ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
2dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
3dbj|AK121684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
4ref|NM_188008.1| Oryza sativa (japonica cultivar-group), Ozsa842... 56 1e-04
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
6gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 48 0.024
7emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb... 48 0.024
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.024
9emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa... 48 0.024
10gb|AE005964.1| Caulobacter crescentus CB15 section 290 of 359 of... 44 0.38
11ref|NM_183869.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
12gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
13gb|AY496708.1| Pandanus amaryllifolius fructose-bisphosphate ald... 42 1.5
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15ref|NM_204104.1| Gallus gallus retina and anterior neural fold h... 42 1.5
16dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
18dbj|AK100992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
19dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
20emb|CR956624.6| Pig DNA sequence from clone CH242-281E17 on chro... 42 1.5
21gb|AF420600.1| Gallus gallus homeobox transcription factor RAX1 ... 42 1.5
22dbj|AB020318.1| Gallus gallus mRNA for homeobox protein cRax/Rax... 42 1.5
23gb|DQ215052.1| Taeniopygia guttata clone 0058P0020B08 H2A histon... 40 5.9
24gb|DQ215051.1| Taeniopygia guttata clone 0061P0027A01 H2A histon... 40 5.9
25gb|DQ215050.1| Taeniopygia guttata clone 0058P0007H05 H2A histon... 40 5.9
26gb|DQ215048.1| Taeniopygia guttata clone 0058P0013F02 H2A histon... 40 5.9
27gb|DQ215047.1| Taeniopygia guttata clone 0058P0026B08 H2A histon... 40 5.9
28gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.9
29gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
30gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
31gb|AC105743.8| Oryza sativa chromosome 3 BAC OSJNBa0035N15 genom... 40 5.9
32ref|XM_364388.1| Magnaporthe grisea 70-15 predicted protein (MG0... 40 5.9
33gb|AC141880.3| Mus musculus BAC clone RP24-220N1 from chromosome... 40 5.9
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.9
35gb|AC125540.4| Mus musculus BAC clone RP23-229O18 from chromosom... 40 5.9
36gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.9
37gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.9
38gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complet... 40 5.9
39gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, comple... 40 5.9
40dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.9
41dbj|AK172262.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 5.9
42gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 5.9
43dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
44dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
45dbj|AP003706.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
46dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
47dbj|AK071624.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
48gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 5.9
49emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.9
50dbj|AK059409.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
51gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 40 5.9
52gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.9
53gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
54gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete... 40 5.9
55gb|M12856.1|CHKUGU2 Chicken U2 small nuclear RNA gene 40 5.9 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 8e-21
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                           
Query: 347     cccccgcctcgccgtggaggaagaccacgccgccgcctgtcgcaggggaggcagcggtca 406
               ||||||| || || |||||||||||||||||||||||||| || || ||||| | |||||
Sbjct: 9074064 cccccgcgtctccctggaggaagaccacgccgccgcctgtggcgggtgaggcggtggtca 9074123

                                              
Query: 407     tgggggccgagtcgtggcccgcgctggagga 437
               |||||||| ||||||||||||||||||||||
Sbjct: 9074124 tgggggccaagtcgtggcccgcgctggagga 9074154



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 280      ggcgccgtggcggcgccggag 300
                |||||||||||||||||||||
Sbjct: 12791463 ggcgccgtggcggcgccggag 12791443



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 50       ccacggcggcggcggcccca 69
                ||||||||||||||||||||
Sbjct: 27534420 ccacggcggcggcggcccca 27534439
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>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0499C11
          Length = 151369

 Score =  109 bits (55), Expect = 8e-21
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                          
Query: 347    cccccgcctcgccgtggaggaagaccacgccgccgcctgtcgcaggggaggcagcggtca 406
              ||||||| || || |||||||||||||||||||||||||| || || ||||| | |||||
Sbjct: 103071 cccccgcgtctccctggaggaagaccacgccgccgcctgtggcgggtgaggcggtggtca 103130

                                             
Query: 407    tgggggccgagtcgtggcccgcgctggagga 437
              |||||||| ||||||||||||||||||||||
Sbjct: 103131 tgggggccaagtcgtggcccgcgctggagga 103161
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>dbj|AK121684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070C16, full
           insert sequence
          Length = 3448

