ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WOX9_ARATH (Q6X7J4) WUSCHEL-related homeobox 9 29 4.4
2RL15_BRUSU (Q8G090) 50S ribosomal protein L15 28 9.9
3RL15_BRUME (Q8YHM1) 50S ribosomal protein L15 28 9.9
4RL15_BRUAB (Q57CS7) 50S ribosomal protein L15 28 9.9

>WOX9_ARATH (Q6X7J4) WUSCHEL-related homeobox 9|
          Length = 378

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 244 KHPPPQNRPQGAQQPRTSDSXXXXXXXAESTRETK 140
           KH  PQ +PQ   QP  S S       ++ST+  K
Sbjct: 123 KHSLPQTQPQPQPQPSASSSSSSSSSSSKSTKPRK 157



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>RL15_BRUSU (Q8G090) 50S ribosomal protein L15|
          Length = 156

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 220 VYFEVAGVCVPAMEEPNAGGGAVAAPEVIAD 312
           V FEVAG    A+E+    GG++  PE  A+
Sbjct: 126 VAFEVAGASKAAVEKIEKAGGSIKLPEAAAE 156



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>RL15_BRUME (Q8YHM1) 50S ribosomal protein L15|
          Length = 156

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 220 VYFEVAGVCVPAMEEPNAGGGAVAAPEVIAD 312
           V FEVAG    A+E+    GG++  PE  A+
Sbjct: 126 VAFEVAGASKAAVEKIEKAGGSIKLPEAAAE 156



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>RL15_BRUAB (Q57CS7) 50S ribosomal protein L15|
          Length = 156

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 220 VYFEVAGVCVPAMEEPNAGGGAVAAPEVIAD 312
           V FEVAG    A+E+    GG++  PE  A+
Sbjct: 126 VAFEVAGASKAAVEKIEKAGGSIKLPEAAAE 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,393,278
Number of Sequences: 219361
Number of extensions: 414772
Number of successful extensions: 1530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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