>UVRA_HAEIN (P44410) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 943

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +3

Query: 237 DHTIDVLSAGSGSGNH----LSEGNKDELGMGANNIRQDLLASSSGSSAPEFELLWRLRK 404
           DH ID+   G G+G H    +++GN DE+ +  N+I    L+ +     P+       +K
Sbjct: 555 DHIIDI---GPGAGVHGGQVIAQGNADEIMLNPNSITGKFLSGADKIEIPKKRTALDKKK 611

Query: 405 YLVMLG 422
           +L + G
Sbjct: 612 WLKLKG 617

>PCX_DROME (P18490) Protein pecanex|
          Length = 3433

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
 Frame = +3

Query: 252  VLSAGSGSGNHLSEGNKDELGMGANNIRQDLLASSSGSSAP-------EFELLWRLRKYL 410
            +L  G+G+G   +E +++  G GAN    +  ++ +G+  P       +  +  RL+  L
Sbjct: 1774 ILGTGTGTGTGTTEASENGSGGGANG---NTNSNGTGNDLPDPLPRKLQATVTTRLKNDL 1830

Query: 411  VMLGVLAVSV 440
            V++ +LAVSV
Sbjct: 1831 VVMTLLAVSV 1840

>BRC4_DROME (Q24206) Broad-complex core-protein isoform 6|
          Length = 880

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 222 NDGQYDHTIDVLSAGSGSGNHLSEGNKDELGMG 320
           ND   +H  +  S+G G    LS GN +E+G G
Sbjct: 346 NDSTGEHDANRSSSGDGGKGSLSSGNDEEIGDG 378

>UVRA_VIBPA (Q87LA0) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 237 DHTIDV-LSAGSGSGNHLSEGNKDELGMGANNIRQDLLASSSGSSAPEFELLWRLRKYLV 413
           DH ID+   AG   GN ++EG  DE+    N++    L+ +   + P+       +K + 
Sbjct: 554 DHVIDIGPGAGVHGGNVVAEGTMDEIIANPNSLTGQYLSGAKEIAVPKERTPRDPKKTVE 613

Query: 414 MLG 422
           +LG
Sbjct: 614 LLG 616

>HYR1_CANAL (P46591) Hyphally-regulated protein precursor|
          Length = 937

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 207 SNHMENDGQYDHTIDVLSAGSGSGNHLSEGNKDELGMGANNIRQDLLASSSGSS 368
           SNH  N+G          +GSGSG++   G+  + G G+ +       S+SGS+
Sbjct: 693 SNHGSNEGS--------GSGSGSGSNNGSGSGSQSGSGSGSQSGSESGSNSGSN 738

>BRC1_DROME (Q01295) Broad-complex core-protein isoforms 1/2/3/4/5|
          Length = 727

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 222 NDGQYDHTIDVLSAGSGSGNHLSEGNKDELGMG 320
           ND   +H  +  S+G G    LS GN +E+G G
Sbjct: 346 NDSTGEHDANRSSSGDGGKGSLSSGNDEEIGDG 378

>Y4AD_RHISN (P55351) Hypothetical 32.5 kDa protein y4aD|
          Length = 292

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +3

Query: 249 DVLSAGSGSGNHLSEGNKDELGMGANNIRQDLLASSSGSSAPE 377
           DVL AG    NHL +  KD L +    I +D L S+SG+S  E
Sbjct: 147 DVLCAGLQVCNHLQDCGKDFLNLNRVYIPRDAL-SASGASIEE 188


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,840,927
Number of Sequences: 219361
Number of extensions: 1142488
Number of successful extensions: 2608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2599
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)