 Score =  109 bits (55), Expect = 8e-21
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                       
Query: 347 cccccgcctcgccgtggaggaagaccacgccgccgcctgtcgcaggggaggcagcggtca 406
           ||||||| || || |||||||||||||||||||||||||| || || ||||| | |||||
Sbjct: 454 cccccgcgtctccctggaggaagaccacgccgccgcctgtggcgggtgaggcggtggtca 513

                                          
Query: 407 tgggggccgagtcgtggcccgcgctggagga 437
           |||||||| ||||||||||||||||||||||
Sbjct: 514 tgggggccaagtcgtggcccgcgctggagga 544
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>ref|NM_188008.1| Oryza sativa (japonica cultivar-group), Ozsa8428 predicted mRNA
          Length = 2787

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 406 atgggggccgagtcgtggcccgcgctggagga 437
           ||||||||| ||||||||||||||||||||||
Sbjct: 1   atgggggccaagtcgtggcccgcgctggagga 32
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 281      gcgccgtggcggcgccggaggtga 304
                ||||||||||||||||||||||||
Sbjct: 20866871 gcgccgtggcggcgccggaggtga 20866848
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 274    ggcggcggcgccgtggcggcgccg 297
              ||||||||||||||||||||||||
Sbjct: 285426 ggcggcggcgccgtggcggcgccg 285449
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>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101075

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 281   gcgccgtggcggcgccggaggtga 304
             ||||||||||||||||||||||||
Sbjct: 68598 gcgccgtggcggcgccggaggtga 68575
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 281      gcgccgtggcggcgccggaggtga 304
                ||||||||||||||||||||||||
Sbjct: 20793085 gcgccgtggcggcgccggaggtga 20793062
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>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107819

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 281   gcgccgtggcggcgccggaggtga 304
             ||||||||||||||||||||||||
Sbjct: 92124 gcgccgtggcggcgccggaggtga 92147
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>gb|AE005964.1| Caulobacter crescentus CB15 section 290 of 359 of the complete genome
          Length = 10554

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 325  ggggccagcggcggcgctggctcccccgcc 354
            |||||||||||||||||| |||| ||||||
Sbjct: 1338 ggggccagcggcggcgctcgctcgcccgcc 1309
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>ref|NM_183869.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1155

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 280 ggcgccgtggcggcgccggag 300
           |||||||||||||||||||||
Sbjct: 401 ggcgccgtggcggcgccggag 381
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>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
             complete sequence
          Length = 131860

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 274   ggcggcggcgccgtggcggcg 294
             |||||||||||||||||||||
Sbjct: 75015 ggcggcggcgccgtggcggcg 74995
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>gb|AY496708.1| Pandanus amaryllifolius fructose-bisphosphate aldolase (FBA) mRNA,
           complete cds
          Length = 1077

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 291 ggcgccggaggtgatagcgga 311
           |||||||||||||||||||||
Sbjct: 714 ggcgccggaggtgatagcgga 734
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 274      ggcggcggcgccgtggcggcg 294
                |||||||||||||||||||||
Sbjct: 22373380 ggcggcggcgccgtggcggcg 22373360



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 53      cggcggcggcggccccatggctgc 76
               ||||||||||||| ||||||||||
Sbjct: 6486776 cggcggcggcggcgccatggctgc 6486799
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>ref|NM_204104.1| Gallus gallus retina and anterior neural fold homeobox (RAX), mRNA
          Length = 1230

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 54  ggcggcggcggccccatggct 74
           |||||||||||||||||||||
Sbjct: 993 ggcggcggcggccccatggct 973
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>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0489E06
          Length = 140229

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 280   ggcgccgtggcggcgccggag 300
             |||||||||||||||||||||
Sbjct: 71862 ggcgccgtggcggcgccggag 71842
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>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0554D10
          Length = 158723

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 280    ggcgccgtggcggcgccggag 300
              |||||||||||||||||||||
Sbjct: 158492 ggcgccgtggcggcgccggag 158472
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>dbj|AK100992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146F09, full
           insert sequence
          Length = 1581

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 280 ggcgccgtggcggcgccggag 300
           |||||||||||||||||||||
Sbjct: 554 ggcgccgtggcggcgccggag 534
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>dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039G20, full
           insert sequence
          Length = 2880

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 274 ggcggcggcgccgtggcggcg 294
           |||||||||||||||||||||
Sbjct: 209 ggcggcggcgccgtggcggcg 189
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>emb|CR956624.6| Pig DNA sequence from clone CH242-281E17 on chromosome 17, complete
             sequence
          Length = 155839

