Clone Name | bastl56d06 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 266 bits (134), Expect = 6e-68 Identities = 302/358 (84%) Strand = Plus / Minus Query: 2 ttgaaggatattctcgtggaaggcgaactagagtggtagaaatggagaagcctgtgaaca 61 |||||||||||||||||||||| || ||| ||||||| |||||||| || || |||| Sbjct: 5753234 ttgaaggatattctcgtggaagacggactggagtggttgaaatggacaaatctttgaagg 5753175 Query: 62 atgattacaataacagaaggaataacttagttccagaagtgcctagcaaccacagcacta 121 ||||||||||| |||||| || ||||| | ||||||||| |||||| ||||| ||||| Sbjct: 5753174 ttgattacaatagcagaagaaacaacttggctccagaagtttctagcagccacatcacta 5753115 Query: 122 aatcttcacaggatgagtcaatgtcttccatgaacagttcatctcaccctagtgcaaaag 181 | |||||||||||||||||| ||||||| |||||||||||||||||| ||||| |||| Sbjct: 5753114 agtcttcacaggatgagtcagtgtcttcgatgaacagttcatctcactatagtgggaaag 5753055 Query: 182 cagcttctgaatcaaatagtgtttccagcagctatcatgaagacaatggttttgtaatta 241 |||||||||| ||||| ||||| || |||||||| | ||||| |||||||| |||| | Sbjct: 5753054 cagcttctgactcaaacagtgtgtcaagcagctaccgcgaagataatggtttcataatga 5752995 Query: 242 acgaagaacttccttctgtatctgaggcatcagagatgcagcatgaggaacatgctctag 301 |||||||||||||||||||||||||||||||||| | ||||| ||||| || | |||| Sbjct: 5752994 acgaagaacttccttctgtatctgaggcatcagataaacagcaagaggagcaagtcctag 5752935 Query: 302 ttaatctaatggcatcagcaaagttgcatggtttcaatggacaggctcaattgccaat 359 ||||| ||||| ||||||| || ||||||| ||||| || || | |||||||||||| Sbjct: 5752934 ttaatttaatgtcatcagctaaattgcatgacttcaacgggcaagttcaattgccaat 5752877
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 266 bits (134), Expect = 6e-68 Identities = 302/358 (84%) Strand = Plus / Plus Query: 2 ttgaaggatattctcgtggaaggcgaactagagtggtagaaatggagaagcctgtgaaca 61 |||||||||||||||||||||| || ||| ||||||| |||||||| || || |||| Sbjct: 77937 ttgaaggatattctcgtggaagacggactggagtggttgaaatggacaaatctttgaagg 77996 Query: 62 atgattacaataacagaaggaataacttagttccagaagtgcctagcaaccacagcacta 121 ||||||||||| |||||| || ||||| | ||||||||| |||||| ||||| ||||| Sbjct: 77997 ttgattacaatagcagaagaaacaacttggctccagaagtttctagcagccacatcacta 78056 Query: 122 aatcttcacaggatgagtcaatgtcttccatgaacagttcatctcaccctagtgcaaaag 181 | |||||||||||||||||| ||||||| |||||||||||||||||| ||||| |||| Sbjct: 78057 agtcttcacaggatgagtcagtgtcttcgatgaacagttcatctcactatagtgggaaag 78116 Query: 182 cagcttctgaatcaaatagtgtttccagcagctatcatgaagacaatggttttgtaatta 241 |||||||||| ||||| ||||| || |||||||| | ||||| |||||||| |||| | Sbjct: 78117 cagcttctgactcaaacagtgtgtcaagcagctaccgcgaagataatggtttcataatga 78176 Query: 242 acgaagaacttccttctgtatctgaggcatcagagatgcagcatgaggaacatgctctag 301 |||||||||||||||||||||||||||||||||| | ||||| ||||| || | |||| Sbjct: 78177 acgaagaacttccttctgtatctgaggcatcagataaacagcaagaggagcaagtcctag 78236 Query: 302 ttaatctaatggcatcagcaaagttgcatggtttcaatggacaggctcaattgccaat 359 ||||| ||||| ||||||| || ||||||| ||||| || || | |||||||||||| Sbjct: 78237 ttaatttaatgtcatcagctaaattgcatgacttcaacgggcaagttcaattgccaat 78294
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 266 bits (134), Expect = 6e-68 Identities = 302/358 (84%) Strand = Plus / Minus Query: 2 ttgaaggatattctcgtggaaggcgaactagagtggtagaaatggagaagcctgtgaaca 61 |||||||||||||||||||||| || ||| ||||||| |||||||| || || |||| Sbjct: 5752447 ttgaaggatattctcgtggaagacggactggagtggttgaaatggacaaatctttgaagg 5752388 Query: 62 atgattacaataacagaaggaataacttagttccagaagtgcctagcaaccacagcacta 121 ||||||||||| |||||| || ||||| | ||||||||| |||||| ||||| ||||| Sbjct: 5752387 ttgattacaatagcagaagaaacaacttggctccagaagtttctagcagccacatcacta 