ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56e04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008960.1| Triticum aestivum clone wdk1c.pk012.i2:fis, full insert mRNA sequence Length = 2815 Score = 266 bits (134), Expect = 6e-68 Identities = 186/202 (92%), Gaps = 1/202 (0%) Strand = Plus / Plus Query: 272 aagaggggaaatcctatacagcttgttaccaatcatttcaaagtttcgttgaagacaaca 331 |||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||| Sbjct: 1 aagaggggaaatcctatacagcttgtgacaaatcatttcaaagtctcgttgaagacgaca 60 Query: 332 gatgagttcttccaccattactatgtaaatctgaagtatgaagatgacaggcctgttgat 391 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacgagttcttccatcattactatgtaaatctgaagtatgaagatgacaggcctgttgat 120 Query: 392 ggaaaaggtgttggtagaaaagtcattgataaactgcagcagacttatgcatctgatcta 451 |||||||||||||||||||||||||||||||| || ||||||||| |||| || ||| Sbjct: 121 ggaaaaggtgttggtagaaaagtcattgataagcttgctcagacttatccatcggaacta 180 Query: 452 gctcat-aagactttgcctatg 472 || ||| ||||||||||||||| Sbjct: 181 gcccataaagactttgcctatg 202
>ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Ozsa8518 predicted mRNA Length = 2715 Score = 56.0 bits (28), Expect = 1e-04 Identities = 112/140 (80%) Strand = Plus / Plus Query: 308 ttcaaagtttcgttgaagacaacagatgagttcttccaccattactatgtaaatctgaag 367 ||||| ||||| ||||| || |||| || || ||||| || |||||||| ||||||||| Sbjct: 175 ttcaaggtttcactgaaggcagcagacgaatttttccatcactactatgttaatctgaag 234 Query: 368 tatgaagatgacaggcctgttgatggaaaaggtgttggtagaaaagtcattgataaactg 427 ||||| ||||| || || || |||||||| || | |||||||| || | || ||||| Sbjct: 235 tatgaggatgatagaccagtggatggaaagggcataggtagaaaggtgctggacaaactc 294 Query: 428 cagcagacttatgcatctga 447 |||||||| ||||| ||||| Sbjct: 295 cagcagacctatgcgtctga 314
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11, complete sequence Length = 127419 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 361 tctgaagtatgaagatgacaggcctgttgatggaaaaggtgttggtagaaaagtcattga 420 |||||||||||| ||||| | || |||||||| ||||| || ||| |||| || ||||| Sbjct: 126466 tctgaagtatgaggatgatcgaccggttgatgggaaaggggtaggtcgaaaggtgattga 126407 Query: 421 taaactgcagca 432 |||||||||||| Sbjct: 126406 taaactgcagca 126395
>emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0040D15, complete sequence Length = 130618 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 361 tctgaagtatgaagatgacaggcctgttgatggaaaaggtgttggtagaaaagtcattga 420 |||||||||||| ||||| | || |||||||| ||||| || ||| |||| || ||||| Sbjct: 3437 tctgaagtatgaggatgatcgaccggttgatgggaaaggggtaggtcgaaaggtgattga 3378 Query: 421 taaactgcagca 432 |||||||||||| Sbjct: 3377 taaactgcagca 3366
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 361 tctgaagtatgaagatgacaggcctgttgatggaaaaggtgttggtagaaaagtcattga 420 |||||||||||| ||||| | || |||||||| ||||| || ||| |||| || ||||| Sbjct: 3537171 tctgaagtatgaggatgatcgaccggttgatgggaaaggggtaggtcgaaaggtgattga 3537112 Query: 421 taaactgcagca 432 |||||||||||| Sbjct: 3537111 taaactgcagca 3537100
>dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119H08, full insert sequence Length = 3385 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 361 tctgaagtatgaagatgacaggcctgttgatggaaaaggtgttggtagaaaagtcattga 420 |||||||||||| ||||| | || |||||||| ||||| || ||| |||| || ||||| Sbjct: 547 tctgaagtatgaggatgatcgaccggttgatgggaaaggggtaggtcgaaaggtgattga 606 Query: 421 taaactgcagca 432 |||||||||||| Sbjct: 607 taaactgcagca 618
>dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111L20, full insert sequence Length = 3027 Score = 56.0 bits (28), Expect = 1e-04 Identities = 112/140 (80%) Strand = Plus / Plus Query: 308 ttcaaagtttcgttgaagacaacagatgagttcttccaccattactatgtaaatctgaag 367 ||||| ||||| ||||| || |||| || || ||||| || |||||||| ||||||||| Sbjct: 323 ttcaaggtttcactgaaggcagcagacgaatttttccatcactactatgttaatctgaag 382 Query: 368 tatgaagatgacaggcctgttgatggaaaaggtgttggtagaaaagtcattgataaactg 427 ||||| ||||| || || || |||||||| || | |||||||| || | || ||||| Sbjct: 383 tatgaggatgatagaccagtggatggaaagggcataggtagaaaggtgctggacaaactc 442 Query: 428 cagcagacttatgcatctga 447 |||||||| ||||| ||||| Sbjct: 443 cagcagacctatgcgtctga 462
>dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L10, full insert sequence Length = 3178 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 361 tctgaagtatgaagatgacaggcctgttgatggaaaaggtgttggtagaaaagtcattga 420 |||||||||||| ||||| | || |||||||| ||||| || ||| |||| || ||||| Sbjct: 366 tctgaagtatgaggatgatcgaccggttgatgggaaaggggtaggtcgaaaggtgattga 425 Query: 421 taaactgcagca 432 |||||||||||| Sbjct: 426 taaactgcagca 437
>dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E08, full insert sequence Length = 3047 Score = 56.0 bits (28), Expect = 1e-04 Identities = 112/140 (80%) Strand = Plus / Plus Query: 308 ttcaaagtttcgttgaagacaacagatgagttcttccaccattactatgtaaatctgaag 367 ||||| ||||| ||||| || |||| || || ||||| || |||||||| ||||||||| Sbjct: 335 ttcaaggtttcactgaaggcagcagacgaatttttccatcactactatgttaatctgaag 394 Query: 368 tatgaagatgacaggcctgttgatggaaaaggtgttggtagaaaagtcattgataaactg 427 ||||| ||||| || || || |||||||| || | |||||||| || | || ||||| Sbjct: 395 tatgaggatgatagaccagtggatggaaagggcataggtagaaaggtgctggacaaactc 454 Query: 428 cagcagacttatgcatctga 447 |||||||| ||||| ||||| Sbjct: 455 cagcagacctatgcgtctga 474
>gb|AY109357.1| Zea mays CL881_1 mRNA sequence Length = 3158 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 345 accattactatgtaaatctgaagtatgaagatga 378 ||||||||||||| ||| |||||||||||||||| Sbjct: 343 accattactatgtcaatttgaagtatgaagatga 376
>gb|AC156027.2| Mus musculus BAC clone RP23-55O17 from chromosome 17, complete sequence Length = 214723 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 210 ctgaagaagcaaagaagatatca 232 ||||||||||||||||||||||| Sbjct: 190153 ctgaagaagcaaagaagatatca 190131
>ref|XM_483106.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1113 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 114 tgccaccgccaccacctctcccacca 139 |||||||||||||||||| ||||||| Sbjct: 891 tgccaccgccaccacctcccccacca 916
>gb|AC121875.2| Mus musculus BAC clone RP24-125O20 from 17, complete sequence Length = 200763 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 417 ttgataaactgcagcagactta 438 |||||||||||||||||||||| Sbjct: 20232 ttgataaactgcagcagactta 20253
>gb|AC121932.2| Mus musculus BAC clone RP24-205N24 from 17, complete sequence Length = 152782 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 417 ttgataaactgcagcagactta 438 |||||||||||||||||||||| Sbjct: 4288 ttgataaactgcagcagactta 4267
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 114 tgccaccgccaccacctctcccacca 139 |||||||||||||||||| ||||||| Sbjct: 24314063 tgccaccgccaccacctcccccacca 24314088
>dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686H11 Length = 135273 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 114 tgccaccgccaccacctctcccacca 139 |||||||||||||||||| ||||||| Sbjct: 54367 tgccaccgccaccacctcccccacca 54392
>ref|XM_450222.1| Oryza sativa (japonica cultivar-group), mRNA Length = 207 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 350 tactatgtaaatctgaagtatgaagatga 378 ||||| || |||||||||||||||||||| Sbjct: 157 tactacgtcaatctgaagtatgaagatga 185
>gb|AF129756.1|DJ201G24 Homo sapiens MSH55 gene, partial cds; and CLIC1, DDAH, G6b, G6c, G5b, G6d, G6e, G6f, BAT5, G5b, CSK2B, BAT4, G4, Apo M, BAT3, BAT2, AIF-1, 1C7, LST-1, LTB, TNF, and LTA genes, complete cds Length = 184666 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 129151 gccaccgccaccacctctccc 129171
>ref|XM_532218.2| PREDICTED: Canis familiaris synaptosomal-associated protein, 91kDa, transcript variant 1 (SNAP91), mRNA Length = 4165 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctcccacca 139 |||||||||||||||||| |||||| Sbjct: 1654 gccaccgccaccacctctgccacca 1678
>ref|XM_862657.1| PREDICTED: Canis familiaris synaptosomal-associated protein, 91kDa, transcript variant 3 (SNAP91), mRNA Length = 4073 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctcccacca 139 |||||||||||||||||| |||||| Sbjct: 1646 gccaccgccaccacctctgccacca 1670
