ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56f12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Minus Query: 76 cagcccatggcgccgcccagctcgccg 102 |||||||||||||||||| |||||||| Sbjct: 1132603 cagcccatggcgccgccctgctcgccg 1132577
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Plus Query: 101 cgccctcggccgccgcgccgtcgcggg 127 ||||||||||||| ||||||||||||| Sbjct: 4755235 cgccctcggccgcggcgccgtcgcggg 4755261 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 gcctcggtcaccaagcgcccccgca 208 |||||||||||||||||||| |||| Sbjct: 419525 gcctcggtcaccaagcgcccgcgca 419549
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 98 cgccgccctcggccgccgcgccgtcg 123 ||||| |||||||||||||||||||| Sbjct: 3150161 cgccggcctcggccgccgcgccgtcg 3150186
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 98 cgccgccctcggccgccgcgccgtcg 123 ||||| |||||||||||||||||||| Sbjct: 1650945 cgccggcctcggccgccgcgccgtcg 1650920 Score = 42.1 bits (21), Expect = 0.97 Identities = 27/29 (93%) Strand = Plus / Minus Query: 98 cgccgccctcggccgccgcgccgtcgcgg 126 ||||||||||| ||||| ||||||||||| Sbjct: 1628863 cgccgccctcgcccgccccgccgtcgcgg 1628835
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 98 cgccgccctcggccgccgcgccgtcg 123 ||||| |||||||||||||||||||| Sbjct: 1537951 cgccggcctcggccgccgcgccgtcg 1537926
>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome Length = 156789 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 gctcgccgccctcggccgccgc 116 |||||||||||||||||||||| Sbjct: 17321 gctcgccgccctcggccgccgc 17342
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Minus Query: 75 ccagcccatggcgccgcccagctcgccgcc 104 |||||||||||| ||| ||||||||||||| Sbjct: 21608689 ccagcccatggcaccggccagctcgccgcc 21608660
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 ggcgcccaaggccgccaagaag 258 |||||||||||||||||||||| Sbjct: 3219219 ggcgcccaaggccgccaagaag 3219240
>gb|AE004685.1| Pseudomonas aeruginosa PAO1, section 246 of 529 of the complete genome Length = 10222 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 105 ctcggccgccgcgccgtcgcggggct 130 |||||||||||||||||||| ||||| Sbjct: 8526 ctcggccgccgcgccgtcgccgggct 8551
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1103G11 Length = 182931 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 ggcgcccaaggccgccaagaag 258 |||||||||||||||||||||| Sbjct: 91406 ggcgcccaaggccgccaagaag 91427
>dbj|AK108630.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-F01, full insert sequence Length = 1915 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Minus Query: 75 ccagcccatggcgccgcccagctcgccgcc 104 |||||||||||| ||| ||||||||||||| Sbjct: 746 ccagcccatggcaccggccagctcgccgcc 717
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Plus Query: 152 ccgccaaggccgcgcccgaggccgaccagg 181 ||||| ||||||||| |||||||||||||| Sbjct: 3165048 ccgcccaggccgcgcgcgaggccgaccagg 3165077
>dbj|AB096160.1| Cercopithecine herpesvirus 1 DNA, UL region, complete sequence Length = 106873 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 gctcgccgccctcggccgccgc 116 |||||||||||||||||||||| Sbjct: 8382 gctcgccgccctcggccgccgc 8403
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Minus Query: 75 ccagcccatggcgccgcccagctcgccgcc 104 |||||||||||| ||| ||||||||||||| Sbjct: 21537010 ccagcccatggcaccggccagctcgccgcc 21536981
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158019 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Plus Query: 75 ccagcccatggcgccgcccagctcgccgcc 104 |||||||||||| ||| ||||||||||||| Sbjct: 37200 ccagcccatggcaccggccagctcgccgcc 37229
>gb|U07344.1|SGU07344 Streptomyces griseus NRRL B-2682 cell division protein FtsZ (ftsZ) gene, complete cds Length = 3018 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 89 cgcccagctcgccgccctcggc 110 |||||||||||||||||||||| Sbjct: 2732 cgcccagctcgccgccctcggc 2753
