ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl56f02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189992.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2481 Score = 383 bits (193), Expect = e-103 Identities = 256/277 (92%) Strand = Plus / Plus Query: 134 agggcacctccacaggggatccgctgtacgacgagctctggcacgcctgcgccggcccgc 193 ||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || |||| Sbjct: 23 agggctcctccacaggggatccgctctacgacgagctgtggcacgcctgcgcggggccgc 82 Query: 194 tcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcagggccacatcgagc 253 ||||||||||||||||||| || ||| | |||| ||||||||||||||| |||||||||| Sbjct: 83 tcgtcaccgtgccgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagc 142 Query: 254 aggtggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgccct 313 |||||||||| |||||||||||||| |||| || |||||||||||||||||||||||||| Sbjct: 143 aggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgccct 202 Query: 314 ccaagctgctctgccgcgtcctcaacgtcgagctcaaggcggaggcggacaccgacgagg 373 |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct: 203 ccaagctgctttgccgtgtcctcaacgtcgagctcaaggcggagcaagacaccgacgagg 262 Query: 374 tctacgcgcaggtcatgctcatgccggagccggagca 410 ||||||||||||||||||||||||||||||| ||||| Sbjct: 263 tctacgcgcaggtcatgctcatgccggagcccgagca 299
>dbj|AK072309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022C23, full insert sequence Length = 3151 Score = 383 bits (193), Expect = e-103 Identities = 256/277 (92%) Strand = Plus / Plus Query: 134 agggcacctccacaggggatccgctgtacgacgagctctggcacgcctgcgccggcccgc 193 ||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || |||| Sbjct: 245 agggctcctccacaggggatccgctctacgacgagctgtggcacgcctgcgcggggccgc 304 Query: 194 tcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcagggccacatcgagc 253 ||||||||||||||||||| || ||| | |||| ||||||||||||||| |||||||||| Sbjct: 305 tcgtcaccgtgccgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagc 364 Query: 254 aggtggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgccct 313 |||||||||| |||||||||||||| |||| || |||||||||||||||||||||||||| Sbjct: 365 aggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgccct 424 Query: 314 ccaagctgctctgccgcgtcctcaacgtcgagctcaaggcggaggcggacaccgacgagg 373 |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct: 425 ccaagctgctttgccgtgtcctcaacgtcgagctcaaggcggagcaagacaccgacgagg 484 Query: 374 tctacgcgcaggtcatgctcatgccggagccggagca 410 ||||||||||||||||||||||||||||||| ||||| Sbjct: 485 tctacgcgcaggtcatgctcatgccggagcccgagca 521
>dbj|AB071293.1| Oryza sativa OsARF2 mRNA for auxin response factor 2, partial cds Length = 2376 Score = 363 bits (183), Expect = 3e-97 Identities = 243/263 (92%) Strand = Plus / Plus Query: 148 ggggatccgctgtacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtgccg 207 ||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 1 ggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtgccg 60 Query: 208 cgggtcggggacatggtctactacttcccgcagggccacatcgagcaggtggaggcctcc 267 ||||| || ||| | |||| ||||||||||||||| |||||||||||||||||||| ||| Sbjct: 61 cgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcaggtggaggcgtcc 120 Query: 268 atgaaccaggtcgccgccaaccagatgcgcctctacgatctgccctccaagctgctctgc 327 ||||||||||| |||| || |||||||||||||||||||||||||||||||||||| ||| Sbjct: 121 atgaaccaggttgccgacagccagatgcgcctctacgatctgccctccaagctgctttgc 180 Query: 328 cgcgtcctcaacgtcgagctcaaggcggaggcggacaccgacgaggtctacgcgcaggtc 387 || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 181 cgtgtcctcaacgtcgagctcaaggcggagcaagacaccgacgaggtctacgcgcaggtc 240 Query: 388 atgctcatgccggagccggagca 410 ||||||||||||||||| ||||| Sbjct: 241 atgctcatgccggagcccgagca 263
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 153 bits (77), Expect = 6e-34 Identities = 95/101 (94%) Strand = Plus / Plus Query: 252 gcaggtggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgcc 311 |||||||||||| |||||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 40688608 gcaggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgcc 40688667 Query: 312 ctccaagctgctctgccgcgtcctcaacgtcgagctcaagg 352 |||||||||||| ||||| |||||||||||||||||||||| Sbjct: 40688668 ctccaagctgctttgccgtgtcctcaacgtcgagctcaagg 40688708 Score = 147 bits (74), Expect = 3e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 146 caggggatccgctgtacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtgc 205 ||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||| Sbjct: 40688393 caggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtgc 40688452 Query: 206 cgcgggtcggggacatggtctactacttcccgcagggccacatcgagcaggtgg 259 ||||||| || ||| | |||| ||||||||||||||| |||||||||||||||| Sbjct: 40688453 cgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcaggtgg 40688506 Score = 87.7 bits (44), Expect = 3e-14 Identities = 44/44 (100%) Strand = Plus / Plus Query: 361 gacaccgacgaggtctacgcgcaggtcatgctcatgccggagcc 404 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 40688868 gacaccgacgaggtctacgcgcaggtcatgctcatgccggagcc 40688911
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 153 bits (77), Expect = 6e-34 Identities = 95/101 (94%) Strand = Plus / Plus Query: 252 gcaggtggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgcc 311 |||||||||||| |||||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 130586 gcaggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgcc 130645 Query: 312 ctccaagctgctctgccgcgtcctcaacgtcgagctcaagg 352 |||||||||||| ||||| |||||||||||||||||||||| Sbjct: 130646 ctccaagctgctttgccgtgtcctcaacgtcgagctcaagg 130686 Score = 147 bits (74), Expect = 3e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 146 caggggatccgctgtacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtgc 205 ||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||| Sbjct: 130371 caggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtgc 130430 Query: 206 cgcgggtcggggacatggtctactacttcccgcagggccacatcgagcaggtgg 259 ||||||| || ||| | |||| ||||||||||||||| |||||||||||||||| Sbjct: 130431 cgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcaggtgg 130484 Score = 87.7 bits (44), Expect = 3e-14 Identities = 44/44 (100%) Strand = Plus / Plus Query: 361 gacaccgacgaggtctacgcgcaggtcatgctcatgccggagcc 404 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130846 gacaccgacgaggtctacgcgcaggtcatgctcatgccggagcc 130889
>dbj|AK067061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091D19, full insert sequence Length = 3265 Score = 89.7 bits (45), Expect = 7e-15 Identities = 66/73 (90%) Strand = Plus / Plus Query: 211 gtcggggacatggtctactacttcccgcagggccacatcgagcaggtggaggcctccatg 270 |||||||| | ||||| |||| ||||||||||||||||||||||||||||||| || | | Sbjct: 428 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtggaggcatcgacg 487 Query: 271 aaccaggtcgccg 283 ||||||||||||| Sbjct: 488 aaccaggtcgccg 500
>dbj|AK065254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J11, full insert sequence Length = 3100 Score = 89.7 bits (45), Expect = 7e-15 Identities = 66/73 (90%) Strand = Plus / Plus Query: 211 gtcggggacatggtctactacttcccgcagggccacatcgagcaggtggaggcctccatg 270 |||||||| | ||||| |||| ||||||||||||||||||||||||||||||| || | | Sbjct: 279 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtggaggcatcgacg 338 Query: 271 aaccaggtcgccg 283 ||||||||||||| Sbjct: 339 aaccaggtcgccg 351
>emb|AJ306306.1|OSA306306 Oryza sativa subsp. japonica mRNA for auxin response factor 1 (arf1 gene) Length = 2511 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 181 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 240 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 85 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 144 Query: 241 ggccacatcgagcaggtggaggcctc 266 || ||||||||||||||||||||||| Sbjct: 145 gggcacatcgagcaggtggaggcctc 170
>dbj|AK065936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A03, full insert sequence Length = 3338 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 181 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 240 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 367 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 426 Query: 241 ggccacatcgagcaggtggaggcctc 266 || ||||||||||||||||||||||| Sbjct: 427 gggcacatcgagcaggtggaggcctc 452
>gb|AF140228.2| Oryza sativa (indica cultivar-group) putative auxin response factor 1 mRNA, partial cds Length = 2574 Score = 69.9 bits (35), Expect = 7e-09 Identities = 38/39 (97%) Strand = Plus / Plus Query: 228 ctacttcccgcagggccacatcgagcaggtggaggcctc 266 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 180 ctacttcccgcaggggcacatcgagcaggtggaggcctc 218
