ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56b01 |
|---|---|
| Clone Library Name | barley_pub |
>RS26_ORYSA (P49216) 40S ribosomal protein S26 (S31)| Length = 133 Score = 138 bits (348), Expect = 5e-33 Identities = 62/66 (93%), Positives = 63/66 (95%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 VKYIRCSNCAKCCPKDKAIKRF VRNIVEQ A+RDVQE CVHDGYVLPKLYAKVHHCVSC Sbjct: 18 VKYIRCSNCAKCCPKDKAIKRFQVRNIVEQVAIRDVQEGCVHDGYVLPKLYAKVHHCVSC 77 Query: 332 AIHAHI 349 AIHAHI Sbjct: 78 AIHAHI 83
>RS26_ARATH (P49206) 40S ribosomal protein S26| Length = 131 Score = 119 bits (297), Expect = 4e-27 Identities = 55/83 (66%), Positives = 62/83 (74%) Frame = +2 Query: 101 MTFXXXXXXXXXXXXXXVKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHD 280 MTF V IRCSNC KCCPKDKAIKRF+VRNIVEQAA+RDVQEA V++ Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60 Query: 281 GYVLPKLYAKVHHCVSCAIHAHI 349 GY LPKLYAK +CVSCAIH+H+ Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHV 83
>RS26_DROME (P13008) 40S ribosomal protein S26 (DS31)| Length = 114 Score = 107 bits (267), Expect = 1e-23 Identities = 46/66 (69%), Positives = 58/66 (87%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 VK +RC+NCA+C PKDKAIK+F++RNIVE AAVRD+ EA + D YVLPKLYAK+H+CVSC Sbjct: 18 VKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSC 77 Query: 332 AIHAHI 349 AIH+ + Sbjct: 78 AIHSKV 83
>RS26_ANOGA (Q9GT45) 40S ribosomal protein S26| Length = 114 Score = 106 bits (265), Expect = 2e-23 Identities = 45/66 (68%), Positives = 58/66 (87%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 VK +RC+NCA+C PKDKAIK+F++RNIVE AAVRD+ +A V+ YVLPKLYAK+H+CVSC Sbjct: 17 VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYVLPKLYAKLHYCVSC 76 Query: 332 AIHAHI 349 AIH+ + Sbjct: 77 AIHSKV 82
>RS26_RAT (P62856) 40S ribosomal protein S26| Length = 114 Score = 105 bits (263), Expect = 4e-23 Identities = 46/66 (69%), Positives = 57/66 (86%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 V+ IRC+NCA+C PKDKAIK+F++RNIVE AAVRD+ EA V D YVLPKLY K+H+CVSC Sbjct: 17 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSC 76 Query: 332 AIHAHI 349 AIH+ + Sbjct: 77 AIHSKV 82
>RS26_MOUSE (P62855) 40S ribosomal protein S26| Length = 114 Score = 105 bits (263), Expect = 4e-23 Identities = 46/66 (69%), Positives = 57/66 (86%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 V+ IRC+NCA+C PKDKAIK+F++RNIVE AAVRD+ EA V D YVLPKLY K+H+CVSC Sbjct: 17 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSC 76 Query: 332 AIHAHI 349 AIH+ + Sbjct: 77 AIHSKV 82
>RS26_MACFA (P61251) 40S ribosomal protein S26| Length = 114 Score = 105 bits (263), Expect = 4e-23 Identities = 46/66 (69%), Positives = 57/66 (86%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 V+ IRC+NCA+C PKDKAIK+F++RNIVE AAVRD+ EA V D YVLPKLY K+H+CVSC Sbjct: 17 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSC 76 Query: 332 AIHAHI 349 AIH+ + Sbjct: 77 AIHSKV 82
>RS26_HUMAN (P62854) 40S ribosomal protein S26| Length = 114 Score = 105 bits (263), Expect = 4e-23 Identities = 46/66 (69%), Positives = 57/66 (86%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 V+ IRC+NCA+C PKDKAIK+F++RNIVE AAVRD+ EA V D YVLPKLY K+H+CVSC Sbjct: 17 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSC 76 Query: 332 AIHAHI 349 AIH+ + Sbjct: 77 AIHSKV 82
