Clone Information

BLAST Search Result

Clone Name	bastl56d11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IF39_TOBAC (P56821) Eukaryotic translation initiation factor 3 s...	171	8e-43
2	IF39_ARATH (Q9C5Z1) Eukaryotic translation initiation factor 3 s...	161	6e-40
3	IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 s...	65	6e-11
4	IF39_RAT (Q4G061) Eukaryotic translation initiation factor 3 sub...	64	2e-10
5	IF39_MOUSE (Q8JZQ9) Eukaryotic translation initiation factor 3 s...	64	2e-10
6	PRT1_PICAN (P12806) Putative PRT1 protein	45	8e-05
7	IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 9...	41	0.002
8	IF39_SCHPO (Q10425) Probable eukaryotic translation initiation f...	39	0.006
9	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	32	0.71
10	ATX3_CAEEL (O17850) Ataxin-3 homolog (EC 3.4.22.-) (Machado-Jose...	32	0.71
11	MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing prote...	32	0.71
12	ACPH_MYCPN (P75378) Acyl carrier protein homolog (ACP)	31	1.2
13	Y967_STRPN (Q97R63) UPF0054 protein SP0967	31	1.6
14	CARB1_METJA (Q58773) Carbamoyl-phosphate synthase large chain, N...	30	2.1
15	ACPH_MYCGE (P47529) Acyl carrier protein homolog (ACP)	30	2.1
16	Y869_STRR6 (Q8DQ35) UPF0054 protein spr0869	30	2.7
17	HS90A_BRARE (Q90474) Heat shock protein HSP 90-alpha	30	2.7
18	MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing prote...	30	3.5
19	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	29	4.6
20	PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, m...	29	4.6
21	OPR_OCTVU (Q5W9T5) Octopressin receptor	29	4.6
22	TEGU_SHV21 (Q01056) Probable large tegument protein	29	4.6
23	YM67_YEAST (Q03661) Hypothetical 187.1 kDa protein in GUA1-ERG8 ...	29	4.6
24	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	29	6.0
25	BOLL_MOUSE (Q924M5) Protein boule-like	29	6.0
26	ACINU_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in...	29	6.0
27	SYE_ACIAD (Q6F7C8) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta...	29	6.0
28	ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in...	29	6.0
29	ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu...	28	7.9
30	KIF14_HUMAN (Q15058) Kinesin-like protein KIF14	28	7.9
31	ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu...	28	7.9
32	RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U...	28	7.9
33	RNH2_THETN (Q8R9X9) Ribonuclease HII (EC 3.1.26.4) (RNase HII)	28	7.9
34	PYR1_SCHPO (Q09794) Protein ura1 [Includes: Glutamine-dependent ...	28	7.9
35	PYR1_EMENI (O93937) Protein pyrABCN [Includes: Glutamine-depende...	28	7.9
36	CAD89_DROME (Q9VEU1) Cadherin 89D precursor	28	7.9
37	SPT6_YEAST (P23615) Transcription initiation protein SPT6	28	7.9
38	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	28	7.9
39	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	28	7.9
40	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	28	7.9
41	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	28	7.9
42	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	28	7.9

>IF39_TOBAC (P56821) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p110) (eIF3b)
          Length = 719

 Score =  171 bits (433), Expect = 8e-43
 Identities = 86/127 (67%), Positives = 99/127 (77%)
 Frame = +3

Query: 66  MALAISMEAIDARARELGIDLDSVDVDSITLPPGEDFDILSDDEDLLQNEDIPELEMGFS 245
           MA   SM  I A A  +G+DL  +D+DSI LPPGED  I SDD+DL++ ED  E + GF 
Sbjct: 1   MADVTSMGEITAIAARIGVDLSQIDLDSIHLPPGEDCGIPSDDDDLME-EDPLEFDAGFG 59

Query: 246 NIIVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYCFIEYNTP 425
           NI+VVDNLPVVP EK+EKLE VVRKIYSQ+GVIKE GLWMP  PET KT GYCFIEYNTP
Sbjct: 60  NILVVDNLPVVPKEKFEKLEGVVRKIYSQLGVIKEDGLWMPVDPETHKTLGYCFIEYNTP 119

Query: 426 QEAELAR 446
           QEAEL++
Sbjct: 120 QEAELSK 126

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>IF39_ARATH (Q9C5Z1) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p110) (eIF3b) (p82)
          Length = 712

 Score =  161 bits (408), Expect = 6e-40
 Identities = 80/118 (67%), Positives = 94/118 (79%)
 Frame = +3