>ref|XM_845999.1| PREDICTED: Canis familiaris similar to Alpha-fetoprotein enhancer binding protein (AT motif-binding factor) (AT-binding transcription factor 1), transcript variant 2 (LOC489729), mRNA Length = 11346 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctcccacca 139 ||||||||||||||||| ||||||| Sbjct: 6138 gccaccgccaccacctcccccacca 6162
>ref|XM_546849.2| PREDICTED: Canis familiaris similar to Alpha-fetoprotein enhancer binding protein (AT motif-binding factor) (AT-binding transcription factor 1), transcript variant 1 (LOC489729), mRNA Length = 11373 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctcccacca 139 ||||||||||||||||| ||||||| Sbjct: 6165 gccaccgccaccacctcccccacca 6189
>emb|BX511262.7| Human DNA sequence from clone DASS-336N12 on chromosome 6, complete sequence Length = 69009 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 472 gccaccgccaccacctctccc 452
>emb|BX248305.13| Human DNA sequence from clone DASS-82G15 on chromosome 6 Contains the UQCRHP1 pseudogene for ubiquinol-cytochrome c reductase hinge protein pseudogene 1, AIF1 gene for allograft inflammatory factor 1, the 5' end of the BAT2 gene for HLA-B associated transcript 2, and 1 CpG island, complete sequence Length = 16685 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 15157 gccaccgccaccacctctccc 15137
>emb|AL805934.3| Human DNA sequence from clone DAQB-195H10 on chromosome 6 Contains the AIF1 gene for allograft inflammatory factor 1, the BAT2 genes for HLA-B associated transcript 2, the BAT3 gene for HLA-B associated transcript 3, the APOM gene for apolipoprotein M, the C6orf47 gene for chromosome 6 open reading frame 47, the BAT4 gene for HLA-B associated transcript 4, the CSNK2B gene for casein kinase 2, beta polypeptide, the LY6G5B gene for lymphocyte antigen 6 complex, locus G5B, the bQB195H10.12 gene for a novel protein, the LY6G5C gene for lymphocyte antigen 6 complex, locus G5C, the BAT5 gene for HLA-B associated transcript 5, the 5' end for LY6G6D gene for lymphocyte antigen 6 complex, locus G6D and 7 CpG islands, complete sequence Length = 99109 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 9397 gccaccgccaccacctctccc 9377
>emb|AL662801.7| Human DNA sequence from clone XXbac-296P20 on chromosome 6 contains a ribosomal protein L15 (RPL15) pseudogene, the BAT1 gene for HLA-B associated transcript 1, the ATP6V1G gene for ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G, the NFKBIL1 gene for nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1, the LTA gene for lymphotoxin alpha, the TNF gene for tumour necrosis factor, the LTB gene for lymphotoxin beta, the LST1 gene for leukocyte specific transcript 1, the LY117 gene for lymphocyte antigen 117, the AIF1 gene for alograft imflammatory factor 1, the BAT2 gene for HLA-B associated transcript 2, the BAT3 gene for HLA-B associated transcript 3, the APOM gene for apolipoprotein M, the 3' end of the gene for chromosome 6, open reading frame 47 and four CpG islands, complete sequence Length = 132330 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 93592 gccaccgccaccacctctccc 93572
>emb|AL662847.6| Human DNA sequence from clone XXbac-270M2 on chromosome 6 contains the gene for a novel protein similar to similar to peptidyl-prolyl cis-trans isomerase A (PPIase), a ribosomal protein L15 (RPL15) pseudogene, the BAT1 gene for HLA-B associated transcript 1, the ATP6V1G gene for ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G, the NFKBIL1 gene for nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1, the LTA gene for lymphotoxin alpha, the TNF gene for tumour necrosis factor, the LTB gene for lymphotoxin beta, the LST1 gene for leukocyte specific transcript 1, the LY117 gene for lymphocyte antigen 117, the AIF1 gene for alograft imflammatory factor 1, the BAT2 gene for HLA-B associated transcript 2, the 3' end of the BAT3 gene for HLA-B associated transcript 3 and two CpG islands, complete sequence Length = 135784 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 107359 gccaccgccaccacctctccc 107339
