ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56a12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 192 bits (97), Expect = 6e-46 Identities = 145/161 (90%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 5402574 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 5402633 Query: 325 gcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaaccccaagcgccgcttccgc 384 |||||||| |||||||||| | | |||||||||||||||||||||||||| || |||||| Sbjct: 5402634 gcgctggggcgatggcgcaggttggtcggcgtcgtcaagaaccccaagcggcggttccgc 5402693 Query: 385 ttcaccgccaacctcggcaagcgatccgaggccgccgccat 425 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 5402694 ttcaccgccaacctcgacaagcgatccgaggccgccgccat 5402734 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 aggtcgtcggcgtcgtcaagaa 365 |||||||||||||||||||||| Sbjct: 31958823 aggtcgtcggcgtcgtcaagaa 31958802
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009J13, from chromosome 3, complete sequence Length = 147205 Score = 192 bits (97), Expect = 6e-46 Identities = 145/161 (90%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 108742 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 108801 Query: 325 gcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaaccccaagcgccgcttccgc 384 |||||||| |||||||||| | | |||||||||||||||||||||||||| || |||||| Sbjct: 108802 gcgctggggcgatggcgcaggttggtcggcgtcgtcaagaaccccaagcggcggttccgc 108861 Query: 385 ttcaccgccaacctcggcaagcgatccgaggccgccgccat 425 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 108862 ttcaccgccaacctcgacaagcgatccgaggccgccgccat 108902
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 192 bits (97), Expect = 6e-46 Identities = 145/161 (90%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 5401789 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 5401848 Query: 325 gcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaaccccaagcgccgcttccgc 384 |||||||| |||||||||| | | |||||||||||||||||||||||||| || |||||| Sbjct: 5401849 gcgctggggcgatggcgcaggttggtcggcgtcgtcaagaaccccaagcggcggttccgc 5401908 Query: 385 ttcaccgccaacctcggcaagcgatccgaggccgccgccat 425 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 5401909 ttcaccgccaacctcgacaagcgatccgaggccgccgccat 5401949 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 aggtcgtcggcgtcgtcaagaa 365 |||||||||||||||||||||| Sbjct: 32049335 aggtcgtcggcgtcgtcaagaa 32049314
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09, complete sequence Length = 153950 Score = 192 bits (97), Expect = 6e-46 Identities = 145/161 (90%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 132356 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 132415 Query: 325 gcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaaccccaagcgccgcttccgc 384 |||||||| |||||||||| | | |||||||||||||||||||||||||| || |||||| Sbjct: 132416 gcgctggggcgatggcgcaggttggtcggcgtcgtcaagaaccccaagcggcggttccgc 132475 Query: 385 ttcaccgccaacctcggcaagcgatccgaggccgccgccat 425 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 132476 ttcaccgccaacctcgacaagcgatccgaggccgccgccat 132516
>dbj|AK121250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101G05, full insert sequence Length = 3548 Score = 192 bits (97), Expect = 6e-46 Identities = 145/161 (90%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 63 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 122 Query: 325 gcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaaccccaagcgccgcttccgc 384 |||||||| |||||||||| | | |||||||||||||||||||||||||| || |||||| Sbjct: 123 gcgctggggcgatggcgcaggttggtcggcgtcgtcaagaaccccaagcggcggttccgc 182 Query: 385 ttcaccgccaacctcggcaagcgatccgaggccgccgccat 425 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 183 ttcaccgccaacctcgacaagcgatccgaggccgccgccat 223