>gb|DQ013802.1| Phyllostachys praecox ARF1 mRNA, partial cds Length = 1108 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 228 ctacttcccgcagggccacatcgagcaggtggaggcctccatgaaccaggtcgccg 283 ||||||||| ||||| |||||||||||||| ||||| || | |||||||||||||| Sbjct: 156 ctacttccctcaggggcacatcgagcaggtcgaggcgtcgacgaaccaggtcgccg 211
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%), Gaps = 5/68 (7%) Strand = Plus / Plus Query: 285 caaccagatgcgcctctacgatctgccctccaagctgctctgccgcgtcctcaacgtcga 344 ||||||||||||||||||||||||||| | ||||||||| | ||||||||||| || Sbjct: 33117211 caaccagatgcgcctctacgatctgcc-----atctgctctgctgtgtcctcaacgttga 33117265 Query: 345 gctcaagg 352 |||||||| Sbjct: 33117266 gctcaagg 33117273
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 211 gtcggggacatggtctactacttcccgcagggccacatcgagcaggtg 258 |||||||| | ||||| |||| |||||||||||||||||||||||||| Sbjct: 17618225 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtg 17618178
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%), Gaps = 5/68 (7%) Strand = Plus / Plus Query: 285 caaccagatgcgcctctacgatctgccctccaagctgctctgccgcgtcctcaacgtcga 344 ||||||||||||||||||||||||||| | ||||||||| | ||||||||||| || Sbjct: 33207721 caaccagatgcgcctctacgatctgcc-----atctgctctgctgtgtcctcaacgttga 33207775 Query: 345 gctcaagg 352 |||||||| Sbjct: 33207776 gctcaagg 33207783 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 ggaggcggacaccgacgaggt 374 ||||||||||||||||||||| Sbjct: 24765551 ggaggcggacaccgacgaggt 24765571
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete sequence Length = 144487 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%), Gaps = 5/68 (7%) Strand = Plus / Minus Query: 285 caaccagatgcgcctctacgatctgccctccaagctgctctgccgcgtcctcaacgtcga 344 ||||||||||||||||||||||||||| | ||||||||| | ||||||||||| || Sbjct: 127344 caaccagatgcgcctctacgatctgcc-----atctgctctgctgtgtcctcaacgttga 127290 Query: 345 gctcaagg 352 |||||||| Sbjct: 127289 gctcaagg 127282
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%), Gaps = 5/68 (7%) Strand = Plus / Minus Query: 285 caaccagatgcgcctctacgatctgccctccaagctgctctgccgcgtcctcaacgtcga 344 ||||||||||||||||||||||||||| | ||||||||| | ||||||||||| || Sbjct: 6097 caaccagatgcgcctctacgatctgcc-----atctgctctgctgtgtcctcaacgttga 6043 Query: 345 gctcaagg 352 |||||||| Sbjct: 6042 gctcaagg 6035
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 211 gtcggggacatggtctactacttcccgcagggccacatcgagcaggtg 258 |||||||| | ||||| |||| |||||||||||||||||||||||||| Sbjct: 17572596 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtg 17572549
>emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162200 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 211 gtcggggacatggtctactacttcccgcagggccacatcgagcaggtg 258 |||||||| | ||||| |||| |||||||||||||||||||||||||| Sbjct: 110561 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtg 110514
>ref|NM_188673.1| Oryza sativa (japonica cultivar-group), Ozsa8276 predicted mRNA Length = 1842 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 335 tcaacgtcgagctcaaggcggaggcggacaccgacgaggtctacgcgcag 384 ||||||||||||||||||| ||| |||| ||||||||||| | ||||||| Sbjct: 224 tcaacgtcgagctcaaggccgagacggaaaccgacgaggtgttcgcgcag 273
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 181 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 240 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 133893 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 133834 Query: 241 ggccacatcgagcaggtg 258 || ||||||||||||||| Sbjct: 133833 gggcacatcgagcaggtg 133816
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 181 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 240 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 10662 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 10603 Query: 241 ggccacatcgagcaggtg 258 || ||||||||||||||| Sbjct: 10602 gggcacatcgagcaggtg 10585
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 181 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 240 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 42556 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 42497 Query: 241 ggccacatcgagcaggtg 258 || ||||||||||||||| Sbjct: 42496 gggcacatcgagcaggtg 42479
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 181 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 240 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 18275297 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 18275238 Query: 241 ggccacatcgagcaggtg 258 || ||||||||||||||| Sbjct: 18275237 gggcacatcgagcaggtg 18275220
