Clone Name | bastl56c01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 378 tttgagctcctgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagt 437 ||||||||| |||||||| |||||||||| | |||||||||| | |||||||||| ||| Sbjct: 10584892 tttgagctcttgtggagactgcggaagtaccttgtaatgcttgcaatcttagcagtcagt 10584833 Query: 438 gtgacatacaatgcgggatta 458 |||||||| ||||| |||||| Sbjct: 10584832 gtgacatataatgctggatta 10584812 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 388 tgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagtgtgacataca 447 ||||||| || ||||||||||| || |||||||| | ||||||| |||||||||||| Sbjct: 10572193 tgtggagtttacggaagtatttgatactgcttggaaccatagcagtcggtgtgacataca 10572134 Query: 448 atgcgggatta 458 |||| |||||| Sbjct: 10572133 atgctggatta 10572123
>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1026E06 Length = 162784 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 378 tttgagctcctgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagt 437 ||||||||| |||||||| |||||||||| | |||||||||| | |||||||||| ||| Sbjct: 161506 tttgagctcttgtggagactgcggaagtaccttgtaatgcttgcaatcttagcagtcagt 161447 Query: 438 gtgacatacaatgcgggatta 458 |||||||| ||||| |||||| Sbjct: 161446 gtgacatataatgctggatta 161426 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 388 tgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagtgtgacataca 447 ||||||| || ||||||||||| || |||||||| | ||||||| |||||||||||| Sbjct: 148807 tgtggagtttacggaagtatttgatactgcttggaaccatagcagtcggtgtgacataca 148748 Query: 448 atgcgggatta 458 |||| |||||| Sbjct: 148747 atgctggatta 148737
>dbj|AP005761.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1066D09 Length = 183999 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 378 tttgagctcctgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagt 437 ||||||||| |||||||| |||||||||| | |||||||||| | |||||||||| ||| Sbjct: 121599 tttgagctcttgtggagactgcggaagtaccttgtaatgcttgcaatcttagcagtcagt 121540 Query: 438 gtgacatacaatgcgggatta 458 |||||||| ||||| |||||| Sbjct: 121539 gtgacatataatgctggatta 121519 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 388 tgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagtgtgacataca 447 ||||||| || ||||||||||| || |||||||| | ||||||| |||||||||||| Sbjct: 108900 tgtggagtttacggaagtatttgatactgcttggaaccatagcagtcggtgtgacataca 108841 Query: 448 atgcgggatta 458 |||| |||||| Sbjct: 108840 atgctggatta 108830
>emb|X97570.1|ZMDEK34 Z.mays dek34 gene Length = 5267 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 379 ttgagctcctgtggagattgcggaagta 406 ||||||||||||||||| |||||||||| Sbjct: 1417 ttgagctcctgtggagactgcggaagta 1444
>gb|AY110442.1| Zea mays CL1457_1 mRNA sequence Length = 4170 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 379 ttgagctcctgtggagattgcggaagta 406 ||||||||||||||||| |||||||||| Sbjct: 542 ttgagctcctgtggagactgcggaagta 569
>emb|CT025688.6| Mouse DNA sequence from clone RP24-310A8 on chromosome 9, complete sequence Length = 233365 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 373 ctgagtttgagctcctgtggaga 395 ||||||||||||||||||||||| Sbjct: 177286 ctgagtttgagctcctgtggaga 177308
>dbj|AP001028.7| Homo sapiens genomic DNA, chromosome 18 clone:RP11-858C4, complete sequence Length = 172036 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 aatctgttcatcactttgggta 93 |||||||||||||||||||||| Sbjct: 89679 aatctgttcatcactttgggta 89658
>dbj|AP001029.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-861E21, complete sequence Length = 209897 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 aatctgttcatcactttgggta 93 |||||||||||||||||||||| Sbjct: 181081 aatctgttcatcactttgggta 181060
>ref|NM_196166.1| Oryza sativa (japonica cultivar-group) putative pyridoxamine 5-phosphate oxidase (OSJNBa0095C06.17), mRNA Length = 1422 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ttcatcactttgggtacaagc 98 ||||||||||||||||||||| Sbjct: 260 ttcatcactttgggtacaagc 280
>gb|AC110575.18| Mus musculus chromosome 3, clone RP23-326B21, complete sequence Length = 176678 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 146 ccatggcagatgcaagcttagatag 170 |||||||| |||||||||||||||| Sbjct: 66503 ccatggcaaatgcaagcttagatag 66479
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06, complete sequence Length = 135774 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 ttcatcactttgggtacaagc 98 ||||||||||||||||||||| Sbjct: 10089 ttcatcactttgggtacaagc 10069
