Clone Name | bastl56d01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SYD_SYNS9 (Q3AVS9) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... | 30 | 2.7 | 2 | SYD_PROMA (Q7V9I1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... | 30 | 3.5 | 3 | SYD_GLOVI (Q7NJA4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... | 28 | 7.7 | 4 | SYD_SYNPX (Q7U3K6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... | 28 | 7.7 |
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>SYD_SYNS9 (Q3AVS9) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 610 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -3 Query: 431 VSPTKIAVGDWVALPETHQLGLSNLLPVGIPR 336 V P+++ GDW ALP++ QL L+ GI R Sbjct: 183 VLPSRVCGGDWFALPQSPQLFKQLLMVGGIER 214
>SYD_PROMA (Q7V9I1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 605 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 425 PTKIAVGDWVALPETHQLGLSNLLPVGIPR 336 P+++ GDW ALP++ QL L+ GI R Sbjct: 185 PSRVCEGDWFALPQSPQLFKQLLMVGGIER 214
>SYD_GLOVI (Q7NJA4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 595 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 425 PTKIAVGDWVALPETHQLGLSNLLPVGIPR 336 P+++ GDW ALP++ QL L+ G R Sbjct: 182 PSRVNPGDWFALPQSPQLFKQLLMVAGFDR 211
>SYD_SYNPX (Q7U3K6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 610 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 431 VSPTKIAVGDWVALPETHQLGLSNLLPVGIPR 336 V P+++ G+W ALP++ QL L+ GI R Sbjct: 183 VLPSRVCGGEWFALPQSPQLFKQLLMVGGIER 214 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,816,824 Number of Sequences: 219361 Number of extensions: 785555 Number of successful extensions: 2317 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2268 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2316 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)