>dbj|AK102521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095P08, full insert sequence Length = 2538 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 335 tcaacgtcgagctcaaggcggaggcggacaccgacgaggtctacgcgcag 384 ||||||||||||||||||| ||| |||| ||||||||||| | ||||||| Sbjct: 289 tcaacgtcgagctcaaggccgagacggaaaccgacgaggtgttcgcgcag 338
>dbj|AK064007.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-G08, full insert sequence Length = 2518 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 335 tcaacgtcgagctcaaggcggaggcggacaccgacgaggtctacgcgcag 384 ||||||||||||||||||| ||| |||| ||||||||||| | ||||||| Sbjct: 256 tcaacgtcgagctcaaggccgagacggaaaccgacgaggtgttcgcgcag 305
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 181 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 240 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 18434577 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 18434518 Query: 241 ggccacatcgagcaggtg 258 || ||||||||||||||| Sbjct: 18434517 gggcacatcgagcaggtg 18434500
>dbj|AB071300.1| Oryza sativa OsARF16 mRNA for auxin response factor 16, partial cds Length = 2088 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 335 tcaacgtcgagctcaaggcggaggcggacaccgacgaggtctacgcgcag 384 ||||||||||||||||||| ||| |||| ||||||||||| | ||||||| Sbjct: 212 tcaacgtcgagctcaaggccgagacggaaaccgacgaggtgttcgcgcag 261
>ref|XM_474307.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2457 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 166 gagctctggcacgcctgcgccggcccgctcgtc 198 ||||| ||||||||||||||||||||||||||| Sbjct: 91 gagctatggcacgcctgcgccggcccgctcgtc 123 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 228 ctacttcccgcagggccacatcgagcaggtgg 259 |||||||||||| ||||||| ||||||||||| Sbjct: 153 ctacttcccgcaaggccacagcgagcaggtgg 184
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17, complete sequence Length = 159894 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 166 gagctctggcacgcctgcgccggcccgctcgtc 198 ||||| ||||||||||||||||||||||||||| Sbjct: 43419 gagctatggcacgcctgcgccggcccgctcgtc 43387 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Minus Query: 228 ctacttcccgcagggccacatcgagcaggtg 258 |||||||||||| ||||||| |||||||||| Sbjct: 43357 ctacttcccgcaaggccacagcgagcaggtg 43327
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 166 gagctctggcacgcctgcgccggcccgctcgtc 198 ||||| ||||||||||||||||||||||||||| Sbjct: 34319016 gagctatggcacgcctgcgccggcccgctcgtc 34318984 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Minus Query: 228 ctacttcccgcagggccacatcgagcaggtg 258 |||||||||||| ||||||| |||||||||| Sbjct: 34318954 ctacttcccgcaaggccacagcgagcaggtg 34318924 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 tactacttcccgcagggccac 246 ||||||||||||||||||||| Sbjct: 25986973 tactacttcccgcagggccac 25986993
>dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093B04, full insert sequence Length = 3262 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 166 gagctctggcacgcctgcgccggcccgctcgtc 198 ||||| ||||||||||||||||||||||||||| Sbjct: 426 gagctatggcacgcctgcgccggcccgctcgtc 458 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 228 ctacttcccgcagggccacatcgagcaggtgg 259 |||||||||||| ||||||| ||||||||||| Sbjct: 488 ctacttcccgcaaggccacagcgagcaggtgg 519
>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete sequence Length = 95419 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 166 gagctctggcacgcctgcgccggcccgctcgtc 198 ||||| ||||||||||||||||||||||||||| Sbjct: 91307 gagctatggcacgcctgcgccggcccgctcgtc 91275 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Minus Query: 228 ctacttcccgcagggccacatcgagcaggtg 258 |||||||||||| ||||||| |||||||||| Sbjct: 91245 ctacttcccgcaaggccacagcgagcaggtg 91215
>emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0322F07, complete sequence Length = 100419 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 166 gagctctggcacgcctgcgccggcccgctcgtc 198 ||||| ||||||||||||||||||||||||||| Sbjct: 4172 gagctatggcacgcctgcgccggcccgctcgtc 4140 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Minus Query: 228 ctacttcccgcagggccacatcgagcaggtg 258 |||||||||||| ||||||| |||||||||| Sbjct: 4110 ctacttcccgcaaggccacagcgagcaggtg 4080
