ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56f09 |
|---|---|
| Clone Library Name | barley_pub |
>YNR7_SCHPO (Q9USZ2) Hypothetical protein C11G11.07 in chromosome II| Length = 955 Score = 62.4 bits (150), Expect = 5e-10 Identities = 29/73 (39%), Positives = 47/73 (64%) Frame = +3 Query: 210 TVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLR 389 T+ ALA LY + D + A+ +L++FQ + AWQ+ S+L+ + S++E +F +QTLR Sbjct: 3 TLLSALATLYANTDREQKLQANNYLEEFQKSPAAWQICFSILNQDDSSIEAKLFAAQTLR 62 Query: 390 SKVQRDFEELPSE 428 K+ DF +LP E Sbjct: 63 QKIVYDFHQLPKE 75
>TNPO3_MOUSE (Q6P2B1) Transportin 3| Length = 923 Score = 59.3 bits (142), Expect = 4e-09 Identities = 27/73 (36%), Positives = 47/73 (64%) Frame = +3 Query: 213 VKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRS 392 V +A+ ALYH PD + + A WL + Q ++ AW+++D LL ++E+ F +QT++ Sbjct: 11 VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIR-QDVESCYFAAQTMKM 69 Query: 393 KVQRDFEELPSEA 431 K+Q F ELP+++ Sbjct: 70 KIQTSFYELPTDS 82
>TNPO3_HUMAN (Q9Y5L0) Transportin 3 (Transportin-SR) (TRN-SR) (Importin 12)| Length = 975 Score = 59.3 bits (142), Expect = 4e-09 Identities = 27/73 (36%), Positives = 47/73 (64%) Frame = +3 Query: 213 VKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRS 392 V +A+ ALYH PD + + A WL + Q ++ AW+++D LL ++E+ F +QT++ Sbjct: 11 VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIR-QDVESCYFAAQTMKM 69 Query: 393 KVQRDFEELPSEA 431 K+Q F ELP+++ Sbjct: 70 KIQTSFYELPTDS 82
>MTR10_YEAST (Q99189) mRNA transport regulator MTR10| Length = 972 Score = 37.7 bits (86), Expect = 0.012 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Frame = +3 Query: 189 MEAQATATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDE---SSNLE 359 M+ + ++ AL + + A ++L++FQ + AW + + +L E ++ LE Sbjct: 1 MDNLQVSDIETALQCISSTASQDDKNKALQFLEQFQRSTVAWSICNEILSKEDPTNALLE 60 Query: 360 TLMFCSQTLRSKVQRDFEEL 419 +F +QTLR+KV D +L Sbjct: 61 LNIFAAQTLRNKVTYDLSQL 80
>IPO13_RAT (Q9JM04) Importin-13 (Imp13) (Late gestation lung 2 protein)| Length = 963 Score = 37.4 bits (85), Expect = 0.016 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Frame = +3 Query: 162 EEEVGFGADMEAQA----TATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADS 329 EE++G A A V++AL LY+ P+ + A +WL + Q + AW + Sbjct: 5 EEQLGAAGAGAAPALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQ 64 Query: 330 LLHDESSNLETLMFCSQTLRSKVQRDFEELPSEAF 434 LL + E F + L K+ R + ++P++ + Sbjct: 65 LLQPDKVP-EIQYFGASALHIKISRYWSDIPTDQY 98
>IPO13_MOUSE (Q8K0C1) Importin-13 (Imp13)| Length = 963 Score = 37.4 bits (85), Expect = 0.016 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Frame = +3 Query: 162 EEEVGFGADMEAQA----TATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADS 329 EE++G A A V++AL LY+ P+ + A +WL + Q + AW + Sbjct: 5 EEQLGAAGAGAAPALDFTVENVEKALHQLYYDPNIDNKNLAQKWLMQAQVSPQAWHFSWQ 64 Query: 330 LLHDESSNLETLMFCSQTLRSKVQRDFEELPSEAF 434 LL + E F + L K+ R + ++P++ + Sbjct: 65 LLQPDKVP-EIQYFGASALHIKISRYWSDIPTDQY 98
>IPO13_HUMAN (O94829) Importin-13 (Imp13) (Ran-binding protein 13) (RanBP13)| (Karyopherin 13) (Kap13) Length = 963 Score = 36.6 bits (83), Expect = 0.027 Identities = 20/74 (27%), Positives = 38/74 (51%) Frame = +3 Query: 213 VKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRS 392 V++AL LY+ P+ + A +WL + Q + AW + LL + E F + L Sbjct: 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVP-EIQYFGASALHI 84 Query: 393 KVQRDFEELPSEAF 434 K+ R + ++P++ + Sbjct: 85 KISRYWSDIPTDQY 98
