaat 266
               |||| ||| ||||| |||||||| || | | |||||||||| ||||| |||||||| |||
Sbjct: 2386177 tgttatgctggaacccagaatgtctctactatacaaaaagaagaagcttggaaagttaat 2386236

                                                                           
Query: 267     gttcgtatccatggttgtgatatgggacagggttatttatgtggaacgatggaggcactt 326
               || || ||| |||  |||||| | | ||||||||||||||||||||| ||||| ||| ||
Sbjct: 2386237 gtgcggatcaatgactgtgatcttgaacagggttatttatgtggaacaatggaagcagtt 2386296

                                          
Query: 327     aatgttcccttagccgacacacctgtg 353
               |||||||||||||| || || ||||||
Sbjct: 2386297 aatgttcccttagctgatacccctgtg 2386323



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Plus

                                                                           
Query: 142     caggtcaagatgcaaatgctgtgcagccgtctcctcctagctgttcactcttaactgctg 201
               ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||
Sbjct: 2386007 caggtcaagatgcaaatgctgggcatccgtctcctcctagctgttccctcttaagtgctg 2386066

                    
Query: 202     gaaga 206
               |||||
Sbjct: 2386067 gaaga 2386071



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/74 (86%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                           
Query: 351     gtggtgacattctgggagggggagatagtagatgct-aaaattatacnnnnnnnactggc 409
               ||||| ||||||||||||||||||||||| |||||| ||||||||||       ||||||
Sbjct: 2386496 gtggtaacattctgggagggggagatagtggatgctaaaaattatacatttttcactggc 2386555

                             
Query: 410     aagtgggaggcatc 423
               ||||||||||||||
Sbjct: 2386556 aagtgggaggcatc 2386569



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                      
Query: 92      gatgccggtcagggtggtcgacaccgccaccccttcctcgcagccatcctcaggt 146
               |||||| || ||||||||||||||||| ||||| ||||| |||||  ||||||||
Sbjct: 2385463 gatgccagtgagggtggtcgacaccgcaaccccatcctcccagcccacctcaggt 2385517

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>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0024G09
          Length = 175565

 Score =  101 bits (51), Expect = 2e-18
 Identities = 123/147 (83%)
 Strand = Plus / Plus

                                                                          
Query: 207    tgttttgcaggaactcagaatgtttcaagtttacaaaaagatgaagcatggaaagtcaat 266
              |||| ||| ||||| |||||||| || | | |||||||||| ||||| |||||||| |||
Sbjct: 115227 tgttatgctggaacccagaatgtctctactatacaaaaagaagaagcttggaaagttaat 115286

                                                                          
Query: 267    gttcgtatccatggttgtgatatgggacagggttatttatgtggaacgatggaggcactt 326
              || || ||| |||  |||||| | | ||||||||||||||||||||| ||||| ||| ||
Sbjct: 115287 gtgcggatcaatgactgtgatcttgaacagggttatttatgtggaacaatggaagcagtt 115346

                                         
Query: 327    aatgttcccttagccgacacacctgtg 353
              |||||||||||||| || || ||||||
Sbjct: 115347 aatgttcccttagctgatacccctgtg 115373



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 61/65 (93%)
 Strand = Plus / Plus

                                                                          
Query: 142    caggtcaagatgcaaatgctgtgcagccgtctcctcctagctgttcactcttaactgctg 201
              ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||
Sbjct: 115057 caggtcaagatgcaaatgctgggcatccgtctcctcctagctgttccctcttaagtgctg 115116

                   
Query: 202    gaaga 206
              |||||
Sbjct: 115117 gaaga 115121



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/74 (86%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                          
Query: 351    gtggtgacattctgggagggggagatagtagatgct-aaaattatacnnnnnnnactggc 409
              ||||| ||||||||||||||||||||||| |||||| ||||||||||       ||||||
Sbjct: 115546 gtggtaacattctgggagggggagatagtggatgctaaaaattatacatttttcactggc 115605

                            
Query: 410    aagtgggaggcatc 423
              ||||||||||||||
Sbjct: 115606 aagtgggaggcatc 115619



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 92     gatgccggtcagggtggtcgacaccgccaccccttcctcgcagccatcctcaggt 146
              |||||| || ||||||||||||||||| ||||| ||||| |||||  ||||||||
Sbjct: 114513 gatgccagtgagggtggtcgacaccgcaaccccatcctcccagcccacctcaggt 114567

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>gb|BT012919.1| Lycopersicon esculentum clone 114082R, mRNA sequence
          Length = 925

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 216 ggaactcagaatgtttcaagtttacaaaaagatgaagcatggaaagtcaatgttcgtatc 275
           ||||||||||| ||||| |||   |||||||||||||| |||| ||| ||||| ||||| 
Sbjct: 131 ggaactcagaacgtttcgagtcagcaaaaagatgaagcttggagagtaaatgtgcgtatt 190

