>U5S1_HUMAN (Q15029) 116 kDa U5 small nuclear ribonucleoprotein component (U5|
           snRNP-specific protein, 116 kDa) (U5-116 kDa)
           (Elongation factor Tu GTP-binding domain protein 2)
           (hSNU114)
          Length = 972

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +1

Query: 337 LAEDKKYYPTAEEVYGPGVEALVMDEDEQAL 429
           L EDKKYYPTAEEVYGP VE +V +ED Q L
Sbjct: 59  LHEDKKYYPTAEEVYGPEVETIVQEEDTQPL 89



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 115 MDDSLYDEFGNYI 153
           MD  LYDEFGNYI
Sbjct: 1   MDTDLYDEFGNYI 13

>U5S1_MOUSE (O08810) 116 kDa U5 small nuclear ribonucleoprotein component (U5|
           snRNP-specific protein, 116 kDa) (U5-116 kDa)
           (Elongation factor Tu GTP-binding domain protein 2)
          Length = 971

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +1

Query: 337 LAEDKKYYPTAEEVYGPGVEALVMDEDEQAL 429
           L EDKKYYPTAEEVYGP VE +V +ED Q L
Sbjct: 58  LHEDKKYYPTAEEVYGPEVETIVQEEDTQPL 88



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 115 MDDSLYDEFGNYI 153
           MD  LYDEFGNYI
Sbjct: 1   MDTDLYDEFGNYI 13

>TRA2_CAEEL (P34709) Sex-determining transformer protein 2 precursor (Ce-Tra-2)|
          Length = 1475

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 20   PPLPSHPKSQTSPASFRRP 76
            P LP HP++   PASF RP
Sbjct: 1369 PNLPPHPRADQYPASFTRP 1387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,767,626
Number of Sequences: 219361
Number of extensions: 82993
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)