>CLAP1_HUMAN (Q7Z460) CLIP-associating protein 1 (Cytoplasmic linker-associated|
           protein 1) (Multiple asters homolog 1)
          Length = 1538

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 108 AAKPDARGRSRAGKIHEREHGHTPHPPHCLPRARKKAFLIAVGEGG 245
           A+ PD RGRSRA  + + +   + +P     R+     L+  G GG
Sbjct: 654 ASTPDNRGRSRAKVVSQSQRSRSANPAGAGSRSSSPGKLLGSGYGG 699

>YCAI_ECOLI (P37443) Hypothetical protein ycaI|
          Length = 754

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 18/63 (28%)
 Frame = -2

Query: 283 GLWMRW---------------WWWCRAPPPSPTAIKKA---FLRARGRQWGGCGVWPCSL 158
           G W+ W               W     PP   T +  A    L+  GRQW G  VW C L
Sbjct: 252 GRWIHWQIPLIGGICCAAFYAWLTGMQPPALRTMVALATWGMLKLSGRQWSGWDVWICCL 311

Query: 157 SWI 149
           + I
Sbjct: 312 AAI 314

>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 130 PRASGFAAACKQRQQWRTPGVRDRDEKTRLNWIGSDRREGER 5
           PR   + +    R   R+P +RDRD + R ++  +DRR G R
Sbjct: 410 PRRDSYRSRYGDRSNSRSPPLRDRD-RIRTDYYDNDRRRGYR 450

>TRI45_MOUSE (Q6PFY8) Tripartite motif protein 45|
          Length = 580

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = +3

Query: 39  FNLVFSSRSRT-PGVRHCCRCLQAAAKPDAR---GRSRAGKIHEREHGHTPHP--PH 191
           FN+    + R  PGV HCC    +  +  AR   G +  G      HGH  HP  PH
Sbjct: 493 FNVTVRRKHRPHPGVFHCCTFCSSGGQKAARCACGGTMPGGYLGCGHGHKGHPGRPH 549

>SMRC1_HUMAN (Q92922) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 1 (SWI/SNF
           complex 155 kDa subunit) (BRG1-associated factor 155)
          Length = 1105

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 22/97 (22%), Positives = 38/97 (39%)
 Frame = +3

Query: 30  PIQFNLVFSSRSRTPGVRHCCRCLQAAAKPDARGRSRAGKIHEREHGHTPHPPHCLPRAR 209
           P+ F    S+++  P              P+ R R  +    +R+H  +P PP     +R
Sbjct: 293 PVSFRQRISTKNEEP-----------VRSPERRDRKASANARKRKHSPSP-PPPTPTESR 340

Query: 210 KKAFLIAVGEGGGAXXXXXXXXXKPQDHKEQTKRESE 320
           KK+     G+ G A         K +D +E   ++ E
Sbjct: 341 KKS-----GKKGQASLYGKRRSQKEEDEQEDLTKDME 372

>XE7_HUMAN (Q02040) B-lymphocyte antigen precursor (B-lymphocyte surface|
           antigen) (721P) (Protein XE7)
          Length = 695

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 323 AFRLCPAHGVYIKP---PVVSLVCVRSAAPLKSHFAWE 427
           A  LCPA+G+Y+KP     +S+   +   P KS   WE
Sbjct: 13  AVELCPAYGLYLKPITKMTISVALPQLKQPGKSISNWE 50

>HXB5_XENLA (P09019) Homeobox protein Hox-B5 (XlHbox-4) (Xhox-1B) (Fragment)|
          Length = 230

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +2

Query: 125 PGQVKSREDPRERTRPHSTPTPLPAASAQKS 217
           PGQ  SR    +   P STP PLP A +QKS
Sbjct: 50  PGQESSRFRANQNC-PLSTPDPLPCAKSQKS 79

>FLGN_YEREN (Q56854) Flagella synthesis protein flgN|
          Length = 147

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 416 NGILTEQQSAHTPETLLVV*YTPHGQ 339
           NG+L +Q   H  + L V+ YTPHGQ
Sbjct: 102 NGLLLQQHIEHNTQALAVL-YTPHGQ 126

>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = -2

Query: 259 WCRAPPP-SPTA--IKKAFLRA-RGRQWGGCGVW 170
           W  +PPP SPT+  +++  L A +   WGGC +W
Sbjct: 61  WTTSPPPASPTSGSLRRPTLSASKATCWGGCTIW 94

>US6NL_HUMAN (Q92738) USP6 N-terminal-like protein (Related to the N-terminus of|
           tre) (RN-tre)
          Length = 828

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 75  GVRHCCRCLQAAAKPD--ARGRSRAGKIHEREHGHTPHP 185
           GV H     ++  +P   A GR  +G  H R H H+PHP
Sbjct: 381 GVHHLSNGQRSVGRPSPLASGRRESGAPHRR-HEHSPHP 418


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,698,463
Number of Sequences: 219361
Number of extensions: 1472441
Number of successful extensions: 4755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4746
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)