>RS26_SHEEP (Q6Q312) 40S ribosomal protein S26| Length = 114 Score = 105 bits (261), Expect = 7e-23 Identities = 46/66 (69%), Positives = 57/66 (86%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 V+ IRC+NCA+C PKDKAIK+F++RNIVE AAVRD+ EA V D YVLPKLY K+H+CVSC Sbjct: 17 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEAGVFDAYVLPKLYVKLHYCVSC 76 Query: 332 AIHAHI 349 AIH+ + Sbjct: 77 AIHSKV 82
>RS26_OCTVU (P27085) 40S ribosomal protein S26| Length = 127 Score = 104 bits (260), Expect = 9e-23 Identities = 46/66 (69%), Positives = 58/66 (87%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 VKYIRC+NCA+C PKDKAIK+F++RNIVE AAVRD+ +A V++ Y LPKLYAK+ +CVSC Sbjct: 18 VKYIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYALPKLYAKLLYCVSC 77 Query: 332 AIHAHI 349 AIH+ I Sbjct: 78 AIHSKI 83
>RS26_CRICR (P30742) 40S ribosomal protein S26| Length = 114 Score = 104 bits (259), Expect = 1e-22 Identities = 45/66 (68%), Positives = 57/66 (86%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 V+ IRC+NCA+C PKDKAIK+F++RNIVE AAVRD+ EA V D YVLPKLY ++H+CVSC Sbjct: 17 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVELHYCVSC 76 Query: 332 AIHAHI 349 AIH+ + Sbjct: 77 AIHSKV 82
>RS26_PIG (P49171) 40S ribosomal protein S26| Length = 114 Score = 103 bits (256), Expect = 2e-22 Identities = 45/66 (68%), Positives = 56/66 (84%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 V+ IRC+NCA+C PKDKAIK+F++RNIVE AAVR + EA V D YVLPKLY K+H+CVSC Sbjct: 17 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRXISEASVFDAYVLPKLYVKLHYCVSC 76 Query: 332 AIHAHI 349 AIH+ + Sbjct: 77 AIHSKV 82
>RS26_CAEEL (O45499) 40S ribosomal protein S26| Length = 117 Score = 101 bits (251), Expect = 9e-22 Identities = 44/83 (53%), Positives = 58/83 (69%) Frame = +2 Query: 101 MTFXXXXXXXXXXXXXXVKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHD 280 MTF V +IRC+NC +CCPKDKAIK+F+VRNIVE AAVRD+ +A + Sbjct: 1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60 Query: 281 GYVLPKLYAKVHHCVSCAIHAHI 349 Y LPKLY K+H+C++CAIH+ + Sbjct: 61 QYALPKLYHKLHYCIACAIHSKV 83
>RS26_BRUPA (P41959) 40S ribosomal protein S26 (Fragment)| Length = 83 Score = 99.0 bits (245), Expect = 5e-21 Identities = 42/66 (63%), Positives = 54/66 (81%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 V+ IRC+NC +C PKDKAIK+F+VRNIV AAVRD+ +A +D Y LPKLY K+H+CVSC Sbjct: 18 VRPIRCTNCGRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHYCVSC 77 Query: 332 AIHAHI 349 AIH+ + Sbjct: 78 AIHSKV 83
>RS26_SCHCO (O93931) 40S ribosomal protein S26| Length = 126 Score = 97.8 bits (242), Expect = 1e-20 Identities = 40/66 (60%), Positives = 54/66 (81%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 V ++RCSNC++C KDKAIKRF VRN+VE AA+RD+ +A V+ Y +PKLY K+ +CVSC Sbjct: 18 VTFVRCSNCSRCVAKDKAIKRFTVRNMVESAAIRDISDASVYPEYAIPKLYIKIAYCVSC 77 Query: 332 AIHAHI 349 AIH+H+ Sbjct: 78 AIHSHV 83
