ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OC17_CHICK (Q9PRS8) Ovocleidin-17 (OC-17) 30 3.1
2FDHA_DESGI (Q934F5) Formate dehydrogenase alpha subunit precurso... 28 8.9

>OC17_CHICK (Q9PRS8) Ovocleidin-17 (OC-17)|
          Length = 142

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -1

Query: 230 GERGREWSSWLVSRAPLWLAGERARADGRCCRLSDSE*PYGW 105
           G R   WS     R   W    +AR  GRC  L D E    W
Sbjct: 84  GSRSWRWSDGTAPRFASWHRTAKARRGGRCAALRDEEAFTSW 125



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>FDHA_DESGI (Q934F5) Formate dehydrogenase alpha subunit precursor (EC 1.2.1.2)|
            (FDH alpha subunit) (Formate dehydrogenase large subunit)
          Length = 1012

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = -1

Query: 278  VALLRLVGSGVKRALMGERGREWSSWLVSR--APLWLAGERARADGRCCRLSDSE*PYGW 105
            +A LR + +G K  L   RG+ W+  ++++   P  + G++    G           YGW
Sbjct: 923  LATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQVHMVGIPWH-------YGW 975

Query: 104  ----GGGVAGLASTPSMXXXXLGVP 42
                 GG A    TPS+     G+P
Sbjct: 976  SFPKNGGDAANILTPSVGDPNTGIP 1000


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,683,477
Number of Sequences: 219361
Number of extensions: 685481
Number of successful extensions: 1449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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