Query: 93  IDARARELGIDLDSVDVDSITLPPGEDFDILSDDEDLLQNEDIPELEMGFSNIIVVDNLP 272
           IDARA +LGID   V+ DSI LPPGEDF I SDDE + Q +D  E + GF NIIVVD+LP
Sbjct: 6   IDARAAKLGIDWSQVNFDSIQLPPGEDFGIESDDEAVYQ-DDQSEFDTGFGNIIVVDHLP 64

Query: 273 VVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYCFIEYNTPQEAELAR 446
           VVP EK+EKLE VV+KIY+Q+GVIKE GLWMP  P+TK T GYCFIE+NTPQEA+ A+
Sbjct: 65  VVPKEKFEKLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAK 122

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>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1
           homolog) (hPrt1)
          Length = 814

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
 Frame = +3

Query: 126 LDSVDVDSITLPPGEDFDILSDDEDLLQN--EDIPELEMGFSNIIVVDNLPVVPPEKYEK 299
           L++ D D  +    EDF     +E+LL +  +D P+   G  ++IVVDN+P V P++ EK
Sbjct: 143 LENGDADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEK 202

Query: 300 LENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYCFIEYNTPQEA 434
           L+NV+ KI+S+ G I     + P   E  KT GY F+EY +P  A
Sbjct: 203 LKNVIHKIFSKFGKITND--FYP--EEDGKTKGYIFLEYASPAHA 243

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>IF39_RAT (Q4G061) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta)
          Length = 797

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
 Frame = +3

Query: 126 LDSVDVDSITLPPGEDFDILSDDEDLLQN--EDIPELEMGFSNIIVVDNLPVVPPEKYEK 299
           L++ + D  +    EDF     +E+LL +  +D P+   G  ++IVVDN+P V P++ EK
Sbjct: 126 LENGEADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEK 185

Query: 300 LENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYCFIEYNTPQEA 434
           L+NV+ KI+S+ G I     + P   E  KT GY F+EY +P  A
Sbjct: 186 LKNVIHKIFSKFGKIIND--YYP--EEDGKTKGYIFLEYASPAHA 226

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>IF39_MOUSE (Q8JZQ9) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p116)
          Length = 803

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
 Frame = +3

Query: 126 LDSVDVDSITLPPGEDFDILSDDEDLLQN--EDIPELEMGFSNIIVVDNLPVVPPEKYEK 299
           L++ + D  +    EDF     +E+LL +  +D P+   G  ++IVVDN+P V P++ EK
Sbjct: 132 LENGEADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEK 191

Query: 300 LENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYCFIEYNTPQEA 434
           L+NV+ KI+S+ G I     + P   E  KT GY F+EY +P  A
Sbjct: 192 LKNVIHKIFSKFGKIIND--YYP--EEDGKTKGYIFLEYASPAHA 232

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>PRT1_PICAN (P12806) Putative PRT1 protein|
          Length = 220

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 30/110 (27%), Positives = 51/110 (46%)
 Frame = +3

Query: 114 LGIDLDSVDVDSITLPPGEDFDILSDDEDLLQNEDIPELEMGFSNIIVVDNLPVVPPEKY 293
           +  D   VD+ SI            D  DL     +PE E  + + ++ D  P+ P  K 
Sbjct: 5   IAFDESQVDISSI------------DFSDLEAKYHVPEPEHSYEHFVICDGAPIAPEAKA 52

Query: 294 EKLENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYCFIEYNTPQEAELA 443
             L+ V+ K++SQ G + +  ++MP   E  +T G+  IE ++   A+ A
Sbjct: 53  PVLKKVLTKLFSQCGKVVD--MFMPL--ENGQTKGFLIIELDSAAAADKA 98

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>IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 90 kDa subunit|
           (eIF3 p90) (Cell cycle regulation and translation
           initiation protein)
          Length = 763

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 30/106 (28%), Positives = 47/106 (44%)
 Frame = +3

Query: 120 IDLDSVDVDSITLPPGEDFDILSDDEDLLQNEDIPELEMGFSNIIVVDNLPVVPPEKYEK 299
           I L+ + VD I            D  DL +   + E E  F   IVV+  PV+P  K   
Sbjct: 48  IKLEDIPVDDI------------DFSDLEEQYKVTE-EFNFDQYIVVNGAPVIPSAKVPV 94