>dbj|AK100415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M18, full insert sequence Length = 3726 Score = 192 bits (97), Expect = 6e-46 Identities = 145/161 (90%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 381 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 440 Query: 325 gcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaaccccaagcgccgcttccgc 384 |||||||| |||||||||| | | |||||||||||||||||||||||||| || |||||| Sbjct: 441 gcgctggggcgatggcgcaggttggtcggcgtcgtcaagaaccccaagcggcggttccgc 500 Query: 385 ttcaccgccaacctcggcaagcgatccgaggccgccgccat 425 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 501 ttcaccgccaacctcgacaagcgatccgaggccgccgccat 541
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 125 bits (63), Expect = 1e-25 Identities = 123/143 (86%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||||| | ||||| ||||| || || ||| | ||| ||||||| || ||| Sbjct: 24519204 atggagagctacctggaggagaatttcggcggggtgaaggcgaagaactcgtcggaggag 24519263 Query: 325 gcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaaccccaagcgccgcttccgc 384 ||||| | || ||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 24519264 gcgctccggcggtggcgcaagctctgcggcgtcgtcaagaaccccaagcgccgcttccgc 24519323 Query: 385 ttcaccgccaacctcggcaagcg 407 |||||||||||||||| |||||| Sbjct: 24519324 ttcaccgccaacctcgacaagcg 24519346 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 257 cgcccgccatggagagctacctcaacg 283 ||||||||| ||||||||||||||||| Sbjct: 25610471 cgcccgccagggagagctacctcaacg 25610497 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 aggtcgtcggcgtcgtcaagaa 365 |||||||||||||||||||||| Sbjct: 20268375 aggtcgtcggcgtcgtcaagaa 20268354
>dbj|AK100436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088M17, full insert sequence Length = 2965 Score = 125 bits (63), Expect = 1e-25 Identities = 123/143 (86%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||||| | ||||| ||||| || || ||| | ||| ||||||| || ||| Sbjct: 263 atggagagctacctggaggagaatttcggcggggtgaaggcgaagaactcgtcggaggag 322 Query: 325 gcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaaccccaagcgccgcttccgc 384 ||||| | || ||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 323 gcgctccggcggtggcgcaagctctgcggcgtcgtcaagaaccccaagcgccgcttccgc 382 Query: 385 ttcaccgccaacctcggcaagcg 407 |||||||||||||||| |||||| Sbjct: 383 ttcaccgccaacctcgacaagcg 405
>dbj|AK066259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H11, full insert sequence Length = 3668 Score = 125 bits (63), Expect = 1e-25 Identities = 123/143 (86%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||||| | ||||| ||||| || || ||| | ||| ||||||| || ||| Sbjct: 280 atggagagctacctggaggagaatttcggcggggtgaaggcgaagaactcgtcggaggag 339 Query: 325 gcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaaccccaagcgccgcttccgc 384 ||||| | || ||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 340 gcgctccggcggtggcgcaagctctgcggcgtcgtcaagaaccccaagcgccgcttccgc 399 Query: 385 ttcaccgccaacctcggcaagcg 407 |||||||||||||||| |||||| Sbjct: 400 ttcaccgccaacctcgacaagcg 422
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 125 bits (63), Expect = 1e-25 Identities = 123/143 (86%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||||| | ||||| ||||| || || ||| | ||| ||||||| || ||| Sbjct: 24447410 atggagagctacctggaggagaatttcggcggggtgaaggcgaagaactcgtcggaggag 24447469 Query: 325 gcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaaccccaagcgccgcttccgc 384 ||||| | || ||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 24447470 gcgctccggcggtggcgcaagctctgcggcgtcgtcaagaaccccaagcgccgcttccgc 24447529 Query: 385 ttcaccgccaacctcggcaagcg 407 |||||||||||||||| |||||| Sbjct: 24447530 ttcaccgccaacctcgacaagcg 24447552 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 257 cgcccgccatggagagctacctcaacg 283 ||||||||| ||||||||||||||||| Sbjct: 25538647 cgcccgccagggagagctacctcaacg 25538673 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 aggtcgtcggcgtcgtcaagaa 365 |||||||||||||||||||||| Sbjct: 20194589 aggtcgtcggcgtcgtcaagaa 20194568
