Clone Name | bastl56f11 |
---|---|
Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 155 bits (391), Expect = 5e-38 Identities = 78/101 (77%), Positives = 78/101 (77%) Frame = +3 Query: 141 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPGNGRRTSVSKVGXXXXXXXXXXXXXL 320 MLTATKPLVGGAC TFVVPEARRKPGNGRRTSVSKVG L Sbjct: 1 MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTL 60 Query: 321 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAG 443 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAG Sbjct: 61 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAG 101
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 57.0 bits (136), Expect = 2e-08 Identities = 40/97 (41%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = +3 Query: 141 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPG-NGRRTSVSKVGXXXXXXXXXXXXX 317 M TATKPLVG +F+V EARRKP N RRT V Sbjct: 1 MQTATKPLVGARAVPLSRRA---SFLVAEARRKPSTNARRTRVGSTSTTTTTTT------ 51 Query: 318 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHM 428 + D NG A+ TV +P H D EMKATV+VHM Sbjct: 52 ILTDVNGPALTTVAKPG-HQYDLKQTVEMKATVSVHM 87
>SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 436 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 318 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAG 443 ++ + A + TRPD++V +R E A V H +AAG Sbjct: 320 INPSGSAARLRASTRPDLYVVNRGEQAERVALVIAHQLRAAG 361
>SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit (Sodium| channel protein type X alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.8) (Peripheral nerve sodium channel 3) (Sensory neuron sodium channel) Length = 1956 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/55 (30%), Positives = 22/55 (40%) Frame = +2 Query: 62 LGRNQPRRCNLPPHRVAQ*PTP*RTHDADGDQTASRGRVCRAVVVGPAEDVRGAR 226 LGR + LP + Q P P R H +G G + GPA D G + Sbjct: 538 LGRGAGQTGPLPRSPLPQSPNPGRRHGEEGQLGVPTGELTAGAPEGPALDTTGQK 592
>GLGB1_STRCO (Q59833) 1,4-alpha-glucan branching enzyme 1 (EC 2.4.1.18)| (Glycogen branching enzyme 1) (BE 1) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1) Length = 774 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/44 (38%), Positives = 20/44 (45%) Frame = -3 Query: 216 RTSSAGPTTTARHTRPRLAVWSPSASWVRYGVGYCATRWGGRLH 85 R A PTT R AVW+P+A VR G+ W G H Sbjct: 178 RALGAHPTTHEGVAGTRFAVWAPNARGVRVAGGF--NFWDGTGH 219 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,767,087 Number of Sequences: 219361 Number of extensions: 953238 Number of successful extensions: 2654 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2607 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2652 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)