                      
Query: 276 catggttgtga 286
           || ||||||||
Sbjct: 191 cagggttgtga 201

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>emb|AL365444.11| Human DNA sequence from clone RP11-115P16 on chromosome 1 Contains the 3'
              UTR of a novel gene (DKFZp761P211), the ITPKB gene for
              inositol 1,4,5-trisphosphate 3-kinase B, two novel genes, a
              ribosomal protein S27 (metallopanstimulin 1) (RPS27)
              pseudogene and a CpG island, complete sequence
          Length = 181144

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 117    gccaccccttcctcgcagccatcctc 142
              |||||||| |||||||||||||||||
Sbjct: 151085 gccaccccctcctcgcagccatcctc 151060

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>gb|AC138717.2| Mus musculus BAC clone RP23-268G21 from chromosome 7, complete sequence
          Length = 141977

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 138   tcctcaggtcaagatgcaaat 158
             |||||||||||||||||||||
Sbjct: 43945 tcctcaggtcaagatgcaaat 43925

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>gb|AC165086.4| Mus musculus BAC clone RP23-209B2 from chromosome 7, complete sequence
          Length = 195905

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 138   tcctcaggtcaagatgcaaat 158
             |||||||||||||||||||||
Sbjct: 53578 tcctcaggtcaagatgcaaat 53598

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>emb|CR788244.9| Zebrafish DNA sequence from clone DKEY-254A16 in linkage group 18,
              complete sequence
          Length = 208154

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 207    tgttttgcaggaactcagaatgttt 231
              ||||||||||||| |||||||||||
Sbjct: 183532 tgttttgcaggaattcagaatgttt 183508

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>emb|BX908749.6| Zebrafish DNA sequence from clone DKEY-247F18 in linkage group 18,
              complete sequence
          Length = 186014

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 207    tgttttgcaggaactcagaatgttt 231
              ||||||||||||| |||||||||||
Sbjct: 183664 tgttttgcaggaattcagaatgttt 183640

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>gb|AC110527.13| Mus musculus chromosome 1, clone RP23-204H10, complete sequence
          Length = 173497

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 227    tgtttcaagtttacaaaaaga 247
              |||||||||||||||||||||
Sbjct: 113053 tgtttcaagtttacaaaaaga 113033

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>emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, complete sequence
          Length = 148678

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 207    tgttttgcaggaactcagaatgttt 231
              ||||||||||||| |||||||||||
Sbjct: 128897 tgttttgcaggaattcagaatgttt 128873

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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    gttttgcaggaactcagaat 227
              ||||||||||||||||||||
Sbjct: 903232 gttttgcaggaactcagaat 903213

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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09
              map S1559, complete sequence
          Length = 190721

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 121    ccccttcctcgcagccatcctcag 144
              |||||||||||| |||||||||||
Sbjct: 182666 ccccttcctcgcggccatcctcag 182689

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>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 297   ggttatttatgtggaacgatggaggcacttaatgttcccttagc 340
             |||||||| | || ||| ||||| |||||| |||||||||||||
Sbjct: 37479 ggttatttgtttgaaacaatggaagcacttgatgttcccttagc 37436

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>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 297   ggttatttatgtggaacgatggaggcacttaatgttcccttagc 340
             |||||||| | || ||| ||||| |||||| |||||||||||||
Sbjct: 58296 ggttatttgtttgaaacaatggaagcacttgatgttcccttagc 58339

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>gb|AC150881.4| Bos taurus  BAC CH240-354J15 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 174996

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   tttgcaggaactcagaatgt 229
             ||||||||||||||||||||
Sbjct: 53271 tttgcaggaactcagaatgt 53252

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>ref|XM_655248.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2736.2), mRNA
          Length = 2496

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  tggaagatgttttgcaggaa 219
            ||||||||||||||||||||
Sbjct: 1748 tggaagatgttttgcaggaa 1729

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>ref|XM_448862.1| Candida glabrata CBS138, CAGL0L02123g partial mRNA
          Length = 3093

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 255  tggaaagtcaatgttcgtatccat 278
            ||||||||||||||| ||||||||
Sbjct: 2211 tggaaagtcaatgttagtatccat 2234

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>gb|AC113114.9| Mus musculus chromosome 17, clone RP23-338H10, complete sequence
          Length = 183828

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   acaaaaagatgaagcatgga 258
             ||||||||||||||||||||
Sbjct: 23183 acaaaaagatgaagcatgga 23164

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>gb|AC113019.13| Mus musculus chromosome 7, clone RP23-185A21, complete sequence
          Length = 215975

