ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
2dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AP005761.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4emb|X97570.1|ZMDEK34 Z.mays dek34 gene 48 0.025
5gb|AY110442.1| Zea mays CL1457_1 mRNA sequence 48 0.025
6emb|CT025688.6| Mouse DNA sequence from clone RP24-310A8 on chro... 46 0.10
7dbj|AP001028.7| Homo sapiens genomic DNA, chromosome 18 clone:RP... 44 0.40
8dbj|AP001029.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 44 0.40
9ref|NM_196166.1| Oryza sativa (japonica cultivar-group) putative... 42 1.6
10gb|AC110575.18| Mus musculus chromosome 3, clone RP23-326B21, co... 42 1.6
11gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
12gb|AC079935.3| Genomic sequence for Oryza sativa (japonica culti... 42 1.6
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15gb|AC146266.4| Pan troglodytes BAC clone RP43-30L11 from chromos... 42 1.6
16gb|AC022173.7|AC022173 Homo sapiens chromosome 7 clone RP11-29B3... 42 1.6
17dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18gb|AC009263.6|AC009263 Homo sapiens clone RP11-377B19 from 7q31.... 42 1.6
19dbj|AK099380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
20dbj|AK066800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
21gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
22ref|NG_000007.3| Homo sapiens beta globin region (HBB@) on chrom... 40 6.2
23dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 40 6.2
24gb|AC154175.2| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 6.2
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
26gb|AC104389.8| Homo sapiens chromosome 11, clone CTD-2643I7, com... 40 6.2
27ref|XM_236397.3| PREDICTED: Rattus norvegicus phosphatidylinosit... 40 6.2
28dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
29dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                            
Query: 378      tttgagctcctgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagt 437
                ||||||||| |||||||| ||||||||||  | |||||||||| | |||||||||| |||
Sbjct: 10584892 tttgagctcttgtggagactgcggaagtaccttgtaatgcttgcaatcttagcagtcagt 10584833

                                     
Query: 438      gtgacatacaatgcgggatta 458
                |||||||| ||||| ||||||
Sbjct: 10584832 gtgacatataatgctggatta 10584812



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                            
Query: 388      tgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagtgtgacataca 447
                ||||||| || |||||||||||  || ||||||||  | |||||||  ||||||||||||
Sbjct: 10572193 tgtggagtttacggaagtatttgatactgcttggaaccatagcagtcggtgtgacataca 10572134

                           
Query: 448      atgcgggatta 458
                |||| ||||||
Sbjct: 10572133 atgctggatta 10572123



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>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1026E06
          Length = 162784

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                          
Query: 378    tttgagctcctgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagt 437
              ||||||||| |||||||| ||||||||||  | |||||||||| | |||||||||| |||
Sbjct: 161506 tttgagctcttgtggagactgcggaagtaccttgtaatgcttgcaatcttagcagtcagt 161447

                                   
Query: 438    gtgacatacaatgcgggatta 458
              |||||||| ||||| ||||||
Sbjct: 161446 gtgacatataatgctggatta 161426



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                          
Query: 388    tgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagtgtgacataca 447
              ||||||| || |||||||||||  || ||||||||  | |||||||  ||||||||||||
Sbjct: 148807 tgtggagtttacggaagtatttgatactgcttggaaccatagcagtcggtgtgacataca 148748

                         
Query: 448    atgcgggatta 458
              |||| ||||||
Sbjct: 148747 atgctggatta 148737



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>dbj|AP005761.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1066D09
          Length = 183999

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                          
Query: 378    tttgagctcctgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagt 437
              ||||||||| |||||||| ||||||||||  | |||||||||| | |||||||||| |||
Sbjct: 121599 tttgagctcttgtggagactgcggaagtaccttgtaatgcttgcaatcttagcagtcagt 121540

                                   
Query: 438    gtgacatacaatgcgggatta 458
              |||||||| ||||| ||||||
Sbjct: 121539 gtgacatataatgctggatta 121519



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                          
Query: 388    tgtggagattgcggaagtatttagtaatgcttggagtcttagcagttagtgtgacataca 447
              ||||||| || |||||||||||  || ||||||||  | |||||||  ||||||||||||
Sbjct: 108900 tgtggagtttacggaagtatttgatactgcttggaaccatagcagtcggtgtgacataca 108841

                         
Query: 448    atgcgggatta 458
              |||| ||||||
Sbjct: 108840 atgctggatta 108830



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>emb|X97570.1|ZMDEK34 Z.mays dek34 gene
          Length = 5267

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 379  ttgagctcctgtggagattgcggaagta 406
            ||||||||||||||||| ||||||||||
Sbjct: 1417 ttgagctcctgtggagactgcggaagta 1444



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>gb|AY110442.1| Zea mays CL1457_1 mRNA sequence
          Length = 4170

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 379 ttgagctcctgtggagattgcggaagta 406
           ||||||||||||||||| ||||||||||
Sbjct: 542 ttgagctcctgtggagactgcggaagta 569



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>emb|CT025688.6| Mouse DNA sequence from clone RP24-310A8 on chromosome 9, complete
              sequence
          Length = 233365

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 373    ctgagtttgagctcctgtggaga 395
              |||||||||||||||||||||||
Sbjct: 177286 ctgagtttgagctcctgtggaga 177308



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>dbj|AP001028.7| Homo sapiens genomic DNA, chromosome 18 clone:RP11-858C4, complete
             sequence
          Length = 172036