Query: 300 LENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYCFIEYNTPQEAE 437
           L+  +  ++S+ G  K   +  P    T KT G+ F+E  +  +A+
Sbjct: 95  LKKALTSLFSKAG--KVVNMEFPIDEATGKTKGFLFVECGSMNDAK 138

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>IF39_SCHPO (Q10425) Probable eukaryotic translation initiation factor 3 90 kDa|
           subunit (eIF3 p90)
          Length = 725

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
 Frame = +3

Query: 180 ILSDDEDLLQNEDIPELEM--------GFSNIIVVDNLPVVPPEKYEKLENVVR-KIYSQ 332
           I+  DE++    D+ ELE+        G+  ++V++  PVV   K +     +  K+ ++
Sbjct: 13  IVVKDEEI----DVSELEVKLNVTKPVGYDTVVVIEGAPVVEEAKQQDFFRFLSSKVLAK 68

Query: 333 IGVIKEGGLWMPTHPET--KKTYGYCFIEYNTPQEAEL 440
           IG +KE G +MP   +   K + G  F ++     A+L
Sbjct: 69  IGKVKENGFYMPFEEKNGKKMSLGLVFADFENVDGADL 106

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>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 228 LEMGFSNIIVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYC 404
           + M   N++ V N+P      Y+  E  + +I++Q+G +K   L +     + K YG+C
Sbjct: 1   MSMTAGNVVFVGNIP------YDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFC 53

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>ATX3_CAEEL (O17850) Ataxin-3 homolog (EC 3.4.22.-) (Machado-Joseph|
           disease-like protein)
          Length = 317

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 270 PVVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYCF-IEYNTPQEAELAR 446
           P V P+K +KLE V+ K ++ +G    GG   P   + +K     F +   T   +E++R
Sbjct: 184 PKVTPKKEQKLEKVMTKFFNTVGKRLGGGSGAPPDSQEEKDLAIAFAMSMETKDGSEVSR 243

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>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1|
          Length = 769

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +3

Query: 243 SNIIVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGL---WMPTHPETKKTYGYCFIE 413
           S  ++V NLP      +E  +  VR+++S  G +K   L    +PT    + T G+ F+E
Sbjct: 639 STKVLVKNLP------FEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLE 692

Query: 414 YNTPQEAELA 443
           + T  EA  A
Sbjct: 693 FTTHTEAARA 702

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>ACPH_MYCPN (P75378) Acyl carrier protein homolog (ACP)|
          Length = 84

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 13/37 (35%), Positives = 26/37 (70%)
 Frame = +3

Query: 120 IDLDSVDVDSITLPPGEDFDILSDDEDLLQNEDIPEL 230
           + +DS+D+ S+ +   ++FDI+ +DE L+Q  ++ EL
Sbjct: 35  LKIDSLDMFSVIVSLEKEFDIMFEDEKLMQLNNLAEL 71

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>Y967_STRPN (Q97R63) UPF0054 protein SP0967|
          Length = 165

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 102 RARELGIDLDSVD--VDSITLPPGEDFDILSDDEDLLQNEDIPELEMGFSNII 254
           R+ EL ++  + D   D I+L    + +I  D+EDLL+N ++ E+   F   I
Sbjct: 47  RSHELNLEYRNTDRPTDVISLEYKPELEIAFDEEDLLENSELAEMMSEFDAYI 99

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>CARB1_METJA (Q58773) Carbamoyl-phosphate synthase large chain, N-terminal|
           section (EC 6.3.5.5) (Carbamoyl-phosphate synthetase
           ammonia chain)
          Length = 482

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
 Frame = +3

Query: 87  EAIDARARELGIDL-DSVDVDSITLPPGE-DFDILSDDED----LLQNEDIPELEMGFSN 248
           E ID  ++ L   + + V +D   L   E + +++ D +D    +   E+I  + +    
Sbjct: 184 ELIDITSKGLKYSIINQVLIDESVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHTGE 243

Query: 249 IIVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGG 356
            IVV  +  +P E Y+KL N   KI   +G+  EGG
Sbjct: 244 SIVVSPIQTLPDEFYQKLRNAAIKIIRHLGI--EGG 277

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>ACPH_MYCGE (P47529) Acyl carrier protein homolog (ACP)|
          Length = 84

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +3

Query: 72  LAISMEAIDARARELGIDLDSVDVDSITLPPGEDFDILSDDEDLLQNEDIPELEMGFSNI 251
           L +  + I+   REL ID  S+D+ SI +    +F I  DDE L+  +++ +L +   N+
Sbjct: 21  LNLDEKTINQPLRELKID--SLDMFSIVVSLENEFGISFDDEKLMNLKNLADLVLEVKNL 78