>emb|CR759761.9| Human DNA sequence from clone DAMC-157M7 on chromosome 6, complete sequence Length = 83849 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 9389 gccaccgccaccacctctccc 9369
>emb|CR753892.5| Human DNA sequence from clone DADB-70P7 on chromosome 6, complete sequence Length = 101422 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 77804 gccaccgccaccacctctccc 77784
>dbj|AB017437.1| Gallus gallus mRNA for avena, complete cds Length = 2265 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 1231 gccaccgccaccacctctccc 1251
>gb|AC148688.1| Macaca mulatta Major Histocompatibility Complex BAC MMU218K02, complete sequence Length = 182826 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 55968 gccaccgccaccacctctccc 55948
>emb|CR352886.1| Gallus gallus finished cDNA, clone ChEST388i12 Length = 917 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 353 tatgtaaatctgaagtatgaa 373 ||||||||||||||||||||| Sbjct: 394 tatgtaaatctgaagtatgaa 414
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 350 tactatgtaaatctgaagtatgaagatga 378 ||||| || |||||||||||||||||||| Sbjct: 12179403 tactaggttaatctgaagtatgaagatga 12179375
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 350 tactatgtaaatctgaagtatgaagatga 378 ||||| || |||||||||||||||||||| Sbjct: 3225106 tactacgtcaatctgaagtatgaagatga 3225134 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 ccaccgccaccacctctcccacca 139 |||||||||||||||||| ||||| Sbjct: 21837283 ccaccgccaccacctctctcacca 21837306
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 72/89 (80%) Strand = Plus / Minus Query: 359 aatctgaagtatgaagatgacaggcctgttgatggaaaaggtgttggtagaaaagtcatt 418 |||||||||||||| ||||| || || || |||||||| || | |||||||| || | Sbjct: 9635827 aatctgaagtatgaggatgatagaccagtggatggaaagggcataggtagaaaggtgctg 9635768 Query: 419 gataaactgcagcagacttatgcatctga 447 || ||||| |||||||| ||||| ||||| Sbjct: 9635767 gacaaactccagcagacctatgcgtctga 9635739
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 22103 gccaccgccaccacctctccc 22123
>ref|NM_001008974.1| Pan troglodytes deformed epidermal autoregulatory factor 1 (DEAF1), mRNA Length = 2405 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 gccgcggccgccacccctgccgcct 202 ||||||||||||||| ||||||||| Sbjct: 463 gccgcggccgccaccgctgccgcct 439
>ref|NM_204300.1| Gallus gallus enabled homolog (Drosophila) (ENAH), mRNA Length = 3297 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 1707 gccaccgccaccacctctccc 1727
>gb|AF038458.1|AF038458 Homo sapiens chromosome 19, cosmids R31158, R31874, and R28125, complete sequence Length = 92797 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 gcaactttgcatctctgttcc 23 ||||||||||||||||||||| Sbjct: 63924 gcaactttgcatctctgttcc 63944
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 42.1 bits (21), Expect = 1.6 Identities = 72/89 (80%) Strand = Plus / Minus Query: 359 aatctgaagtatgaagatgacaggcctgttgatggaaaaggtgttggtagaaaagtcatt 418 |||||||||||||| ||||| || || || |||||||| || | |||||||| || | Sbjct: 73830 aatctgaagtatgaggatgatagaccagtggatggaaagggcataggtagaaaggtgctg 73771 Query: 419 gataaactgcagcagacttatgcatctga 447 || ||||| |||||||| ||||| ||||| Sbjct: 73770 gacaaactccagcagacctatgcgtctga 73742
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 323103 gccaccgccaccacctctccc 323123
>dbj|AP005892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0011D16 Length = 177329 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 350 tactatgtaaatctgaagtatgaagatga 378 ||||| || |||||||||||||||||||| Sbjct: 101419 tactacgtcaatctgaagtatgaagatga 101447