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 392   gggaggcagcggtcatggggg 412
             |||||||||||||||||||||
Sbjct: 30150 gggaggcagcggtcatggggg 30170
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>gb|AF420600.1| Gallus gallus homeobox transcription factor RAX1 (RAX1) mRNA,
           complete cds
          Length = 1230

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 54  ggcggcggcggccccatggct 74
           |||||||||||||||||||||
Sbjct: 993 ggcggcggcggccccatggct 973
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>dbj|AB020318.1| Gallus gallus mRNA for homeobox protein cRax/Rax2/Rx2, complete cds
          Length = 1195

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 54  ggcggcggcggccccatggct 74
           |||||||||||||||||||||
Sbjct: 826 ggcggcggcggccccatggct 806
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>gb|DQ215052.1| Taeniopygia guttata clone 0058P0020B08 H2A histone family member
          V variant 1-like mRNA, complete sequence
          Length = 704

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 52 acggcggcggcggccccatggctg 75
          |||||||||||||| |||||||||
Sbjct: 31 acggcggcggcggcaccatggctg 54
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>gb|DQ215051.1| Taeniopygia guttata clone 0061P0027A01 H2A histone family member
          V variant 1-like mRNA, complete sequence
          Length = 707

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 52 acggcggcggcggccccatggctg 75
          |||||||||||||| |||||||||
Sbjct: 34 acggcggcggcggcaccatggctg 57
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>gb|DQ215050.1| Taeniopygia guttata clone 0058P0007H05 H2A histone family member
          V variant 1-like mRNA, complete sequence
          Length = 701

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 52 acggcggcggcggccccatggctg 75
          |||||||||||||| |||||||||
Sbjct: 28 acggcggcggcggcaccatggctg 51
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>gb|DQ215048.1| Taeniopygia guttata clone 0058P0013F02 H2A histone family member
          V variant 1-like mRNA, complete sequence
          Length = 685

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 52 acggcggcggcggccccatggctg 75
          |||||||||||||| |||||||||
Sbjct: 11 acggcggcggcggcaccatggctg 34
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>gb|DQ215047.1| Taeniopygia guttata clone 0058P0026B08 H2A histone family member
          V variant 1-like mRNA, complete sequence
          Length = 729

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 52 acggcggcggcggccccatggctg 75
          |||||||||||||| |||||||||
Sbjct: 56 acggcggcggcggcaccatggctg 79
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>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940117D9, complete sequence
          Length = 143368

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    gcggcgccgtggcggcgccg 297
              ||||||||||||||||||||
Sbjct: 119764 gcggcgccgtggcggcgccg 119783
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>gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0115F21, complete sequence
          Length = 128493

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    cggcggcggcggccccatggctgc 76
             ||||||||||||| ||||||||||
Sbjct: 49464 cggcggcggcggcgccatggctgc 49487
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>gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0084F23, complete sequence
          Length = 89829

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   ggcggcggcgccgtggcggc 293
             ||||||||||||||||||||
Sbjct: 20992 ggcggcggcgccgtggcggc 21011
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>gb|AC105743.8| Oryza sativa chromosome 3 BAC OSJNBa0035N15 genomic sequence, complete
             sequence
          Length = 171120

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 322   ggcggggccagcggcggcgctggc 345
             ||||||||| ||||||||||||||
Sbjct: 30166 ggcggggcctgcggcggcgctggc 30189
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>ref|XM_364388.1| Magnaporthe grisea 70-15 predicted protein (MG09233.4) partial mRNA
          Length = 1641

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   cggcggcggcggccccatgg 72
            ||||||||||||||||||||
Sbjct: 1449 cggcggcggcggccccatgg 1468
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>gb|AC141880.3| Mus musculus BAC clone RP24-220N1 from chromosome 15, complete sequence
          Length = 185646

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     gcggcggccccatggctgct 77
              ||||||||||||||||||||
Sbjct: 158189 gcggcggccccatggctgct 158208
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 322      ggcggggccagcggcggcgctggc 345
                ||||||||| ||||||||||||||
Sbjct: 18747719 ggcggggcctgcggcggcgctggc 18747696



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 279     cggcgccgtggcggcgccgg 298
               ||||||||||||||||||||
Sbjct: 7648582 cggcgccgtggcggcgccgg 7648563
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>gb|AC125540.4| Mus musculus BAC clone RP23-229O18 from chromosome 15, complete sequence
          Length = 162455