5752328 Query: 122 aatcttcacaggatgagtcaatgtcttccatgaacagttcatctcaccctagtgcaaaag 181 | |||||||||||||||||| ||||||| |||||||||||||||||| ||||| |||| Sbjct: 5752327 agtcttcacaggatgagtcagtgtcttcgatgaacagttcatctcactatagtgggaaag 5752268 Query: 182 cagcttctgaatcaaatagtgtttccagcagctatcatgaagacaatggttttgtaatta 241 |||||||||| ||||| ||||| || |||||||| | ||||| |||||||| |||| | Sbjct: 5752267 cagcttctgactcaaacagtgtgtcaagcagctaccgcgaagataatggtttcataatga 5752208 Query: 242 acgaagaacttccttctgtatctgaggcatcagagatgcagcatgaggaacatgctctag 301 |||||||||||||||||||||||||||||||||| | ||||| ||||| || | |||| Sbjct: 5752207 acgaagaacttccttctgtatctgaggcatcagataaacagcaagaggagcaagtcctag 5752148 Query: 302 ttaatctaatggcatcagcaaagttgcatggtttcaatggacaggctcaattgccaat 359 ||||| ||||| ||||||| || ||||||| ||||| || || | |||||||||||| Sbjct: 5752147 ttaatttaatgtcatcagctaaattgcatgacttcaacgggcaagttcaattgccaat 5752090
>emb|BX248578.6| Mouse DNA sequence from clone RP23-227K23 on chromosome 11 Contains a pseudogene similar to part of eukaryotic translation initiation factor 3, subunit 5 (epsilon) Eif3s5, complete sequence Length = 160629 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 ttcatctcaccctagtgcaaaa 180 |||||||||||||||||||||| Sbjct: 6977 ttcatctcaccctagtgcaaaa 6998
>emb|AL663066.12| Mouse DNA sequence from clone RP23-416K12 on chromosome 11 Contains the 5' end of a novel genes, an H+ transporting ATPase V1 subunit G isoform 1 (Atp6v1g1) pseudogene, an upstream transcription factor 1 (Usf1) pseudogene, the 5' end of the Ssh2 gene for slingshot homolog 2 (Drosophila) and a CpG island, complete sequence Length = 160589 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 155 acagttcatctcaccctagtgcaaa 179 |||||||||||||||||||| |||| Sbjct: 18910 acagttcatctcaccctagtccaaa 18886
>emb|AL671860.6| Mouse DNA sequence from clone RP23-252K7 on chromosome X, complete sequence Length = 185369 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 ctgaatcaaatagtgtttcca 208 ||||||||||||||||||||| Sbjct: 112215 ctgaatcaaatagtgtttcca 112235
>emb|CR388144.17| Zebrafish DNA sequence from clone DKEY-21I17 in linkage group 14, complete sequence Length = 211706 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 cacagcttttcctcaaaacct 427 ||||||||||||||||||||| Sbjct: 74397 cacagcttttcctcaaaacct 74417
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome Length = 1796226 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tcttccatgaacagttcatc 164 |||||||||||||||||||| Sbjct: 720668 tcttccatgaacagttcatc 720649
>gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 251631 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaatggagaagcctgtgaac 60 |||||||||||||||||||| Sbjct: 128045 aaatggagaagcctgtgaac 128064
>gb|AF111103.1|MMHC322F16 Mouse major histocompatibility complex region containing the Q region of class I Length = 159179 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 agaaatggagaagcctgtga 58 |||||||||||||||||||| Sbjct: 21140 agaaatggagaagcctgtga 21121
>gb|AC146507.2| Homo sapiens chromosome 5 clone CTD-2301A4, complete sequence Length = 144503 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 caaaagcagcttctgaatca 195 |||||||||||||||||||| Sbjct: 113329 caaaagcagcttctgaatca 113310
>gb|AC143357.1| Pan troglodytes BAC clone RP43-171L24 from 7, complete sequence Length = 181482 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 atctaatggcatcagcaaagttgc 328 |||||||||| ||||||||||||| Sbjct: 127181 atctaatggcttcagcaaagttgc 127204
