ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
2dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
3ref|NM_178711.3| Mus musculus phospholipid scramblase 4 (Plscr4)... 42 1.2
4gb|BC052067.1| Mus musculus phospholipid scramblase 4, mRNA (cDN... 42 1.2
5emb|AL606488.15| Mouse DNA sequence from clone RP23-90E8 on chro... 42 1.2
6gb|AC101973.7| Mus musculus chromosome 3, clone RP24-280A2, comp... 42 1.2
7dbj|AK141580.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 42 1.2
8emb|CR523088.1| Gallus gallus finished cDNA, clone ChEST568a8 42 1.2
9dbj|AK166080.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 42 1.2
10dbj|AK165919.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 42 1.2
11dbj|AK035919.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 42 1.2
12dbj|AK035878.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 42 1.2
13dbj|AK045372.1| Mus musculus adult male corpora quadrigemina cDN... 42 1.2
14dbj|AK054258.1| Mus musculus 2 days pregnant adult female ovary ... 42 1.2
15dbj|AK082330.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 42 1.2
16ref|XM_231010.3| PREDICTED: Rattus norvegicus similar to C20orf8... 42 1.2
17gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 42 1.2
18emb|AL844516.17| Mouse DNA sequence from clone RP23-367O15 on ch... 42 1.2
19emb|AL928831.11| Mouse DNA sequence from clone RP23-296P2 on chr... 42 1.2
20emb|AL590442.1|CNS07EG9 chromosome II of strain GB-M1 of Encepha... 42 1.2
21gb|AC102656.28| Mus musculus chromosome 5, clone RP23-15G1, comp... 40 4.8
22gb|AC102259.7| Mus musculus chromosome 3, clone RP24-199C12, com... 40 4.8
23gb|AC182666.2| Populus trichocarpa clone Pop1-18F23, complete se... 40 4.8
24gb|CP000114.1| Streptococcus agalactiae A909, complete genome 40 4.8
25gb|AC161536.7| Mus musculus chromosome 5, clone RP23-340A18, com... 40 4.8
26gb|AC118009.7| Mus musculus chromosome 8, clone RP23-442H2, comp... 40 4.8
27emb|CR478208.13| Zebrafish DNA sequence from clone CH211-149M3 i... 40 4.8
28gb|AC113275.8| Mus musculus chromosome 8, clone RP23-383K23, com... 40 4.8
29gb|AC159094.4| Mus musculus chromosome 3, clone RP23-277N17, com... 40 4.8
30emb|AL139123.15| Human DNA sequence from clone RP11-500G10 on ch... 40 4.8
31gb|AE014246.1| Streptococcus agalactiae 2603V/R section 56 of 10... 40 4.8
32emb|AL766849.1|SAG766849 Streptococcus agalactiae NEM316 complet... 40 4.8
33emb|AJ010592.2|GTAJ10592 Guillardia theta DNA for complete seque... 40 4.8
34emb|CR394547.7| Zebrafish DNA sequence from clone CH211-127P22 i... 40 4.8
35gb|AC153590.7| Mus musculus 6 BAC RP23-480O11 (Roswell Park Canc... 40 4.8
36gb|AC145068.8| Mus musculus chromosome 8, clone RP23-197G5, comp... 40 4.8
37gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 4.8
38gb|AC159636.3| Mus musculus BAC clone RP24-93H15 from chromosome... 40 4.8
39emb|AL929405.8| Mouse DNA sequence from clone RP24-323B22 on chr... 40 4.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                  
Query: 312     atagagttgaaagtgagttggacaatggttgccatcatacatcagacgaag 362
               |||||||||||||||| ||||| |||||||| ||  |||||||||| ||||
Sbjct: 8334121 atagagttgaaagtgacttggataatggttggcaaaatacatcagatgaag 8334071
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>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0603C10
          Length = 187620

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                 
Query: 312    atagagttgaaagtgagttggacaatggttgccatcatacatcagacgaag 362
              |||||||||||||||| ||||| |||||||| ||  |||||||||| ||||
Sbjct: 127626 atagagttgaaagtgacttggataatggttggcaaaatacatcagatgaag 127576
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>ref|NM_178711.3| Mus musculus phospholipid scramblase 4 (Plscr4), mRNA
          Length = 3259

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 ctggaactgatgacacgtttt 191
           |||||||||||||||||||||
Sbjct: 948 ctggaactgatgacacgtttt 968
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>gb|BC052067.1| Mus musculus phospholipid scramblase 4, mRNA (cDNA clone MGC:62466
           IMAGE:5708712), complete cds
          Length = 2771

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 ctggaactgatgacacgtttt 191
           |||||||||||||||||||||
Sbjct: 502 ctggaactgatgacacgtttt 522
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>emb|AL606488.15| Mouse DNA sequence from clone RP23-90E8 on chromosome 13 Contains part of
              a novel gene, complete sequence
          Length = 188423

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 103    ttcttctaaagtgttaactat 123
              |||||||||||||||||||||
Sbjct: 109938 ttcttctaaagtgttaactat 109918
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>gb|AC101973.7| Mus musculus chromosome 3, clone RP24-280A2, complete sequence
          Length = 175396