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 ttcatcactttgggtacaagc 98 ||||||||||||||||||||| Sbjct: 140147 ttcatcactttgggtacaagc 140127
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 ttcatcactttgggtacaagc 98 ||||||||||||||||||||| Sbjct: 11556154 ttcatcactttgggtacaagc 11556134
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 ggaagtatttagtaatgcttg 420 ||||||||||||||||||||| Sbjct: 26373755 ggaagtatttagtaatgcttg 26373735
>gb|AC146266.4| Pan troglodytes BAC clone RP43-30L11 from chromosome 7, complete sequence Length = 187603 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 catttgagtgaaggcaacaag 302 ||||||||||||||||||||| Sbjct: 95211 catttgagtgaaggcaacaag 95231
>gb|AC022173.7|AC022173 Homo sapiens chromosome 7 clone RP11-29B3, complete sequence Length = 155136 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 catttgagtgaaggcaacaag 302 ||||||||||||||||||||| Sbjct: 25779 catttgagtgaaggcaacaag 25759
>dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_D11 Length = 109399 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 ggaagtatttagtaatgcttg 420 ||||||||||||||||||||| Sbjct: 27995 ggaagtatttagtaatgcttg 27975
>gb|AC009263.6|AC009263 Homo sapiens clone RP11-377B19 from 7q31.3, complete sequence Length = 182502 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 catttgagtgaaggcaacaag 302 ||||||||||||||||||||| Sbjct: 59715 catttgagtgaaggcaacaag 59735
>dbj|AK099380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070K02, full insert sequence Length = 2002 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ttcatcactttgggtacaagc 98 ||||||||||||||||||||| Sbjct: 412 ttcatcactttgggtacaagc 432
>dbj|AK066800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075K07, full insert sequence Length = 2083 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ttcatcactttgggtacaagc 98 ||||||||||||||||||||| Sbjct: 511 ttcatcactttgggtacaagc 531
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 ttcatcactttgggtacaagc 98 ||||||||||||||||||||| Sbjct: 11562594 ttcatcactttgggtacaagc 11562574
>ref|NG_000007.3| Homo sapiens beta globin region (HBB@) on chromosome 11 Length = 81706 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 aatgccttcccatggcagat 156 |||||||||||||||||||| Sbjct: 40203 aatgccttcccatggcagat 40222
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 Length = 1282697 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ttgagtgaaggcaacaagga 304 |||||||||||||||||||| Sbjct: 719212 ttgagtgaaggcaacaagga 719231
>gb|AC154175.2| Ornithorhynchus anatinus chromosome UNK clone OABb-419P24, complete sequence Length = 163751 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 acaacatcaggcaagattta 344 |||||||||||||||||||| Sbjct: 41766 acaacatcaggcaagattta 41785
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 atctgttcatcactttgggt 92 |||||||||||||||||||| Sbjct: 13325102 atctgttcatcactttgggt 13325121
>gb|AC104389.8| Homo sapiens chromosome 11, clone CTD-2643I7, complete sequence Length = 207343 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 aatgccttcccatggcagat 156 |||||||||||||||||||| Sbjct: 59753 aatgccttcccatggcagat 59734
>ref|XM_236397.3| PREDICTED: Rattus norvegicus phosphatidylinositol glycan, class B (predicted) (Pigb_predicted), mRNA Length = 1941 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 gagctcctgtggagattgcggaag 404 ||||| |||||||||||||||||| Sbjct: 293 gagctgctgtggagattgcggaag 270
>dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0622F08 Length = 140628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 atctgttcatcactttgggt 92 |||||||||||||||||||| Sbjct: 133029 atctgttcatcactttgggt 133048
>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1521_G01 Length = 144102 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 atctgttcatcactttgggt 92 |||||||||||||||||||| Sbjct: 50353 atctgttcatcactttgggt 50372 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,579,492 Number of Sequences: 3902068 Number of extensions: 3579492 Number of successful extensions: 55748 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55610 Number of HSP's gapped (non-prelim): 138 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)