>HPPD_TETTH (Q27203) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) (F-antigen homolog) (TF-AG) Length = 404 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +3 Query: 240 HHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRSKV 398 + PD+ + +AAD W +K W V DS++H E S+L +++ + K+ Sbjct: 201 NQPDNMMTSAAD-WYEKTLDFHRFWSVDDSMIHTEFSSLRSIVMTDYDQKIKM 252
>DYHC_FUSSO (P78716) Dynein heavy chain, cytosolic (DYHC)| Length = 4349 Score = 31.2 bits (69), Expect = 1.1 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 18/137 (13%) Frame = +3 Query: 78 IAGHRSSTPRKSSTVEGCSRKRAAGGSVEEEVGFGADMEAQATATVKEALAALYH----- 242 +A R + RK++++E + V + A+A V+EA A++ + Sbjct: 3253 VADQREAEQRKNTSLEIQANLEKQEAEVASRKKVVLEDLAKAEPAVEEAKASVSNIKRQH 3312 Query: 243 --------HPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMF-----CSQT 383 +P +R A D H ++ W+ +L + LMF ++ Sbjct: 3313 LTEVRSMGNPPQGVRLAMDAVCTLLGHRINDWKAVQGILRKDDFIASILMFDNAKQMTKG 3372 Query: 384 LRSKVQRDFEELPSEAF 434 LR+K++ DF P F Sbjct: 3373 LRNKMRNDFLSNPEFTF 3389
>SORL_RABIT (Q95209) Sortilin-related receptor precursor (Sorting| protein-related receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2213 Score = 30.4 bits (67), Expect = 1.9 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 11/77 (14%) Frame = +3 Query: 159 VEEEVGFGADMEAQATATVKEALAALYHHPDDTIRTA-ADRWLQKFQHTLD--------- 308 + E++ FGA +A +A YH P D R AD + Q T D Sbjct: 148 ISEKLNFGAGNNTEAV------VAQFYHSPADNKRYIFADAYAQYLWITFDFCNTIHGFS 201 Query: 309 -AWQVADSLLHDESSNL 356 ++ AD LLH ++SNL Sbjct: 202 IPFRAADLLLHSKASNL 218
>XPO1_YEAST (P30822) Exportin-1 (Chromosome region maintenance protein 1)| Length = 1084 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = +3 Query: 270 ADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQTLRSKVQRDFEELPSE 428 A L KFQ DAWQ AD +L S+N ++ L + R ++ LP++ Sbjct: 34 AQEILTKFQDNPDAWQKADQIL-QFSTNPQSKFIALSILDKLITRKWKLLPND 85
>DNMBP_MOUSE (Q6TXD4) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1580 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Frame = +3 Query: 39 FFFSSSIKPYPPR-------IAGHRSSTPRKSSTVEGCSRKRA 146 F +SS +KPY PR +A H S+ S + GC R+ + Sbjct: 1340 FVYSSFLKPYNPRCSHSDASVASHSSTESEHSGSSPGCHRQNS 1382
>IKBL_MOUSE (O88995) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 29.3 bits (64), Expect = 4.3 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Frame = +3 Query: 63 PYPPRIAGHRSSTPRKSSTVEGCSRKRAAGGSVEEEVGFGADMEAQATATV------KEA 224 P PPR AG R+ PR + E S R G V G D EA A A V +E Sbjct: 274 PEPPR-AGPRAEHPRGA---ERGSLWRF--GDVPWPCPGGGDPEAMAAALVARGPPLEEQ 327 Query: 225 LAALYHHPDDTIRTAADRWLQKFQHTLDAWQV 320 A + +R DR+LQ+F+ ++ W++ Sbjct: 328 GALKRYLRVQQVRWHPDRFLQRFRSQIETWEL 359
>MURA_BORPE (Q7VSZ3) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 422 Score = 28.9 bits (63), Expect = 5.7 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 10/57 (17%) Frame = +3 Query: 135 RKRAAGGSVEEEVGFGADMEAQATA--TVKEALAAL--------YHHPDDTIRTAAD 275 R RA G E GF DM+AQ A TV + A + Y H + R AD Sbjct: 288 RPRAVGARTHEYPGFATDMQAQLMALDTVADGTAVIVENIFENRYMHVQELCRLGAD 344
>MURA_BORBR (Q7WDY6) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 422 Score = 28.9 bits (63), Expect = 5.7 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 10/57 (17%) Frame = +3 Query: 135 RKRAAGGSVEEEVGFGADMEAQATA--TVKEALAAL--------YHHPDDTIRTAAD 275 R RA G E GF DM+AQ A TV + A + Y H + R AD Sbjct: 288 RPRAVGARTHEYPGFATDMQAQLMALDTVADGTAVIVENIFENRYMHVQELCRLGAD 344
>PHYB_SORBI (P93527) Phytochrome B| Length = 1178 Score = 28.5 bits (62), Expect = 7.4 Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = +3 Query: 51 SSIKPYPPRIAGHRSSTPRKSSTVEGCSRKRAAGGSVEEEVGFGADMEAQATAT--VKEA 224 SS +P PR A H +SS G S RA GG G G A ATAT V +A Sbjct: 14 SSARPEAPRHAHHHHHHHSQSS---GGSTSRAGGGGGGGGGGGGTAATATATATESVSKA 70 Query: 225 LA 230 +A Sbjct: 71 VA 72
