ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56d02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 49 ttcgagagaggaatagagagatc 71 ||||||||||||||||||||||| Sbjct: 43215365 ttcgagagaggaatagagagatc 43215343
>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0020E09 Length = 149195 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 49 ttcgagagaggaatagagagatc 71 ||||||||||||||||||||||| Sbjct: 102820 ttcgagagaggaatagagagatc 102798
>ref|NM_194724.1| Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNAb0072F04.15), mRNA Length = 2991 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Plus Query: 307 agggagctgacctatgacatcgaggatgtcatcgacaagttcatccacca 356 |||||||| |||||||||||||||| ||| ||||||||||| ||||| Sbjct: 214 agggagcttgcctatgacatcgaggactgcatagacaagttcatgcacca 263
>gb|AC113469.9| Mus musculus chromosome 8, clone RP23-261B5, complete sequence Length = 198937 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 57 aggaatagagagatccttgaac 78 |||||||||||||||||||||| Sbjct: 156457 aggaatagagagatccttgaac 156436
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Plus Query: 307 agggagctgacctatgacatcgaggatgtcatcgacaagttcatccacca 356 |||||||| |||||||||||||||| ||| ||||||||||| ||||| Sbjct: 1877006 agggagcttgcctatgacatcgaggactgcatagacaagttcatgcacca 1877055
>gb|AC122147.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0072F04, complete sequence Length = 137724 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Plus Query: 307 agggagctgacctatgacatcgaggatgtcatcgacaagttcatccacca 356 |||||||| |||||||||||||||| ||| ||||||||||| ||||| Sbjct: 95459 agggagcttgcctatgacatcgaggactgcatagacaagttcatgcacca 95508
>gb|AC092553.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0072F04, complete sequence Length = 133121 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Plus Query: 307 agggagctgacctatgacatcgaggatgtcatcgacaagttcatccacca 356 |||||||| |||||||||||||||| ||| ||||||||||| ||||| Sbjct: 128580 agggagcttgcctatgacatcgaggactgcatagacaagttcatgcacca 128629
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Plus Query: 307 agggagctgacctatgacatcgaggatgtcatcgacaagttcatccacca 356 |||||||| |||||||||||||||| ||| ||||||||||| ||||| Sbjct: 1877006 agggagcttgcctatgacatcgaggactgcatagacaagttcatgcacca 1877055 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 aagcagagatgggttcgagagagg 59 ||||||||| |||||||||||||| Sbjct: 5025071 aagcagagaagggttcgagagagg 5025094
>ref|NM_208342.1| Eremothecium gossypii ABR043Wp (ABR043W), mRNA Length = 2061 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 217 tccgagctgactggtatgcatgcagc 242 ||||||||||||||||||||| |||| Sbjct: 478 tccgagctgactggtatgcatacagc 503
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Plus Query: 307 agggagctgacctatgacatcgaggatgtcatcgacaagttcatccacca 356 |||||||| |||||||||||||||| ||| ||||||||||| ||||| Sbjct: 1876957 agggagcttgcctatgacatcgaggactgcatagacaagttcatgcacca 1877006 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 aagcagagatgggttcgagagagg 59 ||||||||| |||||||||||||| Sbjct: 5025858 aagcagagaagggttcgagagagg 5025881
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 217 tccgagctgactggtatgcatgcagc 242 ||||||||||||||||||||| |||| Sbjct: 474775 tccgagctgactggtatgcatacagc 474800
>gb|AC121327.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0016O23, complete sequence Length = 149400 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 307 agggagctgacctatgacatcgaggatgtcatcgacaagttcatccaccagct 359 |||||| || |||| |||||||||||| |||||||| || |||| ||||||| Sbjct: 2863 agggagatggcctacgacatcgaggattgcatcgacaggtacatctaccagct 2915
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 gcgtccgccgcgagatccggt 208 ||||||||||||||||||||| Sbjct: 4249078 gcgtccgccgcgagatccggt 4249058
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 307 agggagctgacctatgacatcgaggatgtcatcgacaagttcatccaccagct 359 |||||| || |||| |||||||||||| |||||||| || |||| ||||||| Sbjct: 23814048 agggagatggcctacgacatcgaggattgcatcgacaggtacatctaccagct 23814100 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ggaatagagagatccttgaa 77 |||||||||||||||||||| Sbjct: 20595293 ggaatagagagatccttgaa 20595312
