>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)|
          Length = 859

 Score =  141 bits (355), Expect = 1e-33
 Identities = 68/82 (82%), Positives = 71/82 (86%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           LY ELWHACAGPLVTVPR  D VFYFPQGHIEQVEAS NQ A  QM LYDLP KLLCRVI
Sbjct: 58  LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVI 117

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
           NV+LKAEADTDEVYAQ+ L+PE
Sbjct: 118 NVDLKAEADTDEVYAQITLLPE 139

>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score =  117 bits (293), Expect = 2e-26
 Identities = 52/84 (61%), Positives = 69/84 (82%)
 Frame = +1

Query: 223 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCR 402
           D L  ELWHACAGPLVT+PR G+ V+YFP+GH+EQ+EASM+Q    QM  ++LP K+LC+
Sbjct: 17  DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 76

Query: 403 VINVELKAEADTDEVYAQVMLMPE 474
           VIN++ +AE +TDEVYAQ+ L+PE
Sbjct: 77  VINIQRRAEPETDEVYAQITLLPE 100

>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score =  117 bits (292), Expect = 2e-26
 Identities = 56/88 (63%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
 Frame = +1

Query: 214 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQ-VAGNQMRLYDLPPK 390
           S  D LY ELW ACAGPLV VPR G+ VFYFPQGH+EQ+ AS NQ V   ++ +++LPPK
Sbjct: 13  SNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPK 72

Query: 391 LLCRVINVELKAEADTDEVYAQVMLMPE 474
           +LCRV++V LKAE +TDEVYAQ+ L PE
Sbjct: 73  ILCRVLSVTLKAEHETDEVYAQITLQPE 100

>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score =  113 bits (283), Expect = 2e-25
 Identities = 53/85 (62%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
 Frame = +1

Query: 223 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQ-VAGNQMRLYDLPPKLLC 399
           D LY ELW  CAGPLV VPR  + VFYFPQGH+EQ+ AS NQ +   ++ ++DLPPK+LC
Sbjct: 20  DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILC 79

Query: 400 RVINVELKAEADTDEVYAQVMLMPE 474
           RV++V LKAE +TDEVYAQ+ L PE
Sbjct: 80  RVLDVTLKAEHETDEVYAQITLQPE 104

>ARFI_ARATH (Q9XED8) Auxin response factor 9|
          Length = 638

 Score =  113 bits (282), Expect = 3e-25
 Identities = 54/85 (63%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
 Frame = +1

Query: 220 GDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMR-LYDLPPKLL 396
           G+ LYDELW  CAGPLV VP+  + V+YFPQGH+EQ+EAS  QV  N M+ L+ LPPK+L
Sbjct: 6   GEYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKIL 65

Query: 397 CRVINVELKAEADTDEVYAQVMLMP 471
           C V+NV L+AE DTDEVYAQ+ L+P
Sbjct: 66  CNVMNVSLQAEKDTDEVYAQITLIP 90

>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 43/81 (53%), Positives = 62/81 (76%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y ELWHACAGPL  +P+ G++V YFPQGH+EQ +A ++  +  ++  +DL P+++CRV+
Sbjct: 62  IYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ-DAMVSYSSPLEIPKFDLNPQIVCRVV 120

Query: 409 NVELKAEADTDEVYAQVMLMP 471
           NV+L A  DTDEVY QV L+P
Sbjct: 121 NVQLLANKDTDEVYTQVTLLP 141

>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14|
          Length = 605

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 41/82 (50%), Positives = 58/82 (70%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VEAS  +       + D P KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            ++LK E ++DE YA++ LMP+
Sbjct: 84  AIQLKVENNSDETYAEITLMPD 105

>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)|
          Length = 608

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 46/87 (52%), Positives = 59/87 (67%)
 Frame = +1

Query: 214 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKL 393
           SAG  +  ELWHACAGPL+++P+ G LV YFPQGH+E       Q       +Y LPP +
Sbjct: 46  SAGGGVCLELWHACAGPLISLPKRGSLVLYFPQGHLE-------QAPDFSAAIYGLPPHV 98

