ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YM00_YEAST (Q04458) Hypothetical aldehyde dehydrogenase-like pro... 30 3.8
2DPOD_CAEEL (P90829) DNA polymerase delta catalytic subunit (EC 2... 28 8.4

>YM00_YEAST (Q04458) Hypothetical aldehyde dehydrogenase-like protein in|
           ILV2-ADE17 intergenic region (EC 1.2.1.-)
          Length = 532

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 235 VINEELPSVSEASEMQHEEHALVNLMASAKLHGFNGQAQLPMQLPSHMSVASLPLLPPQL 414
           V+NE  PS  E ++     H      A A ++  NG   +P ++  +     L L+PP +
Sbjct: 296 VLNEFYPSFDEQTDFTRMIHEPAYKKAVASINSTNGSKIVPSKISINSDTEDLCLVPPTI 355



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>DPOD_CAEEL (P90829) DNA polymerase delta catalytic subunit (EC 2.7.7.7)|
          Length = 1081

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 289 EHALVNLMASAKLHGFNGQAQLP 357
           + A+ N++A+AK  G +GQAQLP
Sbjct: 126 QSAICNMVAAAKRRGGSGQAQLP 148


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,439,394
Number of Sequences: 219361
Number of extensions: 929384
Number of successful extensions: 2056
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2055
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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