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    agaatttgaatgattttcaaa 44
             |||||||||||||||||||||
Sbjct: 50767 agaatttgaatgattttcaaa 50747
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>dbj|AK141580.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:C630033J05 product:phospholipid
           scramblase 4, full insert sequence
          Length = 3778

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 ctggaactgatgacacgtttt 191
           |||||||||||||||||||||
Sbjct: 474 ctggaactgatgacacgtttt 494
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>emb|CR523088.1| Gallus gallus finished cDNA, clone ChEST568a8
          Length = 963

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 307 gatttatagagttgaaagtga 327
           |||||||||||||||||||||
Sbjct: 738 gatttatagagttgaaagtga 718
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>dbj|AK166080.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
           library, clone:G730037A01 product:phospholipid
           scramblase 4, full insert sequence
          Length = 2688

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 ctggaactgatgacacgtttt 191
           |||||||||||||||||||||
Sbjct: 440 ctggaactgatgacacgtttt 460
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>dbj|AK165919.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
           library, clone:G730019M05 product:phospholipid
           scramblase 4, full insert sequence
          Length = 3198

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 ctggaactgatgacacgtttt 191
           |||||||||||||||||||||
Sbjct: 949 ctggaactgatgacacgtttt 969
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>dbj|AK035919.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:9630018D19 product:phospholipid
           scramblase 4, full insert sequence
          Length = 1569

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 ctggaactgatgacacgtttt 191
           |||||||||||||||||||||
Sbjct: 949 ctggaactgatgacacgtttt 969
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>dbj|AK035878.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:9630013D22 product:similar to
           PHOSPHOLIPID SCRAMBLASE 4 (PL SCRAMBLASE 4) (CA2+
           DEPENDENT PHOSPHOLIPID SCRAMBLASE 4) [Homo sapiens],
           full insert sequence
          Length = 1552

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 ctggaactgatgacacgtttt 191
           |||||||||||||||||||||
Sbjct: 933 ctggaactgatgacacgtttt 953
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>dbj|AK045372.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230107L11
           product:PHOSPHOLIPID SCRAMBLASE 4 (PL SCRAMBLASE 4)
           (CA2+ DEPENDENT PHOSPHOLIPID SCRAMBLASE 4) (FRAGMENT)
           homolog [Mus musculus], full insert sequence
          Length = 2398

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 ctggaactgatgacacgtttt 191
           |||||||||||||||||||||
Sbjct: 949 ctggaactgatgacacgtttt 969
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>dbj|AK054258.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330004N10
           product:PHOSPHOLIPID SCRAMBLASE 4 (PL SCRAMBLASE 4)
           (CA2+ DEPENDENT PHOSPHOLIPID SCRAMBLASE 4) (FRAGMENT)
           homolog [Mus musculus], full insert sequence
          Length = 2378

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 ctggaactgatgacacgtttt 191
           |||||||||||||||||||||
Sbjct: 506 ctggaactgatgacacgtttt 526
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>dbj|AK082330.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230038H01 product:similar to
           PHOSPHOLIPID SCRAMBLASE 4 (PL SCRAMBLASE 4) (CA2+
           DEPENDENT PHOSPHOLIPID SCRAMBLASE 4) [Homo sapiens],
           full insert sequence
          Length = 2706

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 ctggaactgatgacacgtttt 191
           |||||||||||||||||||||
Sbjct: 391 ctggaactgatgacacgtttt 411
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>ref|XM_231010.3| PREDICTED: Rattus norvegicus similar to C20orf82 (LOC311760), mRNA
          Length = 1770

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 taactttggtcaggaagaata 165
           |||||||||||||||||||||
Sbjct: 164 taactttggtcaggaagaata 144
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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 28      tttgaatgattttcaaatcat 48
               |||||||||||||||||||||
Sbjct: 1582554 tttgaatgattttcaaatcat 1582534
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>emb|AL844516.17| Mouse DNA sequence from clone RP23-367O15 on chromosome 2, complete
              sequence
          Length = 142037

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 56     agaacttcagaaaagggctgc 76
              |||||||||||||||||||||
Sbjct: 121527 agaacttcagaaaagggctgc 121547
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>emb|AL928831.11| Mouse DNA sequence from clone RP23-296P2 on chromosome 2, complete
             sequence
          Length = 123116

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 145   taactttggtcaggaagaata 165
             |||||||||||||||||||||
Sbjct: 38494 taactttggtcaggaagaata 38474
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>emb|AL590442.1|CNS07EG9 chromosome II of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 197426

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      tatttcctcaagtacttctcg 21
              |||||||||||||||||||||
Sbjct: 172998 tatttcctcaagtacttctcg 172978
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>gb|AC102656.28| Mus musculus chromosome 5, clone RP23-15G1, complete sequence
          Length = 227533

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    aaaagggacaccaacagatt 263
              ||||||||||||||||||||
Sbjct: 130320 aaaagggacaccaacagatt 130339
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>gb|AC102259.7| Mus musculus chromosome 3, clone RP24-199C12, complete sequence
          Length = 182793