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 72    aatctgttcatcactttgggta 93
             ||||||||||||||||||||||
Sbjct: 89679 aatctgttcatcactttgggta 89658



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>dbj|AP001029.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-861E21, complete
              sequence
          Length = 209897

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 72     aatctgttcatcactttgggta 93
              ||||||||||||||||||||||
Sbjct: 181081 aatctgttcatcactttgggta 181060



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>ref|NM_196166.1| Oryza sativa (japonica cultivar-group) putative pyridoxamine
           5-phosphate oxidase (OSJNBa0095C06.17), mRNA
          Length = 1422

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 78  ttcatcactttgggtacaagc 98
           |||||||||||||||||||||
Sbjct: 260 ttcatcactttgggtacaagc 280



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>gb|AC110575.18| Mus musculus chromosome 3, clone RP23-326B21, complete sequence
          Length = 176678

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 146   ccatggcagatgcaagcttagatag 170
             |||||||| ||||||||||||||||
Sbjct: 66503 ccatggcaaatgcaagcttagatag 66479



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>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06,
             complete sequence
          Length = 135774

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 78    ttcatcactttgggtacaagc 98
             |||||||||||||||||||||
Sbjct: 10089 ttcatcactttgggtacaagc 10069



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>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
              Nipponbare clone OSJNBa0095C06, from Chromosome 10,
              complete sequence
          Length = 156159

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 78     ttcatcactttgggtacaagc 98
              |||||||||||||||||||||
Sbjct: 140147 ttcatcactttgggtacaagc 140127



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 78       ttcatcactttgggtacaagc 98
                |||||||||||||||||||||
Sbjct: 11556154 ttcatcactttgggtacaagc 11556134



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 400      ggaagtatttagtaatgcttg 420
                |||||||||||||||||||||
Sbjct: 26373755 ggaagtatttagtaatgcttg 26373735



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>gb|AC146266.4| Pan troglodytes BAC clone RP43-30L11 from chromosome 7, complete
             sequence
          Length = 187603

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   catttgagtgaaggcaacaag 302
             |||||||||||||||||||||
Sbjct: 95211 catttgagtgaaggcaacaag 95231



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>gb|AC022173.7|AC022173 Homo sapiens chromosome 7 clone RP11-29B3, complete sequence
          Length = 155136

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 282   catttgagtgaaggcaacaag 302
             |||||||||||||||||||||
Sbjct: 25779 catttgagtgaaggcaacaag 25759



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>dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_D11
          Length = 109399

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 400   ggaagtatttagtaatgcttg 420
             |||||||||||||||||||||
Sbjct: 27995 ggaagtatttagtaatgcttg 27975



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>gb|AC009263.6|AC009263 Homo sapiens clone RP11-377B19 from 7q31.3, complete sequence
          Length = 182502

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   catttgagtgaaggcaacaag 302
             |||||||||||||||||||||
Sbjct: 59715 catttgagtgaaggcaacaag 59735



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>dbj|AK099380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070K02, full
           insert sequence
          Length = 2002

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 78  ttcatcactttgggtacaagc 98
           |||||||||||||||||||||
Sbjct: 412 ttcatcactttgggtacaagc 432



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>dbj|AK066800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075K07, full
           insert sequence
          Length = 2083

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 78  ttcatcactttgggtacaagc 98
           |||||||||||||||||||||
Sbjct: 511 ttcatcactttgggtacaagc 531



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 78       ttcatcactttgggtacaagc 98
                |||||||||||||||||||||
Sbjct: 11562594 ttcatcactttgggtacaagc 11562574



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>ref|NG_000007.3| Homo sapiens beta globin region (HBB@) on chromosome 11
          Length = 81706

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   aatgccttcccatggcagat 156
             ||||||||||||||||||||
Sbjct: 40203 aatgccttcccatggcagat 40222



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>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    ttgagtgaaggcaacaagga 304
              ||||||||||||||||||||
Sbjct: 719212 ttgagtgaaggcaacaagga 719231



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>gb|AC154175.2| Ornithorhynchus anatinus chromosome UNK clone OABb-419P24, complete
             sequence
          Length = 163751

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   acaacatcaggcaagattta 344
             ||||||||||||||||||||
Sbjct: 41766 acaacatcaggcaagattta 41785



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 73       atctgttcatcactttgggt 92
                ||||||||||||||||||||
Sbjct: 13325102 atctgttcatcactttgggt 13325121



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>gb|AC104389.8| Homo sapiens chromosome 11, clone CTD-2643I7, complete sequence
          Length = 207343

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   aatgccttcccatggcagat 156
             ||||||||||||||||||||
Sbjct: 59753 aatgccttcccatggcagat 59734



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>ref|XM_236397.3| PREDICTED: Rattus norvegicus phosphatidylinositol glycan, class B
           (predicted) (Pigb_predicted), mRNA
          Length = 1941

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 381 gagctcctgtggagattgcggaag 404
           ||||| ||||||||||||||||||
Sbjct: 293 gagctgctgtggagattgcggaag 270



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>dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0622F08
          Length = 140628

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     atctgttcatcactttgggt 92
              ||||||||||||||||||||
Sbjct: 133029 atctgttcatcactttgggt 133048



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>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1521_G01
          Length = 144102

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    atctgttcatcactttgggt 92
             ||||||||||||||||||||
Sbjct: 50353 atctgttcatcactttgggt 50372


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,579,492
Number of Sequences: 3902068
Number of extensions: 3579492
Number of successful extensions: 55748
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55610
Number of HSP's gapped (non-prelim): 138
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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