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     gcggcggccccatggctgct 77
              ||||||||||||||||||||
Sbjct: 154499 gcggcggccccatggctgct 154480
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   gcgggcggcggcgccgtggc 290
             ||||||||||||||||||||
Sbjct: 41483 gcgggcggcggcgccgtggc 41502
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>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0096L14, from chromosome 3, complete sequence
          Length = 131142

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   cggcgccgtggcggcgccgg 298
             ||||||||||||||||||||
Sbjct: 66708 cggcgccgtggcggcgccgg 66727
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>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence
          Length = 48498

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 322   ggcggggccagcggcggcgctggc 345
             ||||||| ||||||||||||||||
Sbjct: 23693 ggcggggtcagcggcggcgctggc 23670
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>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence
          Length = 79677

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 322  ggcggggccagcggcggcgctggc 345
            ||||||| ||||||||||||||||
Sbjct: 2407 ggcggggtcagcggcggcgctggc 2384
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 49      accacggcggcggcggcccc 68
               ||||||||||||||||||||
Sbjct: 3148730 accacggcggcggcggcccc 3148749
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>dbj|AK172262.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830111E09 product:unclassifiable, full
            insert sequence
          Length = 1610

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 58   gcggcggccccatggctgct 77
            ||||||||||||||||||||
Sbjct: 1553 gcggcggccccatggctgct 1534
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 275     gcggcggcgccgtggcggcg 294
               ||||||||||||||||||||
Sbjct: 2095705 gcggcggcgccgtggcggcg 2095686
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 274     ggcggcggcgccgtggcggc 293
               ||||||||||||||||||||
Sbjct: 7537108 ggcggcggcgccgtggcggc 7537089
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 322      ggcggggccagcggcggcgctggc 345
                ||||||||| ||||||||||||||
Sbjct: 18741760 ggcggggcctgcggcggcgctggc 18741737



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 279     cggcgccgtggcggcgccgg 298
               ||||||||||||||||||||
Sbjct: 7646417 cggcgccgtggcggcgccgg 7646398
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>dbj|AP003706.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1125_C04
          Length = 98476

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    ccacggcggcggcggcccca 69
             ||||||||||||||||||||
Sbjct: 55123 ccacggcggcggcggcccca 55142
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>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0007F06
          Length = 150817

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   ccacggcggcggcggcccca 69
            ||||||||||||||||||||
Sbjct: 1714 ccacggcggcggcggcccca 1733
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>dbj|AK071624.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106M18, full
           insert sequence
          Length = 1012

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 ggcggggccagcggcggcgctggc 345
           ||||||||| ||||||||||||||
Sbjct: 455 ggcggggcctgcggcggcgctggc 478
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 336     cggcgctggctcccccgcct 355
               ||||||||||||||||||||
Sbjct: 2049837 cggcgctggctcccccgcct 2049856
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 363     gaggaagaccacgccgccgcctgt 386
               |||||||||| |||||||||||||
Sbjct: 1564524 gaggaagacctcgccgccgcctgt 1564547
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>dbj|AK059409.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C05, full
           insert sequence
          Length = 1026

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 279 cggcgccgtggcggcgccgg 298
           ||||||||||||||||||||
Sbjct: 147 cggcgccgtggcggcgccgg 166
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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gtgcctgcgatggaagagcc 266
             ||||||||||||||||||||
Sbjct: 41556 gtgcctgcgatggaagagcc 41575
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 271     gcgggcggcggcgccgtggc 290
               ||||||||||||||||||||
Sbjct: 1144692 gcgggcggcggcgccgtggc 1144711
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 274     ggcggcggcgccgtggcggc 293
               ||||||||||||||||||||
Sbjct: 7607194 ggcggcggcgccgtggcggc 7607175
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>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence
          Length = 53591

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 271   gcgggcggcggcgccgtggcggcg 294
             |||||||||| |||||||||||||
Sbjct: 46289 gcgggcggcgccgccgtggcggcg 46266
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>gb|M12856.1|CHKUGU2 Chicken U2 small nuclear RNA gene
          Length = 840

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 271 gcgggcggcggcgccgtggcggcg 294
           ||||| ||||||||||||||||||
Sbjct: 246 gcggggggcggcgccgtggcggcg 269


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,676,766
Number of Sequences: 3902068
Number of extensions: 3676766
Number of successful extensions: 106227
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103188
Number of HSP's gapped (non-prelim): 3039
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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