>gb|AC006029.2| Homo sapiens BAC clone GS1-195F7 from 7q31.2-q32, complete sequence Length = 143851 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 atctaatggcatcagcaaagttgc 328 |||||||||| ||||||||||||| Sbjct: 50889 atctaatggcttcagcaaagttgc 50912
>emb|AL365217.10| Human DNA sequence from clone RP11-74E24 on chromosome 6 Contains a KIAA0663 pseudogene and part of the gene for a novel EGF-like domain containing protein, complete sequence Length = 104957 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tcatctcaccctagtgcaaa 179 |||||||||||||||||||| Sbjct: 80203 tcatctcaccctagtgcaaa 80184
>emb|AL161655.8| Human DNA sequence from clone RP11-116E13 on chromosome 20 Contains part of a novel gene, GSSs and STSs, complete sequence Length = 105191 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 tttcctcaaaaccttttgcc 433 |||||||||||||||||||| Sbjct: 41097 tttcctcaaaaccttttgcc 41116
>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7 Length = 347365 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gacaggctcaattgccaatg 360 |||||||||||||||||||| Sbjct: 343102 gacaggctcaattgccaatg 343121
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ttccttctgtatctgaggca 270 |||||||||||||||||||| Sbjct: 178091 ttccttctgtatctgaggca 178072
>gb|AC112170.2| Homo sapiens chromosome 5 clone CTD-2018G4, complete sequence Length = 76631 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 caaaagcagcttctgaatca 195 |||||||||||||||||||| Sbjct: 33685 caaaagcagcttctgaatca 33704
>gb|AC110005.2| Homo sapiens chromosome 5 clone RP11-265K23, complete sequence Length = 184157 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 caaaagcagcttctgaatca 195 |||||||||||||||||||| Sbjct: 27915 caaaagcagcttctgaatca 27934
>gb|AC160088.2| Mus musculus BAC clone RP23-134J11 from chromosome 19, complete sequence Length = 221101 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 ggcatcagagatgcagcatg 286 |||||||||||||||||||| Sbjct: 117076 ggcatcagagatgcagcatg 117095
>dbj|AK046827.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830016I19 product:unclassifiable, full insert sequence Length = 3927 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ttccagcagctatcatgaag 223 |||||||||||||||||||| Sbjct: 2788 ttccagcagctatcatgaag 2769
>gb|AF111102.2|MMHC214O16 Mus musculus strain 129/SvJ chromosome 17 clone BAC 214O16, complete sequence Length = 158443 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 agaaatggagaagcctgtga 58 |||||||||||||||||||| Sbjct: 150815 agaaatggagaagcctgtga 150796 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 agaaatggagaagcctgtga 58 |||||||||||||||||||| Sbjct: 120706 agaaatggagaagcctgtga 120687 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 agaaatggagaagcctgtga 58 |||||||||||||||||||| Sbjct: 78814 agaaatggagaagcctgtga 78795
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 ttactgcctccacagctttt 416 |||||||||||||||||||| Sbjct: 390208 ttactgcctccacagctttt 390227
>gb|AC140179.3| Homo sapiens chromosome 5 clone RP11-933K12, complete sequence Length = 215808 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 caaaagcagcttctgaatca 195 |||||||||||||||||||| Sbjct: 5916 caaaagcagcttctgaatca 5897
>gb|AC087216.1|AC087216 Mus musculus strain 129svj chromosome 17 clone GS1-11M9, complete sequence Length = 226594 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 agaaatggagaagcctgtga 58 |||||||||||||||||||| Sbjct: 66395 agaaatggagaagcctgtga 66376 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 agaaatggagaagcctgtga 58 |||||||||||||||||||| Sbjct: 21199 agaaatggagaagcctgtga 21180