>emb|CR391915.9| Zebrafish DNA sequence from clone CH211-130O18 in linkage group 19, complete sequence Length = 77634 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 440 gccgtggaatcgcccagccaatcac 464 |||||||||| |||||||||||||| Sbjct: 28356 gccgtggaatggcccagccaatcac 28332
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 307 agggagctgacctatgacatcgaggatgtcatcgacaagttcatccaccagct 359 |||||| || |||| |||||||||||| |||||||| || |||| ||||||| Sbjct: 24125717 agggagatggcctacgacatcgaggattgcatcgacaggtacatctaccagct 24125769 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ggaatagagagatccttgaa 77 |||||||||||||||||||| Sbjct: 20905528 ggaatagagagatccttgaa 20905547
>ref|XM_480601.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2808 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 305 tcagggagctgacctatgacatcgagga 332 |||| ||| ||||||||||||||||||| Sbjct: 230 tcagagagatgacctatgacatcgagga 257
>ref|XM_480600.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3143 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 305 tcagggagctgacctatgacatcgagga 332 |||| ||| ||||||||||||||||||| Sbjct: 458 tcagagagatgacctatgacatcgagga 485
>ref|XM_359511.1| Magnaporthe grisea 70-15 hypothetical protein (MG05266.4) partial mRNA Length = 1416 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 330 ggatgtcatcgacaagttcatccaccag 357 ||||||||||||| |||||||| ||||| Sbjct: 309 ggatgtcatcgacgagttcatctaccag 336
>gb|AC136149.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0060B06, complete sequence Length = 162568 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ggaatagagagatccttgaa 77 |||||||||||||||||||| Sbjct: 138087 ggaatagagagatccttgaa 138106
>ref|XM_776757.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC576450 (LOC576450), mRNA Length = 907 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 tcgacaagttcatccaccagctcg 361 |||||||||||||| ||||||||| Sbjct: 644 tcgacaagttcatcgaccagctcg 667
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 317 cctatgacatcgaggatgtcatcgacaagttc 348 |||| ||||| ||||||||| ||||||||||| Sbjct: 190275 cctacgacatggaggatgtcgtcgacaagttc 190244 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 acatcgaggatgtcatcgacaagt 346 |||| ||||||||||||||||||| Sbjct: 121453 acatggaggatgtcatcgacaagt 121476 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 acatcgaggatgtcatcgacaagt 346 |||| ||||||||||||||||||| Sbjct: 81740 acatggaggatgtcatcgacaagt 81763
>gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0047G15, from chromosome 10, complete sequence Length = 166474 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 aagcagagatgggttcgagagagg 59 ||||||||| |||||||||||||| Sbjct: 30372 aagcagagaagggttcgagagagg 30395
>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0077M24, complete sequence Length = 128920 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ggaatagagagatccttgaa 77 |||||||||||||||||||| Sbjct: 30301 ggaatagagagatccttgaa 30320
>gb|AC090054.2|AC090054 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence Length = 139050 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 ctcaccggtttgctcgccggtgag 171 ||||||||||||||| |||||||| Sbjct: 5159 ctcaccggtttgctccccggtgag 5182
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 ctcaccggtttgctcgccggtgag 171 ||||||||||||||| |||||||| Sbjct: 5894228 ctcaccggtttgctccccggtgag 5894251
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 305 tcagggagctgacctatgacatcgagga 332 |||| ||| ||||||||||||||||||| Sbjct: 6131943 tcagagagatgacctatgacatcgagga 6131970 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 305 tcagggagctgacctatgacatcgagga 332 |||| ||| ||||||||||||||||||| Sbjct: 6121678 tcagagagatgacctatgacatcgagga 6121705
>gb|AC154541.2| Mus musculus BAC clone RP23-458N20 from chromosome 13, complete sequence Length = 174991 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gagagaggaatagagagatc 71 |||||||||||||||||||| Sbjct: 77567 gagagaggaatagagagatc 77548
>dbj|AP006528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0651G05 Length = 153258 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 ctcaccggtttgctcgccggtgag 171 ||||||||||||||| |||||||| Sbjct: 85715 ctcaccggtttgctccccggtgag 85738
