ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYD_SYNS9 (Q3AVS9) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 30 2.7
2SYD_PROMA (Q7V9I1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 30 3.5
3SYD_GLOVI (Q7NJA4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 28 7.7
4SYD_SYNPX (Q7U3K6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 28 7.7

>SYD_SYNS9 (Q3AVS9) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 610

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 431 VSPTKIAVGDWVALPETHQLGLSNLLPVGIPR 336
           V P+++  GDW ALP++ QL    L+  GI R
Sbjct: 183 VLPSRVCGGDWFALPQSPQLFKQLLMVGGIER 214



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>SYD_PROMA (Q7V9I1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 605

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 425 PTKIAVGDWVALPETHQLGLSNLLPVGIPR 336
           P+++  GDW ALP++ QL    L+  GI R
Sbjct: 185 PSRVCEGDWFALPQSPQLFKQLLMVGGIER 214



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>SYD_GLOVI (Q7NJA4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 595

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 425 PTKIAVGDWVALPETHQLGLSNLLPVGIPR 336
           P+++  GDW ALP++ QL    L+  G  R
Sbjct: 182 PSRVNPGDWFALPQSPQLFKQLLMVAGFDR 211



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>SYD_SYNPX (Q7U3K6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 610

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 431 VSPTKIAVGDWVALPETHQLGLSNLLPVGIPR 336
           V P+++  G+W ALP++ QL    L+  GI R
Sbjct: 183 VLPSRVCGGEWFALPQSPQLFKQLLMVGGIER 214


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,816,824
Number of Sequences: 219361
Number of extensions: 785555
Number of successful extensions: 2317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2316
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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