ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IRF1_HUMAN (P10914) Interferon regulatory factor 1 (IRF-1) 28 6.5

>IRF1_HUMAN (P10914) Interferon regulatory factor 1 (IRF-1)|
          Length = 325

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 42  FMMDYKYSDMIDSAEVPIADNRTLPDWAEPLEPV 143
           +M D +    +  A  P A + TLPDW  P+E V
Sbjct: 169 YMQDLEVEQALTPALSPCAVSSTLPDWHIPVEVV 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,979,942
Number of Sequences: 219361
Number of extensions: 453120
Number of successful extensions: 1171
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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