>gb|BC044642.1| Homo sapiens membrane associated DNA binding protein, mRNA (cDNA clone MGC:52176 IMAGE:5455191), complete cds Length = 3092 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 gccgcgccgtcgcggggctcc 132 ||||||||||||||||||||| Sbjct: 47 gccgcgccgtcgcggggctcc 67
>ref|NM_192795.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2124 Score = 42.1 bits (21), Expect = 0.97 Identities = 36/41 (87%) Strand = Plus / Plus Query: 85 gcgccgcccagctcgccgccctcggccgccgcgccgtcgcg 125 |||||||| |||||||| ||||||||||| ||||| |||| Sbjct: 764 gcgccgccgcgctcgccggcctcggccgcctcgccgacgcg 804
>gb|AY196994.1| Streptomyces griseoruber heda cluster, complete sequence Length = 45603 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 cggccgccgcgccgtcgcggg 127 ||||||||||||||||||||| Sbjct: 7712 cggccgccgcgccgtcgcggg 7732
>gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0708D12, complete sequence Length = 172647 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 98 cgccgccctcggccgccgcgccgtc 122 |||||||||| |||||||||||||| Sbjct: 119549 cgccgccctccgccgccgcgccgtc 119525
>ref|XM_859016.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 6 (LOC491344), mRNA Length = 4005 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 gccgcgccgtcgcggggctcc 132 ||||||||||||||||||||| Sbjct: 122 gccgcgccgtcgcggggctcc 142
>ref|XM_858991.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 5 (LOC491344), mRNA Length = 3873 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 gccgcgccgtcgcggggctcc 132 ||||||||||||||||||||| Sbjct: 173 gccgcgccgtcgcggggctcc 193
>ref|XM_858975.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 4 (LOC491344), mRNA Length = 1004 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 gccgcgccgtcgcggggctcc 132 ||||||||||||||||||||| Sbjct: 173 gccgcgccgtcgcggggctcc 193
>ref|XM_858958.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 3 (LOC491344), mRNA Length = 1616 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 gccgcgccgtcgcggggctcc 132 ||||||||||||||||||||| Sbjct: 122 gccgcgccgtcgcggggctcc 142
>ref|XM_846476.1| PREDICTED: Canis familiaris similar to membrane associated DNA binding protein, transcript variant 2 (LOC491344), mRNA Length = 4358 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 gccgcgccgtcgcggggctcc 132 ||||||||||||||||||||| Sbjct: 173 gccgcgccgtcgcggggctcc 193
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 ggcgccgcccagctcgccgccctcg 108 ||||||| ||||||||||||||||| Sbjct: 52226 ggcgccgaccagctcgccgccctcg 52202
>emb|AL833177.1|HSM804488 Homo sapiens mRNA; cDNA DKFZp667B165 (from clone DKFZp667B165) Length = 5762 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 gccgcgccgtcgcggggctcc 132 ||||||||||||||||||||| Sbjct: 54 gccgcgccgtcgcggggctcc 74
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 92 ccagctcgccgccctcggccgccgcgccgtcgc 124 ||||| |||||||| ||||||||||| |||||| Sbjct: 16605390 ccagcacgccgcccccggccgccgcggcgtcgc 16605358
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 98 cgccgccctcggccgccgcgccgtc 122 |||||||||| |||||||||||||| Sbjct: 6289194 cgccgccctccgccgccgcgccgtc 6289170
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.97 Identities = 36/41 (87%) Strand = Plus / Plus Query: 85 gcgccgcccagctcgccgccctcggccgccgcgccgtcgcg 125 |||||||| |||||||| ||||||||||| ||||| |||| Sbjct: 24457911 gcgccgccgcgctcgccggcctcggccgcctcgccgacgcg 24457951
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 ggccgcgcccgaggccgacca 179 ||||||||||||||||||||| Sbjct: 4932304 ggccgcgcccgaggccgacca 4932284 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 90 gcccagctcgccgccctcggccgcc 114 ||||| ||||||||||||||||||| Sbjct: 3814173 gcccacctcgccgccctcggccgcc 3814149