>dbj|AB071298.1| Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds Length = 2388 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 166 gagctctggcacgcctgcgccggcccgctcgtc 198 ||||| ||||||||||||||||||||||||||| Sbjct: 22 gagctatggcacgcctgcgccggcccgctcgtc 54 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 228 ctacttcccgcagggccacatcgagcaggtgg 259 |||||||||||| ||||||| ||||||||||| Sbjct: 84 ctacttcccgcaaggccacagcgagcaggtgg 115
>emb|AJ716227.1| Brassica napus mRNA for putative auxin response factor (ARF2 gene) Length = 2547 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 223 gtctactacttcccgcagggccacatcgagcaggtgga 260 |||| ||||||||| ||||| ||||||||||||||||| Sbjct: 223 gtcttctacttccctcaggggcacatcgagcaggtgga 260
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 166 gagctctggcacgcctgcgccggcccgctcgtc 198 |||||||||||||||||| || ||||||||||| Sbjct: 28541929 gagctctggcacgcctgctccagcccgctcgtc 28541961 Score = 48.1 bits (24), Expect = 0.024 Identities = 75/92 (81%) Strand = Plus / Minus Query: 166 gagctctggcacgcctgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtc 225 ||||| |||||||| ||||||||||||||||| | |||||| ||| || | | ||| Sbjct: 2214437 gagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggcagcctcgtc 2214378 Query: 226 tactacttcccgcagggccacatcgagcaggt 257 |||||||||||| ||||||| ||||||||| Sbjct: 2214377 gtctacttcccgcaaggccacagcgagcaggt 2214346 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Plus Query: 228 ctacttcccgcagggccacatcgagcaggtg 258 |||||||||||| ||||||| |||||||||| Sbjct: 28541991 ctacttcccgcaaggccacagcgagcaggtg 28542021
>dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1053A04 Length = 144321 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 166 gagctctggcacgcctgcgccggcccgctcgtc 198 |||||||||||||||||| || ||||||||||| Sbjct: 5942 gagctctggcacgcctgctccagcccgctcgtc 5974 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Plus Query: 228 ctacttcccgcagggccacatcgagcaggtg 258 |||||||||||| ||||||| |||||||||| Sbjct: 6004 ctacttcccgcaaggccacagcgagcaggtg 6034
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 166 gagctctggcacgcctgcgccggcccgctcgtc 198 |||||||||||||||||| || ||||||||||| Sbjct: 110770 gagctctggcacgcctgctccagcccgctcgtc 110802 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Plus Query: 228 ctacttcccgcagggccacatcgagcaggtg 258 |||||||||||| ||||||| |||||||||| Sbjct: 110832 ctacttcccgcaaggccacagcgagcaggtg 110862
>ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3420 Score = 48.1 bits (24), Expect = 0.024 Identities = 75/92 (81%) Strand = Plus / Plus Query: 166 gagctctggcacgcctgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtc 225 ||||| |||||||| ||||||||||||||||| | |||||| ||| || | | ||| Sbjct: 121 gagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggcagcctcgtc 180 Query: 226 tactacttcccgcagggccacatcgagcaggt 257 |||||||||||| ||||||| ||||||||| Sbjct: 181 gtctacttcccgcaaggccacagcgagcaggt 212
>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_E07 Length = 113187 Score = 48.1 bits (24), Expect = 0.024 Identities = 75/92 (81%) Strand = Plus / Minus Query: 166 gagctctggcacgcctgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtc 225 ||||| |||||||| ||||||||||||||||| | |||||| ||| || | | ||| Sbjct: 1386 gagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggcagcctcgtc 1327 Query: 226 tactacttcccgcagggccacatcgagcaggt 257 |||||||||||| ||||||| ||||||||| Sbjct: 1326 gtctacttcccgcaaggccacagcgagcaggt 1295
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1679_B08 Length = 142529 Score = 48.1 bits (24), Expect = 0.024 Identities = 75/92 (81%) Strand = Plus / Minus Query: 166 gagctctggcacgcctgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtc 225 ||||| |||||||| ||||||||||||||||| | |||||| ||| || | | ||| Sbjct: 129130 gagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggcagcctcgtc 129071 Query: 226 tactacttcccgcagggccacatcgagcaggt 257 |||||||||||| ||||||| ||||||||| Sbjct: 129070 gtctacttcccgcaaggccacagcgagcaggt 129039
>ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription factor AT5G62000 (ARF2) transcript variant AT5G62000.2 mRNA, complete cds Length = 3384 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 634 cacatcgagcaggtggaggcttcgacgaaccagg 667
>ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2) AT5G62000 (ARF2) transcript variant AT5G62000.3 mRNA, complete cds Length = 3387 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 634 cacatcgagcaggtggaggcttcgacgaaccagg 667
>ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription factor AT5G62000 (ARF2) transcript variant AT5G62000.1 mRNA, complete cds Length = 3513 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 760 cacatcgagcaggtggaggcttcgacgaaccagg 793
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 333 cctcaacgtcgagctcaaggcg 354 |||||||||||||||||||||| Sbjct: 1702923 cctcaacgtcgagctcaaggcg 1702902
>gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA, complete cds Length = 2037 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 259 cacatcgagcaggtggaggcttcgacgaaccagg 292
>gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R10939) auxin response factor (At5g62000) mRNA, complete cds Length = 3498 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 760 cacatcgagcaggtggaggcttcgacgaaccagg 793
>dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-31-F22 Length = 3335 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 568 cacatcgagcaggtggaggcttcgacgaaccagg 601
>dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-19-K22 Length = 3275 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 547 cacatcgagcaggtggaggcttcgacgaaccagg 580
>dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-18-M11 Length = 3316 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 549 cacatcgagcaggtggaggcttcgacgaaccagg 582
>dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-16-M02 Length = 3317 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 597 cacatcgagcaggtggaggcttcgacgaaccagg 630
>dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-09-L23 Length = 3317 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 597 cacatcgagcaggtggaggcttcgacgaaccagg 630
>dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-07-O11 Length = 3317 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 597 cacatcgagcaggtggaggcttcgacgaaccagg 630
>gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10_20 mRNA, complete cds Length = 3171 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 599 cacatcgagcaggtggaggcttcgacgaaccagg 632
>gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5g62000) mRNA, complete cds Length = 2772 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 244 cacatcgagcaggtggaggcctccatgaaccagg 277 |||||||||||||||||||| || | |||||||| Sbjct: 259 cacatcgagcaggtggaggcttcgacgaaccagg 292
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 156 gctgtacgacgagctctggcacgcct 181 ||||||||||||||||||||| |||| Sbjct: 542525 gctgtacgacgagctctggcaggcct 542550
>gb|AY838899.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 3 (NCED3) mRNA, complete cds Length = 2060 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 ggaggcggacaccgacgaggt 374 ||||||||||||||||||||| Sbjct: 1439 ggaggcggacaccgacgaggt 1459
>ref|XM_473206.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2088 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 tactacttcccgcagggccac 246 ||||||||||||||||||||| Sbjct: 112 tactacttcccgcagggccac 132
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 ggaggcggacaccgacgaggt 374 ||||||||||||||||||||| Sbjct: 144240 ggaggcggacaccgacgaggt 144260
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 cggcccgctcgtcaccgtgccgcgg 210 ||||||| ||||||||||||||||| Sbjct: 962603 cggcccgatcgtcaccgtgccgcgg 962627
>dbj|AK100795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121F07, full insert sequence Length = 2826 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 tactacttcccgcagggccac 246 ||||||||||||||||||||| Sbjct: 168 tactacttcccgcagggccac 188
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence Length = 163039 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 tactacttcccgcagggccac 246 ||||||||||||||||||||| Sbjct: 21300 tactacttcccgcagggccac 21320
>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence Length = 139226 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 tactacttcccgcagggccac 246 ||||||||||||||||||||| Sbjct: 113235 tactacttcccgcagggccac 113255
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 322 ctctgccgcgtcctcaacgtcgagctcaa 350 |||| ||| |||||||||||||||||||| Sbjct: 635589 ctcttccgggtcctcaacgtcgagctcaa 635617