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   actcttaactgctggaagat 207
             ||||||||||||||||||||
Sbjct: 68678 actcttaactgctggaagat 68659

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>emb|AL596135.6| Human DNA sequence from clone RP11-119M3 on chromosome 10 Contains part
             of the GRID1 gene for glutamate receptor (ionotropic)
             delta 1, complete sequence
          Length = 26626

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 410   aagtgggaggcatcagcaga 429
             ||||||||||||||||||||
Sbjct: 10075 aagtgggaggcatcagcaga 10094

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>emb|AL391421.27| Human DNA sequence from clone RP11-126H7 on chromosome 10 Contains the
             5' end of the DLG5 gene for discs large (Drosophila)
             homolog 5 (DLG5) (P-dlg, KIAA0583), a H2A histone family
             member Z (H2AFZ) pseudogene, a novel gene, the 3' end of
             the gene for polymerase (RNA) III (DNA directed) (155kD)
             (RPC155) and a CpG island, complete sequence
          Length = 168239

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   tgacattctgggagggggag 374
             ||||||||||||||||||||
Sbjct: 62617 tgacattctgggagggggag 62598

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>emb|AL355537.11| Human DNA sequence from clone RP11-442O18 on chromosome 10 Contains
             three novel genes, complete sequence
          Length = 188728

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   atagtagatgctaaaattat 394
             ||||||||||||||||||||
Sbjct: 14899 atagtagatgctaaaattat 14880

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>ref|XM_785393.1| PREDICTED: Strongylocentrotus purpuratus similar to two AAA domain
           containing protein (LOC585573), partial mRNA
          Length = 1141

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 14  cgccgcactccttctcgaaa 33
           ||||||||||||||||||||
Sbjct: 454 cgccgcactccttctcgaaa 435

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>emb|Y14386.1|ANPGAE Aspergillus niger pgaE gene
          Length = 3021

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tgtggtgacattctgggagg 369
           ||||||||||||||||||||
Sbjct: 516 tgtggtgacattctgggagg 535

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>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence
          Length = 1440588

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 255    tggaaagtcaatgttcgtatccat 278
              ||||||||||||||| ||||||||
Sbjct: 247204 tggaaagtcaatgttagtatccat 247181

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>gb|AF352033.1| Homo sapiens DLG5 gene, exons 2 through 32 and complete cds
          Length = 82500

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  tgacattctgggagggggag 374
            ||||||||||||||||||||
Sbjct: 4565 tgacattctgggagggggag 4584

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>dbj|AK125684.1| Homo sapiens cDNA FLJ43696 fis, clone TBAES2007964
          Length = 1922

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 355 tgacattctgggagggggag 374
           ||||||||||||||||||||
Sbjct: 774 tgacattctgggagggggag 755

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>gb|AC147580.3| Otolemur garnettii clone CH256-323C23, complete sequence
          Length = 184036

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   gttttgcaggaactcagaat 227
             ||||||||||||||||||||
Sbjct: 17124 gttttgcaggaactcagaat 17105

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                           
Query: 297     ggttatttatgtggaacgatggaggcacttaatgttcccttagc 340
               |||||||| | || ||| ||||| |||||| |||||||||||||
Sbjct: 7145076 ggttatttgtttgaaacaatggaagcacttgatgttcccttagc 7145119



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 121     ccccttcctcgcagccatcctcag 144
               |||||||||||| |||||||||||
Sbjct: 3814994 ccccttcctcgcggccatcctcag 3815017

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>gb|AC007338.6| Homo sapiens chromosome 16 clone RP11-283C7, complete sequence
          Length = 185281

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   tttcaagtttacaaaaagat 248
             ||||||||||||||||||||
Sbjct: 31021 tttcaagtttacaaaaagat 31040

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                           
Query: 297     ggttatttatgtggaacgatggaggcacttaatgttcccttagc 340
               |||||||| | || ||| ||||| |||||| |||||||||||||
Sbjct: 7211047 ggttatttgtttgaaacaatggaagcacttgatgttcccttagc 7211090



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 121     ccccttcctcgcagccatcctcag 144
               |||||||||||| |||||||||||
Sbjct: 3823688 ccccttcctcgcggccatcctcag 3823711

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>emb|AL627226.16| Mouse DNA sequence from clone RP23-139P4 on chromosome 4, complete
             sequence
          Length = 90450

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   tgggagggggagatagtaga 382
             ||||||||||||||||||||
Sbjct: 32543 tgggagggggagatagtaga 32524


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,600,496
Number of Sequences: 3902068
Number of extensions: 3600496
Number of successful extensions: 70003
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69663
Number of HSP's gapped (non-prelim): 330
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result