>RS26_NEUCR (P21772) 40S ribosomal protein S26E (CRP5) (13.6 kDa ribosomal| protein) Length = 119 Score = 94.7 bits (234), Expect = 9e-20 Identities = 41/66 (62%), Positives = 52/66 (78%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 VK IRCSNC++C PKDKAIKRF +RN+VE AA+RD+ +A V Y +PK+Y K+ +CVSC Sbjct: 18 VKPIRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYTVPKMYLKLQYCVSC 77 Query: 332 AIHAHI 349 AIH I Sbjct: 78 AIHGKI 83
>RS26B_YEAST (P39939) 40S ribosomal protein S26-B| Length = 119 Score = 94.7 bits (234), Expect = 9e-20 Identities = 44/66 (66%), Positives = 51/66 (77%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 VK +RC NC+K PKDKAIKR +RNIVE AAVRD+ EA V+ Y LPK Y K+H+CVSC Sbjct: 18 VKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSC 77 Query: 332 AIHAHI 349 AIHA I Sbjct: 78 AIHARI 83
>RS26A_YEAST (P39938) 40S ribosomal protein S26-A| Length = 119 Score = 94.7 bits (234), Expect = 9e-20 Identities = 44/66 (66%), Positives = 51/66 (77%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 VK +RC NC+K PKDKAIKR +RNIVE AAVRD+ EA V+ Y LPK Y K+H+CVSC Sbjct: 18 VKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSC 77 Query: 332 AIHAHI 349 AIHA I Sbjct: 78 AIHARI 83
>RS26B_SCHPO (Q9UTG4) 40S ribosomal protein S26-B| Length = 119 Score = 92.4 bits (228), Expect = 4e-19 Identities = 38/66 (57%), Positives = 53/66 (80%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSC 331 VK++RC NC++ PKDKAIKR+ +RN+VE AA+RD+ EA V+ Y +PKLY K+ +CVSC Sbjct: 18 VKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSC 77 Query: 332 AIHAHI 349 AIH+ + Sbjct: 78 AIHSRV 83
>RS26A_SCHPO (Q9UT56) 40S ribosomal protein S26-A| Length = 120 Score = 90.9 bits (224), Expect = 1e-18 Identities = 37/65 (56%), Positives = 52/65 (80%) Frame = +2 Query: 155 KYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCA 334 K++RC NC++ PKDKAIKR+ +RN+VE AA+RD+ EA V+ Y +PK+Y K+ +CVSCA Sbjct: 19 KFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCA 78 Query: 335 IHAHI 349 IHA + Sbjct: 79 IHARV 83
>RS26_OXYNO (Q9BHU1) 40S ribosomal protein S26| Length = 125 Score = 73.9 bits (180), Expect = 2e-13 Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 2/65 (3%) Frame = +2 Query: 161 IRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQE--ACVHDGYVLPKLYAKVHHCVSCA 334 +RC+NC + KDKAIKRF RN+V+ ++ RD+QE A + +PK+Y K+ +CVSCA Sbjct: 21 VRCTNCGRVVSKDKAIKRFQQRNMVDASSKRDIQENYAYAQSDFTMPKIYVKLSYCVSCA 80 Query: 335 IHAHI 349 IHA I Sbjct: 81 IHARI 85
>RS26_MUSVI (P41692) 40S ribosomal protein S26 (Fragment)| Length = 40 Score = 37.4 bits (85), Expect = 0.017 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = +2 Query: 152 VKYIRCSNCAKCCPKDKAIKRFL 220 V+ IRC+N A+C PKDKAIK+F+ Sbjct: 17 VQPIRCTNLARCVPKDKAIKKFV 39
>YFCK_SHIFL (Q83QQ8) UPF0209 protein yfcK| Length = 668 Score = 30.4 bits (67), Expect = 2.0 Identities = 11/40 (27%), Positives = 22/40 (55%) Frame = +2 Query: 221 VRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIH 340 V +I + ++++ +DGY+ P+ A HHC+ + H Sbjct: 483 VSHIPTTPELAELKQVLCYDGYLTPQNPANQHHCIGASYH 522
