ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56b08 |
|---|---|
| Clone Library Name | barley_pub |
>RPA1_TRYBB (P16355) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| Length = 1744 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -2 Query: 299 IHEEDPEKDGIGGGDTRNPQRLAGSRRTGAREQC*RISADPEVAD 165 +H + + GI G DT PQR GS +G + ++D E AD Sbjct: 1411 LHSDGTDTRGIAGSDTGGPQRRRGSVESGRGDD----ASDSEAAD 1451
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 3.2 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Frame = +3 Query: 27 PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVV--GHLRIC-* 188 P SPAP P L+A + S N R + + GG+ ADPV C Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158 Query: 189 NPSALLPCSCSPTPGQPL-RIASISPSDS 272 +P P S SP G P R+ SIS S S Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 3.2 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Frame = +3 Query: 27 PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVV--GHLRIC-* 188 P SPAP P L+A + S N R + + GG+ ADPV C Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158 Query: 189 NPSALLPCSCSPTPGQPL-RIASISPSDS 272 +P P S SP G P R+ SIS S S Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 3.2 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Frame = +3 Query: 27 PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVV--GHLRIC-* 188 P SPAP P L+A + S N R + + GG+ ADPV C Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158 Query: 189 NPSALLPCSCSPTPGQPL-RIASISPSDS 272 +P P S SP G P R+ SIS S S Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187
>NEB1_HUMAN (Q9ULJ8) Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin| binding protein I) (Protein phosphatase 1 regulatory subunit 9A) Length = 1098 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 89 RRKPERSIHEGGDRRRGAAPACRSGGRPPQD 181 R+ ERS+HE G R + ++GG PQD Sbjct: 143 RKMFERSVHESGQNNRYSPKKEKAGGSEPQD 173
>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1459 Score = 29.6 bits (65), Expect = 4.1 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +2 Query: 83 LPRRKPERSIHEGGDRRRGAAPACRSGGRPPQDLLKSFSIAPLLLFSDSRP 235 LP KP +I+ G+RR + RPP L S + PLLL + P Sbjct: 504 LPSSKPRYAINHSGERRPSISQ------RPPTRLTPSVFVPPLLLGNIENP 548
>M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) Length = 1493 Score = 29.3 bits (64), Expect = 5.4 Identities = 21/61 (34%), Positives = 25/61 (40%) Frame = -2 Query: 212 AREQC*RISADPEVADHRICTPEQLPAGGPRPHGSISRVFSSARTLGES*EG*ARVGGG* 33 A C S PE AD PA GP P G+ SR S + L + + AR G Sbjct: 87 ASPPCPSTSPSPEPADAAAGASRFQPAAGPPPPGAASRCGSHSAELAAARDSGARSPAGA 146 Query: 32 E 30 E Sbjct: 147 E 147
>SYTL2_HUMAN (Q9HCH5) Synaptotagmin-like protein 2 (Exophilin-4)| Length = 895 Score = 28.9 bits (63), Expect = 7.1 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -2 Query: 392 QNGFAINNSGKVAFNRTFREKILHQIPACDLIHEEDPEKDGIGGGDTRNPQR 237 +N IN + T E +L + PA +L H +PE + GG +R+ Q+ Sbjct: 420 ENSPTINEPKDKSSELTRLESVLPRSPADELSHCVEPEPSQVPGGSSRDRQQ 471
>M3K1_RAT (Q62925) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) Length = 1493 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/61 (34%), Positives = 25/61 (40%) Frame = -2 Query: 212 AREQC*RISADPEVADHRICTPEQLPAGGPRPHGSISRVFSSARTLGES*EG*ARVGGG* 33 A C S PE AD PA GP P G+ SR S + L + + AR G Sbjct: 82 ASPPCPSTSPSPEPADAAAGASGFQPAAGPPPPGAASRCGSHSAELAAARDSGARSPAGA 141 Query: 32 E 30 E Sbjct: 142 E 142
>OTRA_STRRM (Q55002) Oxytetracycline resistance protein| Length = 663 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -3 Query: 298 FTRRIPKRTESEGEILAIRRGW-PGVGEQEQGSNAEG 191 F +R+P T+ EG LA RG+ P VG+ EG Sbjct: 610 FNQRVPGLTQGEGVFLAEHRGYRPAVGQPPVRPRPEG 646
>AGUA_ERWCT (Q6CZ80) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine| iminohydrolase) Length = 368 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -2 Query: 338 REKILHQIPACDLIHEEDPEKDGIGGGDTRNPQRLAGSRRTGA 210 RE + ++PA +H E G+ GD +RLAGSR G+ Sbjct: 265 RELKIWKLPAPGPLHATKEEAQGVDSGDA--VERLAGSRLAGS 305 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,307,132 Number of Sequences: 219361 Number of extensions: 1493819 Number of successful extensions: 4437 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4247 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4433 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
