ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 155 5e-38
2LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC... 57 2e-08
3SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 29 4.5
4SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit ... 29 5.9
5GLGB1_STRCO (Q59833) 1,4-alpha-glucan branching enzyme 1 (EC 2.4... 28 7.7

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score =  155 bits (391), Expect = 5e-38
 Identities = 78/101 (77%), Positives = 78/101 (77%)
 Frame = +3

Query: 141 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPGNGRRTSVSKVGXXXXXXXXXXXXXL 320
           MLTATKPLVGGAC          TFVVPEARRKPGNGRRTSVSKVG             L
Sbjct: 1   MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTL 60

Query: 321 SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAG 443
           SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAG
Sbjct: 61  SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAG 101



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>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:2)
          Length = 932

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 40/97 (41%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
 Frame = +3

Query: 141 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPG-NGRRTSVSKVGXXXXXXXXXXXXX 317
           M TATKPLVG             +F+V EARRKP  N RRT V                 
Sbjct: 1   MQTATKPLVGARAVPLSRRA---SFLVAEARRKPSTNARRTRVGSTSTTTTTTT------ 51

Query: 318 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHM 428
           +  D NG A+ TV +P  H  D     EMKATV+VHM
Sbjct: 52  ILTDVNGPALTTVAKPG-HQYDLKQTVEMKATVSVHM 87



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>SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 436

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 318 LSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAG 443
           ++   + A +   TRPD++V +R    E  A V  H  +AAG
Sbjct: 320 INPSGSAARLRASTRPDLYVVNRGEQAERVALVIAHQLRAAG 361



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>SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit (Sodium|
           channel protein type X alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.8) (Peripheral nerve
           sodium channel 3) (Sensory neuron sodium channel)
          Length = 1956

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +2

Query: 62  LGRNQPRRCNLPPHRVAQ*PTP*RTHDADGDQTASRGRVCRAVVVGPAEDVRGAR 226
           LGR   +   LP   + Q P P R H  +G      G +      GPA D  G +
Sbjct: 538 LGRGAGQTGPLPRSPLPQSPNPGRRHGEEGQLGVPTGELTAGAPEGPALDTTGQK 592



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>GLGB1_STRCO (Q59833) 1,4-alpha-glucan branching enzyme 1 (EC 2.4.1.18)|
           (Glycogen branching enzyme 1) (BE 1)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 1)
          Length = 774

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -3

Query: 216 RTSSAGPTTTARHTRPRLAVWSPSASWVRYGVGYCATRWGGRLH 85
           R   A PTT       R AVW+P+A  VR   G+    W G  H
Sbjct: 178 RALGAHPTTHEGVAGTRFAVWAPNARGVRVAGGF--NFWDGTGH 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,767,087
Number of Sequences: 219361
Number of extensions: 953238
Number of successful extensions: 2654
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2652
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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