>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120071 Score = 125 bits (63), Expect = 1e-25 Identities = 123/143 (86%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||||| | ||||| ||||| || || ||| | ||| ||||||| || ||| Sbjct: 90235 atggagagctacctggaggagaatttcggcggggtgaaggcgaagaactcgtcggaggag 90294 Query: 325 gcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaaccccaagcgccgcttccgc 384 ||||| | || ||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 90295 gcgctccggcggtggcgcaagctctgcggcgtcgtcaagaaccccaagcgccgcttccgc 90354 Query: 385 ttcaccgccaacctcggcaagcg 407 |||||||||||||||| |||||| Sbjct: 90355 ttcaccgccaacctcgacaagcg 90377
>dbj|AK107528.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-G06, full insert sequence Length = 597 Score = 113 bits (57), Expect = 5e-22 Identities = 87/97 (89%) Strand = Plus / Minus Query: 311 actcgtccgacgaggcgctgggccgatggcgcaaggtcgtcggcgtcgtcaagaacccca 370 ||||||| || |||||||| | || ||||||||| || |||||||||||||||||||| Sbjct: 294 actcgtcggaggaggcgctccggcggtggcgcaagctctgcggcgtcgtcaagaacccca 235 Query: 371 agcgccgcttccgcttcaccgccaacctcggcaagcg 407 |||||||||||||||||||||||||||||| |||||| Sbjct: 234 agcgccgcttccgcttcaccgccaacctcgacaagcg 198
>gb|AY022751.1| Oryza sativa microsatellite MRG5076 containing (CCT)X8, closest to marker G148, genomic sequence Length = 224 Score = 105 bits (53), Expect = 1e-19 Identities = 56/57 (98%) Strand = Plus / Plus Query: 351 cggcgtcgtcaagaaccccaagcgccgcttccgcttcaccgccaacctcggcaagcg 407 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 4 cggcgtcgtcaagaaccccaagcgccgcttccgcttcaccgccaacctcgacaagcg 60
>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence Length = 204120 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 353 gcgtcgtcaagaaccccaagcgccgcttccgcttcaccgccaacctcg 400 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6707 gcgtcgtcaagaaccccaagcgccgcttccgcttcaccgccaacctcg 6754
>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence Length = 103167 Score = 95.6 bits (48), Expect = 1e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 353 gcgtcgtcaagaaccccaagcgccgcttccgcttcaccgccaacctcg 400 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85964 gcgtcgtcaagaaccccaagcgccgcttccgcttcaccgccaacctcg 86011
>ref|NM_102542.1| Arabidopsis thaliana ACA1; calmodulin binding AT1G27770 (ACA1) transcript variant AT1G27770.2 mRNA, complete cds Length = 3262 Score = 46.1 bits (23), Expect = 0.092 Identities = 53/63 (84%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 148 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 207 Query: 325 gcg 327 ||| Sbjct: 208 gcg 210
>ref|NM_179385.1| Arabidopsis thaliana ACA1; calcium-transporting ATPase/ calmodulin binding AT1G27770 (ACA1) transcript variant AT1G27770.1 mRNA, complete cds Length = 3484 Score = 46.1 bits (23), Expect = 0.092 Identities = 53/63 (84%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 148 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 207 Query: 325 gcg 327 ||| Sbjct: 208 gcg 210
>ref|XM_365275.1| Magnaporthe grisea 70-15 hypothetical protein (MG01977.4) partial mRNA Length = 1536 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 296 gcgtcaagcccaagcactcgtccgacg 322 ||||||||||||||||| ||||||||| Sbjct: 317 gcgtcaagcccaagcacacgtccgacg 343
>emb|X69941.1|CHATACA1B A.thaliana chloroplast ACA1 mRNA encoding envelope Ca2+-ATPase Length = 3262 Score = 46.1 bits (23), Expect = 0.092 Identities = 53/63 (84%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 148 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 207 Query: 325 gcg 327 ||| Sbjct: 208 gcg 210
>emb|X69940.1|CHATACA1A A.thaliana chloroplast ACA1 mRNA encoding envelope Ca2+-ATPase Length = 4667 Score = 46.1 bits (23), Expect = 0.092 Identities = 53/63 (84%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 367 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 426 Query: 325 gcg 327 ||| Sbjct: 427 gcg 429