>dbj|AP005727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0038I09 Length = 153520 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 350 tactatgtaaatctgaagtatgaagatga 378 ||||| || |||||||||||||||||||| Sbjct: 134769 tactacgtcaatctgaagtatgaagatga 134797
>gb|AF049461.1|AF049461 Pan troglodytes nuclear DEAF-1 related transcriptional regulator protein mRNA, complete cds Length = 2405 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 gccgcggccgccacccctgccgcct 202 ||||||||||||||| ||||||||| Sbjct: 463 gccgcggccgccaccgctgccgcct 439
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 350 tactatgtaaatctgaagtatgaagatga 378 ||||| || |||||||||||||||||||| Sbjct: 12133773 tactaggttaatctgaagtatgaagatga 12133745
>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159296 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 350 tactatgtaaatctgaagtatgaagatga 378 ||||| || |||||||||||||||||||| Sbjct: 117914 tactaggttaatctgaagtatgaagatga 117942
>dbj|AB057641.1| Gallus gallus mRNA for avEna neural variant, complete cds Length = 3297 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 1707 gccaccgccaccacctctccc 1727
>dbj|AB035523.1| Gallus gallus mRNA for avenaIII, complete cds Length = 1853 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 765 gccaccgccaccacctctccc 785
>dbj|AB035522.1| Gallus gallus mRNA for avenaII, complete cds Length = 2135 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gccaccgccaccacctctccc 135 ||||||||||||||||||||| Sbjct: 1120 gccaccgccaccacctctccc 1140
>gb|AC154041.1| Drosophila melanogaster clone BACR43N11, complete sequence Length = 157286 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cctgccaccgccaccacctc 131 |||||||||||||||||||| Sbjct: 103211 cctgccaccgccaccacctc 103192
>gb|AC087434.3| Pan troglodytes clone RP43-90F9, complete sequence Length = 161716 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cctgccaccgccaccacctc 131 |||||||||||||||||||| Sbjct: 16035 cctgccaccgccaccacctc 16054
>ref|XM_630658.1| Dictyostelium discoideum hypothetical protein (DDB0188901), partial mRNA Length = 1506 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cattactatgtaaatctgaa 366 |||||||||||||||||||| Sbjct: 1333 cattactatgtaaatctgaa 1314
>ref|NM_015409.3| Homo sapiens E1A binding protein p400 (EP400), mRNA Length = 12265 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tgccgcggccgccacccctg 196 |||||||||||||||||||| Sbjct: 5538 tgccgcggccgccacccctg 5557
>gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0036H01, complete sequence Length = 182504 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 351 actatgtaaatctgaagtatgaagatga 378 ||||||| ||||||||||||| |||||| Sbjct: 150736 actatgtcaatctgaagtatggagatga 150709
>gb|AC148658.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018P20 map near S6115, complete sequence Length = 139249 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 351 actatgtaaatctgaagtatgaagatga 378 ||||||| ||||||||||||| |||||| Sbjct: 77844 actatgtcaatctgaagtatggagatga 77871
>gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone OSJNBb0069G11, complete sequence Length = 174844 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 347 cattactatgtaaatctgaagtatgaagatga 378 ||||||||| | ||||||||||||||| |||| Sbjct: 109509 cattactatattaatctgaagtatgaaaatga 109478
>ref|XM_415846.1| PREDICTED: Gallus gallus similar to nuclear protein p30 (LOC417601), mRNA Length = 2021 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 aagacaacagatgagttctt 342 |||||||||||||||||||| Sbjct: 1771 aagacaacagatgagttctt 1752
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 ccaccgccaccacctctcccacca 139 |||||||||||||||||| ||||| Sbjct: 42717 ccaccgccaccacctctctcacca 42740
>gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, complete sequence Length = 182113 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ttgaagacaacagatgagtt 339 |||||||||||||||||||| Sbjct: 69614 ttgaagacaacagatgagtt 69595