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   aaaagggacaccaacagatt 263
             ||||||||||||||||||||
Sbjct: 68474 aaaagggacaccaacagatt 68493
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>gb|AC182666.2| Populus trichocarpa clone Pop1-18F23, complete sequence
          Length = 105222

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    aatttgaatgattttcaaat 45
             ||||||||||||||||||||
Sbjct: 72179 aatttgaatgattttcaaat 72198
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 1       tatttcctcaagtacttctc 20
               ||||||||||||||||||||
Sbjct: 1254863 tatttcctcaagtacttctc 1254882
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>gb|AC161536.7| Mus musculus chromosome 5, clone RP23-340A18, complete sequence
          Length = 218835

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    aaaagggacaccaacagatt 263
              ||||||||||||||||||||
Sbjct: 186367 aaaagggacaccaacagatt 186348
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>gb|AC118009.7| Mus musculus chromosome 8, clone RP23-442H2, complete sequence
          Length = 208458

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    aaaagggacaccaacagatt 263
              ||||||||||||||||||||
Sbjct: 108788 aaaagggacaccaacagatt 108769
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>emb|CR478208.13| Zebrafish DNA sequence from clone CH211-149M3 in linkage group 16,
              complete sequence
          Length = 195111

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     aatttgaatgattttcaaat 45
              ||||||||||||||||||||
Sbjct: 144637 aatttgaatgattttcaaat 144656
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>gb|AC113275.8| Mus musculus chromosome 8, clone RP23-383K23, complete sequence
          Length = 253984

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   gatttgcaatgccctgatga 279
             ||||||||||||||||||||
Sbjct: 46162 gatttgcaatgccctgatga 46143
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>gb|AC159094.4| Mus musculus chromosome 3, clone RP23-277N17, complete sequence
          Length = 192453

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   aaaagggacaccaacagatt 263
             ||||||||||||||||||||
Sbjct: 77452 aaaagggacaccaacagatt 77433
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>emb|AL139123.15| Human DNA sequence from clone RP11-500G10 on chromosome 10 Contains
             three novel genes, a peptidylprolyl isomerase A
             (cyclophilin A) (PPIA) pseudogene, a meningioma expressed
             antigen 6 (MGEA6) pseudogene, a novel protein similar
             thioredoxin-like 2 (TXNL2) and four CpG islands, complete
             sequence
          Length = 209527

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   gatttgcaatgccctgatga 279
             ||||||||||||||||||||
Sbjct: 28972 gatttgcaatgccctgatga 28991
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>gb|AE014246.1| Streptococcus agalactiae 2603V/R section 56 of 100 of the complete
             genome
          Length = 23333

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     tatttcctcaagtacttctc 20
             ||||||||||||||||||||
Sbjct: 13751 tatttcctcaagtacttctc 13770
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>emb|AL766849.1|SAG766849 Streptococcus agalactiae NEM316 complete genome, segment 7
          Length = 128050

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      tatttcctcaagtacttctc 20
              ||||||||||||||||||||
Sbjct: 122674 tatttcctcaagtacttctc 122693
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>emb|AJ010592.2|GTAJ10592 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2
          Length = 180915

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    aatttgaatgattttcaaat 45
             ||||||||||||||||||||
Sbjct: 70242 aatttgaatgattttcaaat 70223
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>emb|CR394547.7| Zebrafish DNA sequence from clone CH211-127P22 in linkage group 16,
              complete sequence
          Length = 151129

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     aatttgaatgattttcaaat 45
              ||||||||||||||||||||
Sbjct: 104829 aatttgaatgattttcaaat 104848
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>gb|AC153590.7| Mus musculus 6 BAC RP23-480O11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 181877

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    gaatgattttcaaatcattg 50
             ||||||||||||||||||||
Sbjct: 91240 gaatgattttcaaatcattg 91221
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>gb|AC145068.8| Mus musculus chromosome 8, clone RP23-197G5, complete sequence
          Length = 195178

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   gatttgcaatgccctgatga 279
             ||||||||||||||||||||
Sbjct: 43276 gatttgcaatgccctgatga 43295
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 65      gaaaagggctgcatcgtgcc 84
               ||||||||||||||||||||
Sbjct: 6107782 gaaaagggctgcatcgtgcc 6107763
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>gb|AC159636.3| Mus musculus BAC clone RP24-93H15 from chromosome 12, complete sequence
          Length = 184821

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gagagggttggtgggattta 312
             ||||||||||||||||||||
Sbjct: 67835 gagagggttggtgggattta 67854
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>emb|AL929405.8| Mouse DNA sequence from clone RP24-323B22 on chromosome 4, complete
             sequence
          Length = 118016

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    gaatttgaatgattttcaaa 44
             ||||||||||||||||||||
Sbjct: 53847 gaatttgaatgattttcaaa 53828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,480,729
Number of Sequences: 3902068
Number of extensions: 3480729
Number of successful extensions: 63635
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63540
Number of HSP's gapped (non-prelim): 95
length of query: 362
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 340
effective length of database: 17,147,199,772
effective search space: 5830047922480
effective search space used: 5830047922480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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