Query: 252 I 254
           +
Sbjct: 79  L 79

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>Y869_STRR6 (Q8DQ35) UPF0054 protein spr0869|
          Length = 165

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 102 RARELGIDLDSVD--VDSITLPPGEDFDILSDDEDLLQNEDIPELEMGFSNII 254
           R+ EL ++    D   D I+L    + +I  D+EDLL+N ++ E+   F   I
Sbjct: 47  RSHELNLEYRDTDRPTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAYI 99

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>HS90A_BRARE (Q90474) Heat shock protein HSP 90-alpha|
          Length = 726

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 114 LGIDLDSVDVDSITLPPGEDFDILSDDEDLLQNEDI 221
           LGID D   V+ I+ P  ED  +L  D+D  + E++
Sbjct: 690 LGIDDDDSVVEEISQPAEEDMPVLEGDDDTSRMEEV 725

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>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1|
          Length = 858

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +3

Query: 228 LEMGFSNIIVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYCF 407
           +  G S  I++ NLP      +E  +  +R ++S  G +K   L       T+   G+ F
Sbjct: 713 ISSGGSTKILIKNLP------FEATKRDIRDLFSSQGQLKSVRLPKKFDNTTR---GFGF 763

Query: 408 IEYNTPQEAELA 443
           +EY+T +EA+ A
Sbjct: 764 VEYSTVREAQSA 775

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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 9/27 (33%), Positives = 21/27 (77%)
 Frame = +3

Query: 363 MPTHPETKKTYGYCFIEYNTPQEAELA 443
           +PTHPET++  G+ +++++  ++A+ A
Sbjct: 298 IPTHPETEQPKGFGYVQFSNMEDAKKA 324

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>PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, mitochondrial|
           precursor (EC 3.6.1.-) (ATP-dependent helicase pif1)
          Length = 805

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +3

Query: 243 SNIIVVDNLPVVPPEKYEKLENVVR------KIYSQIGVIKEGGLW-MPTHPETKKTYGY 401
           + ++++D + +V  E  +KLE V R      K +  I ++  G  + +P  PE  K   +
Sbjct: 411 TRVLIIDEVSMVDAELMDKLEEVARVIRKDSKPFGGIQLVLTGDFFQLPPVPENGKESKF 470

Query: 402 CF 407
           CF
Sbjct: 471 CF 472

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>OPR_OCTVU (Q5W9T5) Octopressin receptor|
          Length = 419

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +1

Query: 238 AFQTLLWWTICRLFPQKSMRSWRTLYARYTVKLV*SKKVGFGCLHTQRPRRPTATASLSI 417
           AF   +W   CR   Q   R+W      Y V+L   K+  FG  H       TA  +L++
Sbjct: 349 AFSGKVW---CRQQSQNFPRTWTQTTNTYLVELEAKKRTSFGAEHVTFASNSTARKTLNV 405

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>TEGU_SHV21 (Q01056) Probable large tegument protein|
          Length = 2469

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +3

Query: 126  LDSVDVDSITLPPGEDFDILSDDEDLLQNEDIPELEMGFSNIIVVDNLPVVPPEKY 293
            +DS  ++++ L   E  DIL  ++ + Q+E I +     SN I+ + L ++  +KY
Sbjct: 865  IDSTTLENVQLQIQEISDILQSNQYIHQSETIKQAFFDKSNTIINNILQLINQQKY 920

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>YM67_YEAST (Q03661) Hypothetical 187.1 kDa protein in GUA1-ERG8 intergenic|
           region
          Length = 1658

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 168 EDFDILSDDE-DLLQNEDIPELEMGFSNIIV--VDNLPVVPPEKYEKLENVVRKIYSQIG 338
           +D D+ SD E D  Q  +  E  + FS  +    DN  +   EKYE  E+ V + YS+ G
Sbjct: 295 DDIDVESDAEKDESQGAEGTEHSVDFSKYMQPRTDNTKIPVIEKYESDEHKVHQRYSEDG 354

Query: 339 VIKEGGLWMPTHPETK 386
               G + +    E++
Sbjct: 355 AFDFGSVNISVDDESE 370

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>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 312 VRKIYSQIGVIKEGGLWMPT---HPETKKTYGYCFIEYNTPQEAELA 443
           + +I+S  G IK   + MP    HP   K  GY ++E+  P+EAE A
Sbjct: 154 ILEIFSTYGKIKM--IDMPVDRYHPHLSK--GYAYVEFEAPEEAEKA 196