>gb|AC164103.5| Mus musculus BAC clone RP23-427D2 from chromosome 5, complete sequence Length = 188588 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ggcctgttgatggaaaaggt 400 |||||||||||||||||||| Sbjct: 67734 ggcctgttgatggaaaaggt 67715
>gb|AC005057.2| Homo sapiens BAC clone CTB-52H6 from 7, complete sequence Length = 99370 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cctgccaccgccaccacctc 131 |||||||||||||||||||| Sbjct: 98684 cctgccaccgccaccacctc 98665
>gb|AC144796.2| Mus musculus BAC clone RP24-397M4 from chromosome 7, complete sequence Length = 140189 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 gtagaaaagtcattgataaa 424 |||||||||||||||||||| Sbjct: 8507 gtagaaaagtcattgataaa 8488
>gb|AC134438.3| Mus musculus BAC clone RP24-470G3 from chromosome 5, complete sequence Length = 140395 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 ggcctgttgatggaaaaggt 400 |||||||||||||||||||| Sbjct: 14673 ggcctgttgatggaaaaggt 14692
>emb|CR956650.4| Pig DNA sequence from clone CH242-171I16 on chromosome 6, complete sequence Length = 165704 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 tagctcataagactttgcct 469 |||||||||||||||||||| Sbjct: 142841 tagctcataagactttgcct 142860
>gb|AC132619.3| Mus musculus BAC clone RP23-195N4 from chromosome 7, complete sequence Length = 193890 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 gtagaaaagtcattgataaa 424 |||||||||||||||||||| Sbjct: 128843 gtagaaaagtcattgataaa 128824
>emb|CR974452.4| Pig DNA sequence from clone PigE-201A17 on chromosome 6, complete sequence Length = 84444 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 tagctcataagactttgcct 469 |||||||||||||||||||| Sbjct: 51069 tagctcataagactttgcct 51088
>gb|AC091092.3| Papio anubis clone RP41-191D8, complete sequence Length = 167732 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cctgccaccgccaccacctc 131 |||||||||||||||||||| Sbjct: 68465 cctgccaccgccaccacctc 68484
>emb|AL355333.18| Human DNA sequence from clone RP11-575N15 on chromosome 10, complete sequence Length = 180545 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 aagaagcaaagaagatatca 232 |||||||||||||||||||| Sbjct: 150356 aagaagcaaagaagatatca 150337
>emb|AL022476.2|HS323M22 Human DNA sequence from clone RP3-323M22 on chromosome 22, complete sequence Length = 194523 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cctgccaccgccaccacctc 131 |||||||||||||||||||| Sbjct: 50271 cctgccaccgccaccacctc 50290
>dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, complete sequence Length = 219969 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ttgaagacaacagatgagtt 339 |||||||||||||||||||| Sbjct: 18723 ttgaagacaacagatgagtt 18704
>dbj|BS000536.1| Pan troglodytes chromosome Y clone:PTB-100K06, complete sequences Length = 204391 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 ttgaagacaacagatgagtt 339 |||||||||||||||||||| Sbjct: 51279 ttgaagacaacagatgagtt 51298
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 ttgaagacaacagatgagtt 339 |||||||||||||||||||| Sbjct: 20940274 ttgaagacaacagatgagtt 20940293
>gb|AC010575.5| Drosophila melanogaster 3L BAC RP98-5M7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172401 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cctgccaccgccaccacctc 131 |||||||||||||||||||| Sbjct: 32994 cctgccaccgccaccacctc 32975
>gb|AC012014.20| Homo sapiens 3 BAC RP11-255N4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 199523 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 tgaagtatgaagatgacagg 382 |||||||||||||||||||| Sbjct: 139876 tgaagtatgaagatgacagg 139857
>gb|AC105749.2| Homo sapiens chromosome 3 clone RP11-640L9, complete sequence Length = 200450 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tgaagaagcaaagaagatat 230 |||||||||||||||||||| Sbjct: 36900 tgaagaagcaaagaagatat 36881
>ref|NM_139648.1| Drosophila melanogaster CG15022-RA (CG15022), mRNA Length = 1060 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cctgccaccgccaccacctc 131 |||||||||||||||||||| Sbjct: 402 cctgccaccgccaccacctc 421