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 42.1 bits (21), Expect = 0.97 Identities = 36/41 (87%) Strand = Plus / Plus Query: 85 gcgccgcccagctcgccgccctcggccgccgcgccgtcgcg 125 |||||||| |||||||| ||||||||||| ||||| |||| Sbjct: 38295 gcgccgccgcgctcgccggcctcggccgcctcgccgacgcg 38335
>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1596_C06 Length = 124721 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 92 ccagctcgccgccctcggccgccgcgccgtcgc 124 ||||| |||||||| ||||||||||| |||||| Sbjct: 13529 ccagcacgccgcccccggccgccgcggcgtcgc 13497
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 86 cgccgcccagctcgccgccctcggc 110 ||||||||||||||||||| ||||| Sbjct: 1660668 cgccgcccagctcgccgccgtcggc 1660692
>gb|AF497508.1| Zea mays galactinol synthase 2 mRNA, complete cds Length = 1481 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 cggcctccgccaaggccgcgc 166 ||||||||||||||||||||| Sbjct: 1118 cggcctccgccaaggccgcgc 1098
>gb|AC007066.4|AC007066 Homo sapiens chromosome 9, clone hRPK.355_O_1, complete sequence Length = 190815 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 gccgcgccgtcgcggggctcc 132 ||||||||||||||||||||| Sbjct: 139666 gccgcgccgtcgcggggctcc 139686
>ref|NM_194515.1| Oryza sativa (japonica cultivar-group) putative DNA cytosine methyltransferase MET2a (OSJNBa0071K19.15), mRNA Length = 2160 Score = 40.1 bits (20), Expect = 3.8 Identities = 56/68 (82%) Strand = Plus / Plus Query: 89 cgcccagctcgccgccctcggccgccgcgccgtcgcggggctcctcgcgcaagcgcacgg 148 |||||||||| ||| |||| ||||||||||| |||| |||| |||| |||||| | | Sbjct: 5 cgcccagctccccgtcctccgccgccgcgcccacgcgtacctccacgcgtaagcgcgccg 64 Query: 149 cctccgcc 156 |||||||| Sbjct: 65 cctccgcc 72
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 40.1 bits (20), Expect = 3.8 Identities = 56/68 (82%) Strand = Plus / Minus Query: 89 cgcccagctcgccgccctcggccgccgcgccgtcgcggggctcctcgcgcaagcgcacgg 148 |||||||||| ||| |||| ||||||||||| |||| |||| |||| |||||| | | Sbjct: 129311 cgcccagctccccgtcctccgccgccgcgcccacgcgtacctccacgcgtaagcgcgccg 129252 Query: 149 cctccgcc 156 |||||||| Sbjct: 129251 cctccgcc 129244
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cgcccagctcgccgccctcg 108 |||||||||||||||||||| Sbjct: 1574816 cgcccagctcgccgccctcg 1574797
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 90 gcccagctcgccgccctcggccgccgcg 117 ||||||||||||||||||| ||||||| Sbjct: 2075355 gcccagctcgccgccctcgagcgccgcg 2075328
>gb|AC138792.2| Mus musculus BAC clone RP23-235I2 from chromosome 8, complete sequence Length = 181841 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 aagaagcagcagaaggccac 272 |||||||||||||||||||| Sbjct: 64151 aagaagcagcagaaggccac 64170
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 catggcgccgcccagctcgccgcc 104 |||||||||||||||| ||||||| Sbjct: 3238685 catggcgccgcccagcccgccgcc 3238708
>ref|XM_546281.2| PREDICTED: Canis familiaris similar to CG1998-PA (LOC489163), mRNA Length = 2092 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 cgccgtcgcggggctcctcg 135 |||||||||||||||||||| Sbjct: 319 cgccgtcgcggggctcctcg 300
>emb|AL139246.20| Human DNA sequence from clone RP3-395M20 on chromosome 1p36.11-36.33 Contains two genes for novel proteins (KIAA0450, FLJ00417, FLJ00414, FLJ00222, MGC26818, FLJ32465, DKFZp547M123, FLJ37582, ), five novel genes (FLJ11705, FLJ46690), the PANK4 gene for pantothenate kinase 4, the gene for a novel protein (ortholog of rodent hairy and enhancer of split 5 (Drosophila) (Hes5)), the TNFRSF14 gene for tumor necrosis factor receptor superfamily member 14 (herpesvirus entry mediator), the 3' end of the MMEL2 gene for membrane metallo-endopeptidase-like 2 and three CpG islands, complete sequence Length = 154736 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 ccaggaggcctcggtcacca 196 |||||||||||||||||||| Sbjct: 59884 ccaggaggcctcggtcacca 59865
