ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56b10 |
|---|---|
| Clone Library Name | barley_pub |
>SM3L3_ARATH (Q9FIY7) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 3 (EC 3.6.1.-) (SMARCA3-like protein 3) Length = 1277 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = +1 Query: 166 MGKSSKKNKVILAPPLPPDVDDEDILVSDEDVDFVEENREHVHL 297 +GK+ +ILA P + ++ED+LV+D + D + NR+ +H+ Sbjct: 691 LGKTVMTIALILARPGRGNPENEDVLVADVNAD--KRNRKEIHM 732
>FKBP3_YARLI (Q6C4C9) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) Length = 407 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +1 Query: 220 DVDDEDILVSDEDVDFVEENREHVHLITGLNRKALDKVVTRVPDHDEDQ 366 D DDED DED + E+ + + N LD+V D D+D+ Sbjct: 71 DEDDEDEDDDDEDDEVSAEDMAQIKKLIAANEDGLDEVEGGDDDEDDDE 119
>IF2_PARUW (Q6MD64) Translation initiation factor IF-2| Length = 920 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/59 (27%), Positives = 31/59 (52%) Frame = +1 Query: 82 FLLPRP*NLRGQRPLRGSSTHSRFVSYSMGKSSKKNKVILAPPLPPDVDDEDILVSDED 258 F+ P+P R RPL ++++ + VS + + KNK+ P ++ +L +D+D Sbjct: 210 FIKPKPQPERVSRPLEANNSNQKEVSEANKEKLDKNKI---KPKSKGFEEPKVLTADDD 265
>CTN3_HUMAN (Q9UI47) Alpha-3 catenin (Alpha T-catenin) (Cadherin-associated| protein) Length = 895 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +3 Query: 42 RLPLPGRKDLRPPLSPTATVKLARSASASGKLNPLQICVVFHG 170 R+ P +K L P T R SA K++PLQ+ F G Sbjct: 849 RMKAPAKKPLIKREKPEETCAAVRRGSAKKKIHPLQVMSEFRG 891
>SYI_HALSA (Q9HN97) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1070 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 199 LAPPLPPDVDDEDILVSDEDVDFVEENREHV 291 LA + D+ +DI ++ E V+FVEE EHV Sbjct: 932 LAEQVAADLGRDDIELTTEMVEFVEETPEHV 962
>Y585_ARCFU (O29670) Hypothetical protein AF0585| Length = 90 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/42 (26%), Positives = 27/42 (64%) Frame = -1 Query: 303 GDQVDVLSILLDEIHILVGDQDVLVVDIRRQRRREDDLVLLA 178 GD D+L+++L I++L+G ++ + +R +++ L+ L+ Sbjct: 2 GDYFDILTLILTAIYLLIGGGFIIYIYDTYKRTKQEFLIYLS 43
>CP19A_MOUSE (P28649) Cytochrome P450 19A1 (EC 1.14.14.1) (Aromatase) (CYPXIX)| (Estrogen synthetase) (P-450AROM) Length = 503 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = -1 Query: 291 DVLSILLDEIHILVGDQDVLVVDIR 217 +V + +L EIH +VGD+D+ + DI+ Sbjct: 327 EVEAAILKEIHTVVGDRDIKIEDIQ 351
>Y250_AQUAE (O66611) Hypothetical protein aq_250| Length = 145 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 95 DRETCEVSVRFGEAQPTPDLCRIPWGR 175 ++ T + R GE P P LC IPW R Sbjct: 79 EKGTYGICERCGEEIPEPRLCAIPWTR 105
>STB3_ASHGO (Q750U1) Protein STB3| Length = 511 Score = 28.1 bits (61), Expect = 9.2 Identities = 21/85 (24%), Positives = 37/85 (43%) Frame = +1 Query: 112 GQRPLRGSSTHSRFVSYSMGKSSKKNKVILAPPLPPDVDDEDILVSDEDVDFVEENREHV 291 G R SS++++ S ++ + +LA P DE+ L SD+D + EE+ + Sbjct: 207 GVHEARRSSSNAKKGGKSGSFLNELKRPMLAAPTASIYIDENALASDDDEEDDEEDEHDM 266 Query: 292 HLITGLNRKALDKVVTRVPDHDEDQ 366 L R+ V P+ + Q Sbjct: 267 LNYENLKRRQPSVVAVEPPELSDQQ 291
>KPR1_YEAST (P32895) Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1)| (Phosphoribosyl pyrophosphate synthetase 1) Length = 427 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +1 Query: 226 DDEDILVSDEDVDFVEENREHVHLITGLNRKALDKVVTRVPDHDEDQV 369 DDE +D+D D + E+ +H I GL+ L V DE+++ Sbjct: 258 DDE----ADDDEDAILESDSELHSIDGLDSHGLGGTYDAVDSEDEEEI 301
>COG4_YEAST (Q06096) Conserved oligomeric Golgi complex component 4 (Complexed| with DOR1 protein 1) (SEC38 protein) Length = 861 Score = 28.1 bits (61), Expect = 9.2 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 11/93 (11%) Frame = +1 Query: 124 LRGSSTHSRFVSYSMGKSSKKNKVILAPPLPPDVDDEDILVSDEDVDFVEENREHVHLIT 303 L+ S +SRF S + S + +L PP PP D + L +D F E V ++ Sbjct: 382 LQNWSMYSRFYSVKWNEFSDLHPHVLQPP-PPIADGKFALKLKQDKVFDE---FQVFVLN 437 Query: 304 GLNRK-----------ALDKVVTRVPDHDEDQV 369 L R +L+ ++T VP +D D + Sbjct: 438 HLQRSFRNSISLEELPSLNDLITAVPLNDHDNI 470
>MSCL_XYLFT (Q87FA1) Large-conductance mechanosensitive channel| Length = 134 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 187 NKVILAPPLPPDVDDEDILVSDEDVDFVEE 276 NKVI PLPP+ ED+L+ E D +++ Sbjct: 105 NKVINKQPLPPETPSEDVLLLREIRDSLKK 134
>MSCL_XYLFA (Q9PHA5) Large-conductance mechanosensitive channel| Length = 134 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 187 NKVILAPPLPPDVDDEDILVSDEDVDFVEE 276 NKVI PLPP+ ED+L+ E D +++ Sbjct: 105 NKVINKQPLPPETPSEDVLLLREIRDSLKK 134 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,072,822 Number of Sequences: 219361 Number of extensions: 707560 Number of successful extensions: 3060 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2960 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3051 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