Query: 394 LCRVINVELKAEADTDEVYAQVMLMPE 474
            CR+++V+L AE  TDEVYAQV L+PE
Sbjct: 99  FCRILDVKLHAETTTDEVYAQVSLLPE 125

>ARFM_ARATH (Q9FX25) Putative auxin response factor 13|
          Length = 623

 Score = 95.5 bits (236), Expect = 6e-20
 Identities = 40/82 (48%), Positives = 59/82 (71%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW+ CAGPL  +P+ G+ V+YFPQGHIE +E S      +   ++DLP KL CRV+
Sbjct: 24  MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVV 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            ++ K + +TDEVYAQ+ LMP+
Sbjct: 84  AIDRKVDKNTDEVYAQISLMPD 105

>ARFL_ARATH (Q9XID4) Putative auxin response factor 12|
          Length = 593

 Score = 95.5 bits (236), Expect = 6e-20
 Identities = 41/82 (50%), Positives = 57/82 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VE S  +       + DLP KL CRVI
Sbjct: 24  VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            + LK E ++DE YA++ LMP+
Sbjct: 84  AIHLKVENNSDETYAEITLMPD 105

>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22|
          Length = 598

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 40/82 (48%), Positives = 59/82 (71%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ ++YFPQG+IE VEAS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            ++LK E ++DE YA++ LMP+
Sbjct: 84  AIQLKVENNSDETYAEITLMPD 105

>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21|
          Length = 606

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 40/82 (48%), Positives = 59/82 (71%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE V+AS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            + LK E ++DE+YA++ LMP+
Sbjct: 84  AIHLKVENNSDEIYAEITLMPD 105

>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15|
          Length = 593

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 41/82 (50%), Positives = 58/82 (70%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE VEAS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            + LK E ++DE YA++ LMP+
Sbjct: 84  AIHLKVENNSDETYAKITLMPD 105

>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 45/82 (54%), Positives = 57/82 (69%)
 Frame = +1

Query: 226 PLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRV 405
           P+  +LWHACAGPLV++P VG LV YFPQGH EQV ASM +         +LP KL+C +
Sbjct: 19  PINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICLL 78

Query: 406 INVELKAEADTDEVYAQVMLMP 471
            +V L A+ +TDEVYAQ+ L P
Sbjct: 79  HSVTLHADTETDEVYAQMTLQP 100

>ARFW_ARATH (Q9LP07) Putative auxin response factor 23|
          Length = 222

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 41/82 (50%), Positives = 56/82 (68%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VEAS  +         DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            + LK E ++DE Y ++ LMP+
Sbjct: 84  AIHLKVENNSDETYVEITLMPD 105

>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)|
           (Auxin-responsive protein IAA24)
          Length = 902

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLY-DLPPKLLCRVINV 414
           ELWHACAGPLV +P+VG LV+YF QGH EQV  S  + A  Q+  Y +LP +L+C+V NV
Sbjct: 54  ELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNV 113

Query: 415 ELKAEADTDEVYAQVMLMP 471
            L A+ D+DE+YAQ+ L P
Sbjct: 114 TLHADKDSDEIYAQMSLQP 132

>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20|
          Length = 606

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 40/82 (48%), Positives = 58/82 (70%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE V+AS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDEVYAQVMLMPE 474
            + LK E ++DE YA++ LMP+
Sbjct: 84  AIHLKVENNSDETYAEITLMPD 105

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMN-QVAGNQMRLYDLPPKLLCRV 405
           L  ELWHACAGPLV++P  G  V YFPQGH EQV A+ N +V G+      LPP+L+C++
Sbjct: 19  LNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQL 78

Query: 406 INVELKAEADTDEVYAQVMLMP 471
            NV + A+ +TDEVYAQ+ L P
Sbjct: 79  HNVTMHADVETDEVYAQMTLQP 100

>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 44/78 (56%), Positives = 54/78 (69%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINVE 417
           ELWHACAGPL+++P  G LV YFPQGH EQV ASM +         +LP KL+C + NV 
Sbjct: 24  ELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVT 83