>CHSC_ASPFU (Q92197) Chitin synthase C (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase C) (Class-III chitin synthase C) Length = 893 Score = 28.5 bits (62), Expect = 7.4 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = +3 Query: 108 KSSTVEGCSRKRAAGGS---VEEEVGFGADMEAQATATVKEALAALYHHPDDTIRTAADR 278 K+ + K+A G +EE AD+++Q ATVK ALA Y P + + D Sbjct: 755 KADALPSAQTKKADGSKSNFIEEIDKPQADIDSQFEATVKRALAP-YQEPKEDSTISLDD 813 Query: 279 WLQKFQHTLDAWQVADSLL 335 + F+ +L + +LL Sbjct: 814 SYRNFRTSLVLLWILSNLL 832
>ESYN_GIBPU (Q00868) Enniatin synthetase [Includes: N-methylcyclopeptide| synthetase (EC 6.3.2.-); S-adenosyl-L-methionine-dependent N-methyltransferase (EC 2.1.1.-)] (Fragment) Length = 983 Score = 28.5 bits (62), Expect = 7.4 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 17/75 (22%) Frame = +3 Query: 159 VEEEVGFGADMEAQATATVKEALAALYHH--------------PDDTIR---TAADRWLQ 287 + E GF ++ A + AL A++HH D+ +R T A+R LQ Sbjct: 756 IANEAGFRVEVSAARQWSQNGALDAVFHHFPSSNTDRTLIQFPTDNQLRSSLTLANRPLQ 815 Query: 288 KFQHTLDAWQVADSL 332 K Q A QV +SL Sbjct: 816 KLQRRRAALQVRESL 830
>Y4633_RHILO (Q98DM8) UPF0102 protein mlr4633| Length = 125 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +3 Query: 189 MEAQATATVKEALAALYHHPDDTIRTAADRWLQK 290 +E +A ++ EA+ A+ H + I AAD WL + Sbjct: 59 VEVKARRSLMEAMEAIGHESERRIEAAADIWLSR 92
>ESYN_FUSEQ (Q00869) Enniatin synthetase [Includes: N-methylcyclopeptide| synthetase (EC 6.3.2.-); S-adenosyl-L-methionine-dependent N-methyltransferase (EC 2.1.1.-)] Length = 3131 Score = 28.1 bits (61), Expect = 9.7 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 17/75 (22%) Frame = +3 Query: 159 VEEEVGFGADMEAQATATVKEALAALYHH--PDDTIR---------------TAADRWLQ 287 + +E GF ++ A + AL A++HH P T R T A+R LQ Sbjct: 2379 IAKEAGFRVEVSAARQWSQSGALDAVFHHFPPSSTDRTLIQFPTDNELRSSLTLANRPLQ 2438 Query: 288 KFQHTLDAWQVADSL 332 K Q A QV + L Sbjct: 2439 KLQRRRAALQVREKL 2453
>GLND_XANOR (Q5H1D3) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 869 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +3 Query: 156 SVEEEVGFGADMEAQATATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSL 332 ++ E +GF D+E+ E + ++ IR +DR LQ+F+ D +SL Sbjct: 279 TLAERLGFADDLESLGV----EKMMQRFYRSAALIRRISDRLLQRFEEQFDGEATPESL 333
>GLND_XANOM (Q2P497) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 869 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +3 Query: 156 SVEEEVGFGADMEAQATATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSL 332 ++ E +GF D+E+ E + ++ IR +DR LQ+F+ D +SL Sbjct: 279 TLAERLGFADDLESLGV----EKMMQRFYRSAALIRRISDRLLQRFEEQFDGEATPESL 333
>SORL_HUMAN (Q92673) Sortilin-related receptor precursor (Sorting| protein-related receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2214 Score = 28.1 bits (61), Expect = 9.7 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 11/77 (14%) Frame = +3 Query: 159 VEEEVGFGADMEAQATATVKEALAALYHHPDDTIRTA-ADRWLQKFQHTLD--------- 308 + +++ FG ++A +A YH P D R AD + Q T D Sbjct: 148 ISDKLNFGLGNRSEAV------IAQFYHSPADNKRYIFADAYAQYLWITFDFCNTLQGFS 201 Query: 309 -AWQVADSLLHDESSNL 356 ++ AD LLH ++SNL Sbjct: 202 IPFRAADLLLHSKASNL 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,817,778 Number of Sequences: 219361 Number of extensions: 583863 Number of successful extensions: 2583 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2482 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2579 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