>emb|AL590502.12| Human DNA sequence from clone RP11-144G16 on chromosome 10, complete sequence Length = 175583 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 ttttcctcaaaaccttttgc 432 |||||||||||||||||||| Sbjct: 172455 ttttcctcaaaaccttttgc 172436
>emb|BX649319.8| Zebrafish DNA sequence from clone DKEYP-88E3 in linkage group 20, complete sequence Length = 108164 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 tccacagcttttcctcaaaa 424 |||||||||||||||||||| Sbjct: 11679 tccacagcttttcctcaaaa 11660
>emb|AL732521.18| Mouse DNA sequence from clone RP23-134A17 on chromosome 4, complete sequence Length = 207223 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 ttccagcagctatcatgaag 223 |||||||||||||||||||| Sbjct: 158503 ttccagcagctatcatgaag 158522
>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23, complete sequence Length = 115972 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 ttactgcctccacagctttt 416 |||||||||||||||||||| Sbjct: 74867 ttactgcctccacagctttt 74886
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 ttactgcctccacagctttt 416 |||||||||||||||||||| Sbjct: 28960 ttactgcctccacagctttt 28979
>gb|AC173486.2| Mus musculus BAC clone RP23-18O16 from chromosome 16, complete sequence Length = 208322 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 gtggtagaaatggagaagcctgtg 57 ||||||||||||||| |||||||| Sbjct: 87887 gtggtagaaatggagcagcctgtg 87864
>emb|CR974473.23| Mouse DNA sequence from clone RP23-38P5 on chromosome 17, complete sequence Length = 219471 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 agaaatggagaagcctgtga 58 |||||||||||||||||||| Sbjct: 20454 agaaatggagaagcctgtga 20435
>emb|CR974466.14| Mouse DNA sequence from clone RP23-331E12 on chromosome 17, complete sequence Length = 210806 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 agaaatggagaagcctgtga 58 |||||||||||||||||||| Sbjct: 201255 agaaatggagaagcctgtga 201236 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 agaaatggagaagcctgtga 58 |||||||||||||||||||| Sbjct: 156055 agaaatggagaagcctgtga 156036
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 gattacaataacagaaggaataac 87 |||||||| ||||||||||||||| Sbjct: 1258500 gattacaaaaacagaaggaataac 1258523
>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome Length = 1796846 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tcttccatgaacagttcatc 164 |||||||||||||||||||| Sbjct: 722402 tcttccatgaacagttcatc 722383
>gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosome 16, complete sequence Length = 198238 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 gtggtagaaatggagaagcctgtg 57 ||||||||||||||| |||||||| Sbjct: 65745 gtggtagaaatggagcagcctgtg 65768
>emb|AL732625.8| Mouse DNA sequence from clone RP23-169H17 on chromosome 2, complete sequence Length = 224038 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ctgaggcatcagagatgcag 282 |||||||||||||||||||| Sbjct: 122631 ctgaggcatcagagatgcag 122650 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,349,522 Number of Sequences: 3902068 Number of extensions: 4349522 Number of successful extensions: 83403 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83200 Number of HSP's gapped (non-prelim): 200 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)