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 3.8 Identities = 56/68 (82%) Strand = Plus / Minus Query: 89 cgcccagctcgccgccctcggccgccgcgccgtcgcggggctcctcgcgcaagcgcacgg 148 |||||||||| ||| |||| ||||||||||| |||| |||| |||| |||||| | | Sbjct: 364253 cgcccagctccccgtcctccgccgccgcgcccacgcgtacctccacgcgtaagcgcgccg 364194 Query: 149 cctccgcc 156 |||||||| Sbjct: 364193 cctccgcc 364186
>emb|X79242.5|PDSOX Paracoccus denitrificans ORF1, ORF2, and shxV, shxW, soxX, soxY, soxZ, soxA, soxB, soxC, soxD, soxE, soxF, soxG and soxH genes Length = 13155 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 ggcgccgcccagctcgccgccctc 107 |||||||||||| ||||||||||| Sbjct: 12929 ggcgccgcccagatcgccgccctc 12906
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tggcgccgcccagctcgccg 102 |||||||||||||||||||| Sbjct: 176512 tggcgccgcccagctcgccg 176493
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaggccgcgcccgaggccg 175 |||||||||||||||||||| Sbjct: 181332 caaggccgcgcccgaggccg 181351
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaggccgcgcccgaggccg 175 |||||||||||||||||||| Sbjct: 93331 caaggccgcgcccgaggccg 93350
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tggcgccgcccagctcgccg 102 |||||||||||||||||||| Sbjct: 323892 tggcgccgcccagctcgccg 323873
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaggccgcgcccgaggccg 175 |||||||||||||||||||| Sbjct: 14874 caaggccgcgcccgaggccg 14893
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tggcgccgcccagctcgccg 102 |||||||||||||||||||| Sbjct: 159000 tggcgccgcccagctcgccg 158981
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cgccaaggccgcgcccgagg 172 |||||||||||||||||||| Sbjct: 64118 cgccaaggccgcgcccgagg 64099
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tcgccgccctcggccgccgc 116 |||||||||||||||||||| Sbjct: 265778 tcgccgccctcggccgccgc 265797
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 84 ggcgccgcccagctcgccgccctcggcc 111 ||||||||||||| ||||||||||||| Sbjct: 84431 ggcgccgcccagcatgccgccctcggcc 84404
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cgccgcccagctcgccgccc 105 |||||||||||||||||||| Sbjct: 132648 cgccgcccagctcgccgccc 132667
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 86 cgccgcccagctcgccgccctcggccgc 113 ||||| ||||||| |||||||||||||| Sbjct: 254641 cgccgtccagctcaccgccctcggccgc 254668
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ctcgccgccctcggccgccgcgcc 119 ||||| |||||||||||||||||| Sbjct: 249659 ctcgcagccctcggccgccgcgcc 249682
>emb|AL645771.1|SCSCP2 Streptomyces coelicolor A3(2) plasmid SCP2 Length = 31317 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cgccgcccagctcgccgccc 105 |||||||||||||||||||| Sbjct: 13789 cgccgcccagctcgccgccc 13770
>emb|AJ639924.1| Plasmid pB3 complete genome Length = 56167 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctcggccgccgcgccgtcgc 124 |||||||||||||||||||| Sbjct: 55517 ctcggccgccgcgccgtcgc 55536
>emb|BX927313.11| Zebrafish DNA sequence from clone CH211-12A1 in linkage group 18, complete sequence Length = 189797 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 aagaggaaaccggcgcccaa 245 |||||||||||||||||||| Sbjct: 77751 aagaggaaaccggcgcccaa 77732
>gb|DQ397585.1| Cenarchaeum symbiosum clone C20G08, complete sequence Length = 40803 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ccgcgccgtcgcggggctcc 132 |||||||||||||||||||| Sbjct: 30768 ccgcgccgtcgcggggctcc 30787
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 gcccatggcgccgcccagctcgcc 101 ||||||||||||||||| |||||| Sbjct: 1506284 gcccatggcgccgcccaactcgcc 1506307
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 84 ggcgccgcccagctcgccgccctcggcc 111 |||||||||| ||| ||||||||||||| Sbjct: 45056 ggcgccgccctgctggccgccctcggcc 45029
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 cgcgcccgaggccgaccagg 181 |||||||||||||||||||| Sbjct: 2120230 cgcgcccgaggccgaccagg 2120211