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>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 255 VVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYCFIEYNTPQEA 434
           V+ N   V    ++  EN +RK +SQ G +KE  +    +     + GY FI + T ++A
Sbjct: 30  VIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKI---VNDRAGVSKGYGFITFETQEDA 86

Query: 435 E 437
           +
Sbjct: 87  Q 87

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>ACINU_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the nucleus|
            (Acinus)
          Length = 1338

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 195  EDLLQNEDIPELEMG-FSNIIVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPT 371
            +D ++   +P    G  SNI+ + NL  V P    +L    +++  + G + E   W+  
Sbjct: 993  DDPVRTAQVPSPPRGKISNIVHISNL--VRPFTLGQL----KELLGRTGTLVEEAFWID- 1045

Query: 372  HPETKKTYGYCFIEYNTPQEAELAR 446
                 K   +CF+ Y+T +EA   R
Sbjct: 1046 -----KIKSHCFVTYSTVEEAVATR 1065

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>SYE_ACIAD (Q6F7C8) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 502

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 198 DLLQNE-DIPELEMGFSNIIVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPTH 374
           DLL+ E +IP  ++    ++  D LP         L NVV     +I  +  G  W+P+ 
Sbjct: 167 DLLRGEVEIPWAQVDMQVLLKTDGLPTY------HLANVVDDHLMEITHVLRGEEWLPSA 220

Query: 375 PETKKTYGY 401
           P+ +  Y Y
Sbjct: 221 PKHQLLYQY 229

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>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus|
            (Acinus)
          Length = 1341

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 195  EDLLQNEDIPELEMG-FSNIIVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPT 371
            +D ++   +P    G  SNI+ + NL  V P    +L    +++  + G + E   W+  
Sbjct: 994  DDPVRTAQVPSPPRGKISNIVHISNL--VRPFTLGQL----KELLGRTGTLVEEAFWID- 1046

Query: 372  HPETKKTYGYCFIEYNTPQEAELAR 446
                 K   +CF+ Y+T +EA   R
Sbjct: 1047 -----KIKSHCFVTYSTVEEAVATR 1066

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>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
 Frame = +3

Query: 303 ENVVRKIYSQIGVIKEGGLWM-----------PTHPETKKTYGYCFIEYNTPQEAELA 443
           E+ +R ++S +G I+   L             P  P   ++ GY F+ Y  PQ+AE A
Sbjct: 198 EDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQA 255

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>KIF14_HUMAN (Q15058) Kinesin-like protein KIF14|
          Length = 1648

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +3

Query: 180 ILSDDEDLLQNEDIPELEMGFSNIIVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGL 359
           IL ++E ++QN    +  +   N  V   + V P  K EK+E       SQ+ V   G  
Sbjct: 334 ILPEEETVVQNTSAGKDPLKVENSQVTVAVRVRPFTKREKIEKA-----SQV-VFMSGKE 387

Query: 360 WMPTHPETKKTYGYCF 407
               HP+TK+ Y + +
Sbjct: 388 ITVEHPDTKQVYNFIY 403

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>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
 Frame = +3

Query: 303 ENVVRKIYSQIGVIKEGGLWM-----------PTHPETKKTYGYCFIEYNTPQEAELA 443
           E+ +R ++S +G I+   L             P  P   ++ GY F+ Y  PQ+AE A
Sbjct: 162 EDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQA 219

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>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 427

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 291 YEKLENVVRKIYSQIGVIKEGGLWMPTHPETKKTYGYCFIEYNTPQEAELA 443
           YE  E+ +++ +   G IK   + + T   T K  GY FIEY   ++ + A
Sbjct: 147 YESSESKIKREFESYGPIKR--VHLVTDQLTNKPKGYAFIEYMHTRDMKAA 195

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>RNH2_THETN (Q8R9X9) Ribonuclease HII (EC 3.1.26.4) (RNase HII)|
          Length = 241

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
 Frame = +3

Query: 63  KMALAISMEAIDARARELGIDLDSVDVDSITLPPGED--FDILSDDEDLLQNE-DIPELE 233
           K A++  +  +D R      ++D +++ + TL   +   F++    E LL +   IP++ 
Sbjct: 110 KEAISYGIGIVDCR------EIDEINILNATLKAMKKAIFEVKEKIEYLLVDAISIPDMP 163