Query: 418 LKAEADTDEVYAQVMLMP 471
           L A+ +TDEVYAQ+ L P
Sbjct: 84  LNADPETDEVYAQMTLQP 101

>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 45/82 (54%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLY-DLPPKLLCRV 405
           L  ELWHACAGPLV++P VG  V YFPQGH EQV AS N+     +  Y  L P+L+C++
Sbjct: 20  LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQL 79

Query: 406 INVELKAEADTDEVYAQVMLMP 471
            NV + A+ +TDEVYAQ+ L P
Sbjct: 80  HNVTMHADVETDEVYAQMTLQP 101

>ARFJ_ARATH (Q9SKN5) Auxin response factor 10|
          Length = 693

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 35/78 (44%), Positives = 51/78 (65%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINVE 417
           +LWHACAG +V +P +   VFYF QGH E   A  +  A        +PP +LCRV++V+
Sbjct: 10  QLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHAPR------VPPLILCRVVSVK 63

Query: 418 LKAEADTDEVYAQVMLMP 471
             A+A+TDEV+A++ L+P
Sbjct: 64  FLADAETDEVFAKITLLP 81

>ARFP_ARATH (Q93YR9) Auxin response factor 16|
          Length = 670

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 34/78 (43%), Positives = 52/78 (66%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINVE 417
           +LWHACAG +V +P +   VFYFPQGH E     ++   GN      +PP +LCRV+ ++
Sbjct: 19  QLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVD--FGN----LPIPPMVLCRVLAIK 72

Query: 418 LKAEADTDEVYAQVMLMP 471
             A+A++DEV+A++ L+P
Sbjct: 73  YMADAESDEVFAKLRLIP 90

>ARFQ_ARATH (Q84WU6) Auxin response factor 17|
          Length = 585

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
 Frame = +1

Query: 214 SAGDPLYDE----LWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDL 381
           +AGD  + E    +W ACAG  V +P +   V+YFPQGH+E     ++ +  +       
Sbjct: 7   TAGDINHREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSS------- 59

Query: 382 PPKLLCRVINVELKAEADTDEVYAQVMLMP 471
              + C + +++L A+  TDEV+A ++L P
Sbjct: 60  TSPVPCIITSIQLLADPVTDEVFAHLILQP 89

>HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog (Light-ear|
           protein) (Le protein)
          Length = 671

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +1

Query: 280 RVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDL--PPKLLCRVINVELKAEADTDEVYA 453
           R G   FY PQ  ++Q E    Q+AG    L+DL   P +L R+ N++    AD D ++A
Sbjct: 34  RAGICYFYPPQTLLDQQELLCGQLAGVVRCLWDLSGTPPMLIRMRNLKFAIRADGDYLWA 93

>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2304

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 274  VPRVGDLVFYFPQGHIEQVEA 336
            VP++GD V YFPQGH   +EA
Sbjct: 959  VPQMGDEVIYFPQGHEAYIEA 979

>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)|
            [Includes: ATP-dependent asparagine adenylase (AsnA)
            (Asparagine activase); ATP-dependent glutamine adenylase
            (GlnA) (Glutamine activase); ATP-dependent tyrosine
            adenylase (TyrA) (Ty
          Length = 6486

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 271  TVPRVGDLVFYFPQGHIEQVEASMNQV--AGNQMRLYDLPPKLL 396
            T+ R GD+V Y P GHIE +    +QV   G+++ L ++   LL
Sbjct: 1871 TMYRTGDMVRYLPDGHIEYLGRIDHQVKIRGHRIELGEIEATLL 1914

>BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2320

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 274  VPRVGDLVFYFPQGHIEQVEA 336
            VP++GD V YF QGH   +EA
Sbjct: 958  VPQMGDEVIYFRQGHEAYIEA 978


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,459,624
Number of Sequences: 219361
Number of extensions: 288239
Number of successful extensions: 1129
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)