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02, complete sequence Length = 157106 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 cgagctctggcacgcctgcgccgg 188 |||||| ||||||||||||||||| Sbjct: 44804 cgagctgtggcacgcctgcgccgg 44827
>ref|XM_958709.1| Neurospora crassa OR74A hypothetical protein (NCU00802.1) partial mRNA Length = 1716 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ctggcacgcctgcgccggcc 190 |||||||||||||||||||| Sbjct: 51 ctggcacgcctgcgccggcc 32
>ref|XM_324981.1| Neurospora crassa OR74A hypothetical protein (NCU00802.1) partial mRNA Length = 1716 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ctggcacgcctgcgccggcc 190 |||||||||||||||||||| Sbjct: 51 ctggcacgcctgcgccggcc 32
>ref|XM_985714.1| PREDICTED: Mus musculus hypothetical protein LOC675872 (LOC675872), mRNA Length = 708 Score = 40.1 bits (20), Expect = 5.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 400 gagccggagcanagtgaggcggcggcg 426 ||||||||||| |||| |||||||||| Sbjct: 653 gagccggagcagagtgtggcggcggcg 679
>ref|XM_901517.2| PREDICTED: Mus musculus hypothetical LOC629517 (LOC629517), mRNA Length = 630 Score = 40.1 bits (20), Expect = 5.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 400 gagccggagcanagtgaggcggcggcg 426 ||||||||||| |||| |||||||||| Sbjct: 575 gagccggagcagagtgtggcggcggcg 601
>gb|AC152061.6| Mus musculus BAC clone RP23-351K4 from chromosome 12, complete sequence Length = 206383 Score = 40.1 bits (20), Expect = 5.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 400 gagccggagcanagtgaggcggcggcg 426 ||||||||||| |||| |||||||||| Sbjct: 131965 gagccggagcagagtgtggcggcggcg 131991
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 gctcgtcaccgtgccgcgggtcgg 215 |||||||||||||| ||||||||| Sbjct: 1733792 gctcgtcaccgtgcggcgggtcgg 1733769
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 gccggcccgctcgtcaccgtgccg 207 |||||||||||| ||||||||||| Sbjct: 1559767 gccggcccgctcttcaccgtgccg 1559744
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 tgaggcggcggcgacgacga 433 |||||||||||||||||||| Sbjct: 8930555 tgaggcggcggcgacgacga 8930574
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 agtgaggcggcggcgacgac 431 |||||||||||||||||||| Sbjct: 10664772 agtgaggcggcggcgacgac 10664791
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 cgagctctggcacgcctgcgccgg 188 |||||| ||||||||||||||||| Sbjct: 27814387 cgagctgtggcacgcctgcgccgg 27814410
>gb|AE004480.1| Pseudomonas aeruginosa PAO1, section 41 of 529 of the complete genome Length = 10910 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 caccgacgaggtctacgcgc 382 |||||||||||||||||||| Sbjct: 9253 caccgacgaggtctacgcgc 9272
>dbj|AP005189.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0474B11 Length = 141702 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 agtgaggcggcggcgacgac 431 |||||||||||||||||||| Sbjct: 107436 agtgaggcggcggcgacgac 107455
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 gagctcaaggcggaggcggacacc 366 |||||||||||||||| ||||||| Sbjct: 847583 gagctcaaggcggaggtggacacc 847606
>dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0045M11 Length = 159148 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 tgaggcggcggcgacgacga 433 |||||||||||||||||||| Sbjct: 90862 tgaggcggcggcgacgacga 90881
>dbj|AK099793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E23, full insert sequence Length = 2712 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 cgagctctggcacgcctgcgccgg 188 |||||| ||||||||||||||||| Sbjct: 335 cgagctgtggcacgcctgcgccgg 358
>gb|L13969.1|MUSTRANS01 Mouse delta/YY1/NF-E1/UCRBP transcription factor, exon 1 Length = 3041 Score = 40.1 bits (20), Expect = 5.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 400 gagccggagcanagtgaggcggcggcg 426 ||||||||||| |||| |||||||||| Sbjct: 1766 gagccggagcagagtgtggcggcggcg 1792
>dbj|AB071290.1| Oryza sativa OsETTIN1 mRNA for Arabidopsis ETTIN-like protein 1, complete cds Length = 2622 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 cgagctctggcacgcctgcgccgg 188 |||||| ||||||||||||||||| Sbjct: 227 cgagctgtggcacgcctgcgccgg 250 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,844,542 Number of Sequences: 3902068 Number of extensions: 1844542 Number of successful extensions: 47114 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45705 Number of HSP's gapped (non-prelim): 1405 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