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome Length = 2694756 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ctgaagaagcaaagaagata 229 |||||||||||||||||||| Sbjct: 480818 ctgaagaagcaaagaagata 480837
>gb|AY095075.1| Drosophila melanogaster RE24507 full insert cDNA Length = 1075 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cctgccaccgccaccacctc 131 |||||||||||||||||||| Sbjct: 402 cctgccaccgccaccacctc 421
>gb|DQ314862.1| Streptomyces hygroscopicus strain NRRL 2388 hygromycin A biosynthetic gene cluster, complete sequence Length = 39151 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ttgagggtgatgacctgcca 118 |||||||||||||||||||| Sbjct: 35825 ttgagggtgatgacctgcca 35844
>gb|AY044869.1| Homo sapiens p400 SWI2/SNF2-related protein mRNA, complete cds Length = 10017 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tgccgcggccgccacccctg 196 |||||||||||||||||||| Sbjct: 5468 tgccgcggccgccacccctg 5487
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 351 actatgtaaatctgaagtatgaagatga 378 ||||||| ||||||||||||| |||||| Sbjct: 12017218 actatgtcaatctgaagtatggagatga 12017245
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 347 cattactatgtaaatctgaagtatgaagatga 378 ||||||||| | ||||||||||||||| |||| Sbjct: 11787944 cattactatattaatctgaagtatgaaaatga 11787975
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 347 cattactatgtaaatctgaagtatgaagatga 378 ||||||||| | ||||||||||||||| |||| Sbjct: 10492693 cattactatattaatctgaagtatgaaaatga 10492662
>gb|AC137590.2| Homo sapiens 12 BAC RP13-820C6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128729 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tgccgcggccgccacccctg 196 |||||||||||||||||||| Sbjct: 63221 tgccgcggccgccacccctg 63202
>gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y, complete sequence Length = 176524 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ttgaagacaacagatgagtt 339 |||||||||||||||||||| Sbjct: 63250 ttgaagacaacagatgagtt 63231
>dbj|AP006343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1032F05 Length = 151412 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 347 cattactatgtaaatctgaagtatgaagatga 378 ||||||||| | ||||||||||||||| |||| Sbjct: 20244 cattactatattaatctgaagtatgaaaatga 20275
>gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15 of 83 of the complete sequence Length = 315988 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cctgccaccgccaccacctc 131 |||||||||||||||||||| Sbjct: 149414 cctgccaccgccaccacctc 149395
>gb|L43967.2| Mycoplasma genitalium G37, complete genome Length = 580076 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 401 gttggtagaaaagtcattgataaa 424 |||||| ||||||||||||||||| Sbjct: 134712 gttggttgaaaagtcattgataaa 134735
>gb|AE000512.1| Thermotoga maritima MSB8, complete genome Length = 1860725 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ttttggcaagaggggaaatc 284 |||||||||||||||||||| Sbjct: 1685394 ttttggcaagaggggaaatc 1685413
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 351 actatgtaaatctgaagtatgaagatga 378 ||||||| ||||||||||||| |||||| Sbjct: 12095141 actatgtcaatctgaagtatggagatga 12095168
>gb|U62293.1|HSU62293 Human LIM-kinase1 and alternatively spliced LIM-kinase1 (LIMK1) gene, complete cds Length = 65608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cctgccaccgccaccacctc 131 |||||||||||||||||||| Sbjct: 10865 cctgccaccgccaccacctc 10884
>dbj|AB056762.1| Macaca fascicularis brain cDNA clone:QccE-21503, full insert sequence Length = 3257 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tgccgcggccgccacccctg 196 |||||||||||||||||||| Sbjct: 787 tgccgcggccgccacccctg 806 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,324,364 Number of Sequences: 3902068 Number of extensions: 4324364 Number of successful extensions: 92439 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91863 Number of HSP's gapped (non-prelim): 575 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