Query: 234 M-------GFSNIIVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPTHPETKKT 392
           +       G S  I +    ++   + +++     K+Y Q    K  G     H E  K 
Sbjct: 164 IKQLPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKGYGTKEHIEALKK 223

Query: 393 YGYCFIEYNT 422
           YG C I   T
Sbjct: 224 YGPCPIHRRT 233

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>PYR1_SCHPO (Q09794) Protein ura1 [Includes: Glutamine-dependent|
           carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate
           carbamoyltransferase (EC 2.1.3.2)]
          Length = 2244

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 213 EDIPELEMGFSNIIVVDNLPVVPPEKYEKLENVVRKIYSQIGVIKEGGLWMPTHPETKKT 392
           E+   L +   + IVV     +  E Y  L      +   +GV+ E  +    +P TK+ 
Sbjct: 698 ENFDPLGIHTGDSIVVAPSQTLTDEDYNMLRTTAVNVIRHLGVVGECNIQYALNPFTKE- 756

Query: 393 YGYCFIEYN 419
             YC IE N
Sbjct: 757 --YCIIEVN 763

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>PYR1_EMENI (O93937) Protein pyrABCN [Includes: Glutamine-dependent|
           carbamoyl-phosphate (EC 6.3.5.5); Aspartate
           carbamoyltransferase (EC 2.1.3.2)]
          Length = 2275

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = +3

Query: 171 DFDILSDDED----LLQNEDIPELEMGFSNIIVVDNLPVVPPEKYEKLENVVRKIYSQIG 338
           +++++ D  D    +   E+   L +   + IVV     +  E Y  L      +   +G
Sbjct: 686 EYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAVNVIRHLG 745

Query: 339 VIKEGGLWMPTHPETKKTYGYCFIEYN 419
           V+ E  +    +P +K+   YC IE N
Sbjct: 746 VVGECNIQYALNPYSKE---YCIIEVN 769

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>CAD89_DROME (Q9VEU1) Cadherin 89D precursor|
          Length = 2240

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 210 NEDIPELEMGFSNIIVVDNLP 272
           N+++PE E  + NI +V+NLP
Sbjct: 405 NDNVPEFEADYYNISIVENLP 425

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>SPT6_YEAST (P23615) Transcription initiation protein SPT6|
          Length = 1451

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 192  DEDLLQNEDIPELE----MGFSNIIVVDNLPVVPPEKYEKLENVV 314
            D+DL Q+ DI ELE    +    +++VDN      +KY  L+ ++
Sbjct: 1298 DKDLFQHIDIQELEKENPLALGKVLIVDN------QKYNDLDQII 1336

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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 312 VRKIYSQIGVIKEGGLWMPT---HPETKKTYGYCFIEYNTPQEAELA 443
           + +I+S  G IK   + MP    HP   K  GY ++E+  P EAE A
Sbjct: 177 IMEIFSTYGKIKM--IDMPVERMHPHLSK--GYAYVEFENPDEAEKA 219

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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 312 VRKIYSQIGVIKEGGLWMPT---HPETKKTYGYCFIEYNTPQEAELA 443
           + +I+S  G IK   + MP    HP   K  GY ++E+  P EAE A
Sbjct: 177 IMEIFSTYGKIKM--IDMPVERMHPHLSK--GYAYVEFENPDEAEKA 219

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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 312 VRKIYSQIGVIKEGGLWMPT---HPETKKTYGYCFIEYNTPQEAELA 443
           + +I+S  G IK   + MP    HP   K  GY ++E+  P EAE A
Sbjct: 177 IMEIFSTYGKIKM--IDMPVERMHPHLSK--GYAYVEFENPDEAEKA 219

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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 312 VRKIYSQIGVIKEGGLWMPT---HPETKKTYGYCFIEYNTPQEAELA 443
           + +I+S  G IK   + MP    HP   K  GY ++E+  P EAE A
Sbjct: 177 IMEIFSTYGKIKM--IDMPVERMHPHLSK--GYAYVEFENPDEAEKA 219

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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 312 VRKIYSQIGVIKEGGLWMPT---HPETKKTYGYCFIEYNTPQEAELA 443
           + +I+S  G IK   + MP    HP   K  GY ++E+  P EAE A
Sbjct: 177 IMEIFSTYGKIKM--IDMPVERMHPHLSK--GYAYVEFENPDEAEKA 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,466,886
Number of Sequences: 219361
Number of extensions: 1026439
Number of successful extensions: 3865
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3859
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result