ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IBP1_MOUSE (P47876) Insulin-like growth factor-binding protein 1... 31 0.78
2HES2_MOUSE (O54792) Transcription factor HES-2 (Hairy and enhanc... 29 3.9
3MMP24_HUMAN (Q9Y5R2) Matrix metalloproteinase-24 precursor (EC 3... 29 3.9
4IBP1_RAT (P21743) Insulin-like growth factor-binding protein 1 p... 28 5.1
5METX_DECAR (Q47JU2) Homoserine O-acetyltransferase (EC 2.3.1.31)... 28 8.6

>IBP1_MOUSE (P47876) Insulin-like growth factor-binding protein 1 precursor|
           (IGFBP-1) (IBP-1) (IGF-binding protein 1)
          Length = 272

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 64  FPGGIVGGEGDPWHSVPCRQSSLVRVSLCCPRP 162
           F  G+V G   PWH  PC   +  R+ LC P P
Sbjct: 18  FQIGVVAGAPQPWHCAPC---TAERLGLCPPVP 47



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>HES2_MOUSE (O54792) Transcription factor HES-2 (Hairy and enhancer of split 2)|
          Length = 157

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 95  SPSPPTMPPGNSRPWARW 42
           +PSPP  PPG+S  W  W
Sbjct: 140 APSPPVPPPGSSGLWRPW 157



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>MMP24_HUMAN (Q9Y5R2) Matrix metalloproteinase-24 precursor (EC 3.4.24.-)|
           (MMP-24) (Membrane-type matrix metalloproteinase 5)
           (MT-MMP 5) (Membrane-type-5 matrix metalloproteinase)
           (MT5-MMP)
          Length = 645

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 116 QGTECHGSPSPPTMPPGNSRPWARW 42
           +G      P PP  PPG +  W+RW
Sbjct: 5   RGGRAAPGPPPPPPPPGQAPRWSRW 29



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>IBP1_RAT (P21743) Insulin-like growth factor-binding protein 1 precursor|
           (IGFBP-1) (IBP-1) (IGF-binding protein 1)
          Length = 272

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 76  IVGGEGDPWHSVPCRQSSLVRVSLCCPRP 162
           +V G   PWH  PC   +  R+ LC P P
Sbjct: 22  VVAGAPQPWHCAPC---TAERLELCPPVP 47



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>METX_DECAR (Q47JU2) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 374

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 104 CHGSPSPPTMPPGNSRPW 51
           CHGS  P ++ P   +PW
Sbjct: 101 CHGSTGPSSLNPATGKPW 118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,305,209
Number of Sequences: 219361
Number of extensions: 515693
Number of successful extensions: 2294
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2293
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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