>emb|AJ302299.1|HVU302299 Hordeum vulgare genomic sequence, clone BAC 711N16, isolate Mla-RGH1f Length = 2853 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 acatcgaggatgtcatcgacaagt 346 |||| ||||||||||||||||||| Sbjct: 224 acatggaggatgtcatcgacaagt 247
>emb|AJ302298.1|HVU302298 Hordeum vulgare genomic sequence, clone BAC 80H14, isolate Mla-RGH1e Length = 2853 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 acatcgaggatgtcatcgacaagt 346 |||| ||||||||||||||||||| Sbjct: 224 acatggaggatgtcatcgacaagt 247
>emb|AJ302296.1|HVU302296 Hordeum vulgare genomic sequence, clone BAC 80H14, isolate Mla-RGH1bcd Length = 2833 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 317 cctatgacatcgaggatgtcatcgacaagttc 348 |||| ||||| ||||||||| ||||||||||| Sbjct: 218 cctacgacatggaggatgtcgtcgacaagttc 249
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cggccaccagcacggtcgct 388 |||||||||||||||||||| Sbjct: 3060909 cggccaccagcacggtcgct 3060928
>dbj|AP006727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0645D04 Length = 142890 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 ctcaccggtttgctcgccggtgag 171 ||||||||||||||| |||||||| Sbjct: 5159 ctcaccggtttgctccccggtgag 5182
>dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12 Length = 87434 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gaacaagaacaaatagagat 94 |||||||||||||||||||| Sbjct: 55549 gaacaagaacaaatagagat 55568
>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0486F07 Length = 154926 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 305 tcagggagctgacctatgacatcgagga 332 |||| ||| ||||||||||||||||||| Sbjct: 87960 tcagagagatgacctatgacatcgagga 87987 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 305 tcagggagctgacctatgacatcgagga 332 |||| ||| ||||||||||||||||||| Sbjct: 77695 tcagagagatgacctatgacatcgagga 77722
>dbj|AK119306.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-F09, full insert sequence Length = 3143 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 305 tcagggagctgacctatgacatcgagga 332 |||| ||| ||||||||||||||||||| Sbjct: 458 tcagagagatgacctatgacatcgagga 485
>dbj|AK102991.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116D16, full insert sequence Length = 2595 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ggaatagagagatccttgaa 77 |||||||||||||||||||| Sbjct: 1562 ggaatagagagatccttgaa 1581
>dbj|AK101875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070H03, full insert sequence Length = 3673 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ggaatagagagatccttgaa 77 |||||||||||||||||||| Sbjct: 2639 ggaatagagagatccttgaa 2658
>dbj|AK070564.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055J17, full insert sequence Length = 3748 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ggaatagagagatccttgaa 77 |||||||||||||||||||| Sbjct: 2714 ggaatagagagatccttgaa 2733
>dbj|AK060194.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-E12, full insert sequence Length = 1119 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ggaatagagagatccttgaa 77 |||||||||||||||||||| Sbjct: 80 ggaatagagagatccttgaa 99
>gb|AY849624.1| Magnaporthe grisea eukaryotic translation initiation factor 3 subunit 6 interacting protein-like protein mRNA, complete cds Length = 1927 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 330 ggatgtcatcgacaagttcatccaccag 357 ||||||||||||| |||||||| ||||| Sbjct: 422 ggatgtcatcgacgagttcatctaccag 449
>dbj|AB109200.1| Oryza sativa (japonica cultivar-group) OsRFC1 mRNA for replication factor C 110 kDa subunit, complete cds Length = 3392 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ggaatagagagatccttgaa 77 |||||||||||||||||||| Sbjct: 2346 ggaatagagagatccttgaa 2365
>dbj|D89259.1| Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1708 Length = 1601 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 tgaggtctgagcacaccaac 26 |||||||||||||||||||| Sbjct: 1148 tgaggtctgagcacaccaac 1129 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,960,197 Number of Sequences: 3902068 Number of extensions: 2960197 Number of successful extensions: 56021 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55648 Number of HSP's gapped (non-prelim): 373 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