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.8 Identities = 56/68 (82%) Strand = Plus / Minus Query: 89 cgcccagctcgccgccctcggccgccgcgccgtcgcggggctcctcgcgcaagcgcacgg 148 |||||||||| ||| |||| ||||||||||| |||| |||| |||| |||||| | | Sbjct: 364253 cgcccagctccccgtcctccgccgccgcgcccacgcgtacctccacgcgtaagcgcgccg 364194 Query: 149 cctccgcc 156 |||||||| Sbjct: 364193 cctccgcc 364186
>gb|DQ005575.1| Streptomyces cinnamonensis methylmalonic semialdehyde dehydrogenase (msdA) gene, complete cds Length = 2328 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 ctcgccgccctcggccgccgcgcc 119 ||||| |||||||||||||||||| Sbjct: 1443 ctcgcagccctcggccgccgcgcc 1420
>dbj|AK109265.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-185-B06, full insert sequence Length = 1231 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ccaagaagcagcagaaggcc 270 |||||||||||||||||||| Sbjct: 62 ccaagaagcagcagaaggcc 81
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gccgccctcggccgccgcgc 118 |||||||||||||||||||| Sbjct: 1576215 gccgccctcggccgccgcgc 1576196
>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol precursor -orf2, putative Fourf gag/pol protein, putative NADP-dependent malic enzyme, putative argonaute protein, putative pinhead protein, putative pol protein, putative gag protein, putative TNP2, r1-B73 proteins, putative genetic modifier, putative S-receptor kinase, putative aldose reductase-related protein, putative glutathione peroxidase, putative glycerol 3-phosphate permease, putative response regulator, and putative 4-coumarate-CoA ligase-like protein genes, complete cds Length = 290350 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cgccgcccagctcgccgccc 105 |||||||||||||||||||| Sbjct: 263348 cgccgcccagctcgccgccc 263329 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cgccgcccagctcgccgccc 105 |||||||||||||||||||| Sbjct: 254296 cgccgcccagctcgccgccc 254277
>gb|AY110926.1| Zea mays CL2322_1 mRNA sequence Length = 1495 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 ccaaggccgccaagaagcagcaga 265 ||||||||| |||||||||||||| Sbjct: 1124 ccaaggccgacaagaagcagcaga 1147
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tcggccgccgcgccgtcgcg 125 |||||||||||||||||||| Sbjct: 3294002 tcggccgccgcgccgtcgcg 3294021
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.8 Identities = 56/68 (82%) Strand = Plus / Minus Query: 89 cgcccagctcgccgccctcggccgccgcgccgtcgcggggctcctcgcgcaagcgcacgg 148 |||||||||| ||| |||| ||||||||||| |||| |||| |||| |||||| | | Sbjct: 364250 cgcccagctccccgtcctccgccgccgcgcccacgcgtacctccacgcgtaagcgcgccg 364191 Query: 149 cctccgcc 156 |||||||| Sbjct: 364190 cctccgcc 364183
>gb|U78289.1|SFU78289 Streptomyces fradiae tylactone synthase, starter module and modules 1-7, (tylG) gene, complete cds Length = 43280 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cgccctcggccgccgcgccg 120 |||||||||||||||||||| Sbjct: 29955 cgccctcggccgccgcgccg 29936
>gb|L48550.1|STMMSDA Streptomyces coelicolor methylmalonic acid semialdehyde dehydrogenase (msdA) gene, complete cds Length = 3986 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 ctcgccgccctcggccgccgcgcc 119 ||||| |||||||||||||||||| Sbjct: 2379 ctcgcagccctcggccgccgcgcc 2356 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,686,520 Number of Sequences: 3902068 Number of extensions: 1686520 Number of successful extensions: 47805 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 44989 Number of HSP's gapped (non-prelim): 2820 length of query: 292 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 270 effective length of database: 17,147,199,772 effective search space: 4629743938440 effective search space used: 4629743938440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