>YFCK_ECOLI (P77182) UPF0209 protein yfcK| Length = 668 Score = 30.4 bits (67), Expect = 2.0 Identities = 11/40 (27%), Positives = 22/40 (55%) Frame = +2 Query: 221 VRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIH 340 V +I + ++++ +DGY+ P+ A HHC+ + H Sbjct: 483 VSHIPTTPELAELKQVLCYDGYLTPQNPANQHHCIGASYH 522
>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed| Length = 596 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/35 (42%), Positives = 16/35 (45%) Frame = -1 Query: 323 HSGAPWHTAWGEHIHHAHKPPAHLSQQPAPQCSSP 219 H P H H HH H P QQP+PQ S P Sbjct: 94 HHQHPHHHQLPHHPHHQHHP----QQQPSPQTSPP 124
>KPC1_COCHE (O42632) Protein kinase C-like (EC 2.7.11.13)| Length = 1174 Score = 30.0 bits (66), Expect = 2.7 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 22/84 (26%) Frame = +2 Query: 161 IRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEA--------------------CVHD 280 ++CS+C C K K + + + I + A D EA C H Sbjct: 485 MQCSDCNYTCHK-KCYPKVVTKCITQSNAETDPDEAKLNHRIPHRFENFSNMGANWCCHC 543 Query: 281 GYVLPKLYAKVHHCVSCAI--HAH 346 GYVLP + C C + HAH Sbjct: 544 GYVLPLGRKQTKKCNECGLTCHAH 567
>DHAS_PROMA (P49420) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA| dehydrogenase) (ASADH) Length = 343 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +3 Query: 306 PRCTTVFLVPSMLTLSVSAPVRTGGTVSPRSVSGAGTTAL 425 P CTT+ L + LS P++ + +S SGAG A+ Sbjct: 135 PNCTTILLALVLAPLSAQLPIKRVVVSTYQSASGAGARAM 174
>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible| leucine zipper protein 4) Length = 780 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +3 Query: 327 LVPSMLTLSVSAPVRTGGTVSPRSVSGAGTTAL 425 L+ L + +AP GG VS RSVSGA + L Sbjct: 89 LLDGQLAAAAAAPANGGGVVSARSVSGALASTL 121
>Y3185_PHOLL (Q7N2A3) UPF0209 protein plu3185| Length = 680 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/42 (28%), Positives = 19/42 (45%) Frame = +2 Query: 221 VRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAH 346 V +I + +Q +DGY+ P A HHC+ + H Sbjct: 490 VSHIPTTTDLSQLQNVLCYDGYMTPANPANQHHCIGASYQRH 531
>YFCK_ECOL6 (Q8FFH0) UPF0209 protein yfcK| Length = 668 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/40 (27%), Positives = 21/40 (52%) Frame = +2 Query: 221 VRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIH 340 V +I + +++ +DGY+ P+ A HHC+ + H Sbjct: 483 VSHIPTTPELAKLKQVLCYDGYLTPQNPANQHHCIGASYH 522
>YFCK_ECO57 (Q8XCQ7) UPF0209 protein yfcK| Length = 668 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/40 (27%), Positives = 21/40 (52%) Frame = +2 Query: 221 VRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIH 340 V +I + +++ +DGY+ P+ A HHC+ + H Sbjct: 483 VSHIPTTPELAKLKQVLCYDGYLTPQNPANQHHCIGASYH 522
>KPC1_YEAST (P24583) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)| Length = 1151 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +2 Query: 269 CVHDGYVLPKLYAKVHHCVSCAIHAH 346 C H GY+LP KV C C I H Sbjct: 495 CCHCGYILPWGRHKVRKCSECGIMCH 520 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,627,982 Number of Sequences: 219361 Number of extensions: 724237 Number of successful extensions: 2917 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2744 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2897 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