>gb|AC079280.4|AC079280 Arabidopsis thaliana chromosome 1 BAC F28L5 genomic sequence, complete sequence Length = 48404 Score = 46.1 bits (23), Expect = 0.092 Identities = 53/63 (84%) Strand = Plus / Minus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 5065 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 5006 Query: 325 gcg 327 ||| Sbjct: 5005 gcg 5003
>gb|AC012375.3|AC012375 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence Length = 106753 Score = 46.1 bits (23), Expect = 0.092 Identities = 53/63 (84%) Strand = Plus / Minus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 87993 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 87934 Query: 325 gcg 327 ||| Sbjct: 87933 gcg 87931
>dbj|D13984.1|ATHDCECAA Arabidopsis thaliana ACA1 gene for chloroplast envelope Ca2+-ATPase, complete cds Length = 4667 Score = 46.1 bits (23), Expect = 0.092 Identities = 53/63 (84%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 367 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 426 Query: 325 gcg 327 ||| Sbjct: 427 gcg 429
>dbj|D13983.1|ATHRCECAA Arabidopsis thaliana mRNA for chloroplast envelope Ca2+-ATPase, complete cds Length = 3262 Score = 46.1 bits (23), Expect = 0.092 Identities = 53/63 (84%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 148 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 207 Query: 325 gcg 327 ||| Sbjct: 208 gcg 210
>dbj|AK121511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023O13, full insert sequence Length = 2610 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 257 cgcccgccatggagagctacctcaacg 283 ||||||||| ||||||||||||||||| Sbjct: 380 cgcccgccagggagagctacctcaacg 406
>dbj|AK065165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C11, full insert sequence Length = 2692 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 257 cgcccgccatggagagctacctcaacg 283 ||||||||| ||||||||||||||||| Sbjct: 304 cgcccgccagggagagctacctcaacg 330
>gb|L08469.1|ATHARAB2TH Arabidopsis thaliana envelope Ca2+-ATPase (PEA1) gene, chloroplast gene encoding chloroplast protein, complete cds Length = 4888 Score = 46.1 bits (23), Expect = 0.092 Identities = 53/63 (84%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 366 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 425 Query: 325 gcg 327 ||| Sbjct: 426 gcg 428
>gb|L08468.1|ATHARAB1TH Arabidopsis thaliana envelope Ca2+-ATPase (PEA1) mRNA, chloroplast gene encoding chloroplast protein, complete cds Length = 3484 Score = 46.1 bits (23), Expect = 0.092 Identities = 53/63 (84%) Strand = Plus / Plus Query: 265 atggagagctacctcaacgagaacttcgggggcgtcaagcccaagcactcgtccgacgag 324 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 148 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 207 Query: 325 gcg 327 ||| Sbjct: 208 gcg 210
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127003 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 257 cgcccgccatggagagctacctcaacg 283 ||||||||| ||||||||||||||||| Sbjct: 63247 cgcccgccagggagagctacctcaacg 63221
>ref|NM_184974.1| Oryza sativa (japonica cultivar-group), mRNA Length = 801 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 aggtcgtcggcgtcgtcaagaa 365 |||||||||||||||||||||| Sbjct: 680 aggtcgtcggcgtcgtcaagaa 659
>ref|NM_183735.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1245 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 344 aggtcgtcggcgtcgtcaagaa 365 |||||||||||||||||||||| Sbjct: 554 aggtcgtcggcgtcgtcaagaa 575
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 aggtcgtcggcgtcgtcaagaa 365 |||||||||||||||||||||| Sbjct: 50775 aggtcgtcggcgtcgtcaagaa 50754
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 aggtcgtcggcgtcgtcaagaa 365 |||||||||||||||||||||| Sbjct: 11927963 aggtcgtcggcgtcgtcaagaa 11927942
>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1012D10 Length = 168267 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 aggtcgtcggcgtcgtcaagaa 365 |||||||||||||||||||||| Sbjct: 140248 aggtcgtcggcgtcgtcaagaa 140227
>emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116_G12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152862 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 aggtcgtcggcgtcgtcaagaa 365 |||||||||||||||||||||| Sbjct: 132609 aggtcgtcggcgtcgtcaagaa 132588
>ref|NM_197255.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0062C05.30), mRNA Length = 1695 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 396 cctcggcaagcgatccgaggccgcc 420 ||||||||||| ||||||||||||| Sbjct: 669 cctcggcaagccatccgaggccgcc 645
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 396 cctcggcaagcgatccgaggccgcc 420 ||||||||||| ||||||||||||| Sbjct: 145830 cctcggcaagccatccgaggccgcc 145806
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03, complete sequence Length = 121466 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 gagagctacctcaacgagaacttcg 292 |||||||||||||||||| |||||| Sbjct: 88281 gagagctacctcaacgagtacttcg 88305
>emb|AL049757.14|HSDJ47A17 Human DNA sequence from clone RP1-47A17 on chromosome 22q13.2-13.33, complete sequence Length = 105104 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 ggtggagaggagggacggcag 242 ||||||||||||||||||||| Sbjct: 67560 ggtggagaggagggacggcag 67540
>gb|DQ056263.1| Sinojackia xylocarpa clone Sx149 microsatellite sequence Length = 412 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Plus Query: 361 aagaaccccaagcgccgcttccgcttcaccgccaacctcggcaagcgatccgaggccgcc 420 ||||||||||||||| | ||||| ||||| || | ||| |||||| | |||||||||| Sbjct: 177 aagaaccccaagcgcaggttccgattcacagcagatctctccaagcgctacgaggccgcc 236 Query: 421 gccat 425 ||||| Sbjct: 237 gccat 241
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 gagcagcagggacgcccgcca 265 ||||||||||||||||||||| Sbjct: 1341676 gagcagcagggacgcccgcca 1341656
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 396 cctcggcaagcgatccgaggccgcc 420 ||||||||||| ||||||||||||| Sbjct: 26080584 cctcggcaagccatccgaggccgcc 26080560
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 396 cctcggcaagcgatccgaggccgcc 420 ||||||||||| ||||||||||||| Sbjct: 18848094 cctcggcaagccatccgaggccgcc 18848070
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ggagttggtggagaggaggga 236 ||||||||||||||||||||| Sbjct: 4977644 ggagttggtggagaggaggga 4977624
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 268 gagagctacctcaacgagaacttcg 292 |||||||||||||||||| |||||| Sbjct: 24202043 gagagctacctcaacgagtacttcg 24202067
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ggagttggtggagaggaggga 236 ||||||||||||||||||||| Sbjct: 19333 ggagttggtggagaggaggga 19313
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 396 cctcggcaagcgatccgaggccgcc 420 ||||||||||| ||||||||||||| Sbjct: 18859348 cctcggcaagccatccgaggccgcc 18859324
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence Length = 163039 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 396 cctcggcaagcgatccgaggccgcc 420 ||||||||||| ||||||||||||| Sbjct: 114911 cctcggcaagccatccgaggccgcc 114887
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tcaagcccaagcactcgtcc 318 |||||||||||||||||||| Sbjct: 1119396 tcaagcccaagcactcgtcc 1119377
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gaactcgccaccttccatga 47 |||||||||||||||||||| Sbjct: 142029 gaactcgccaccttccatga 142010
>ref|XM_981750.1| PREDICTED: Mus musculus hypothetical protein LOC544864 (LOC544864), mRNA Length = 3627 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 ggtctgaggagccgcgtgct 202 |||||||||||||||||||| Sbjct: 622 ggtctgaggagccgcgtgct 603
>ref|XM_974939.1| PREDICTED: Mus musculus hypothetical protein LOC544864 (LOC544864), mRNA Length = 3627 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 ggtctgaggagccgcgtgct 202 |||||||||||||||||||| Sbjct: 622 ggtctgaggagccgcgtgct 603
>ref|XM_571340.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNF03820) partial mRNA Length = 2379 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 tcaagcccaagcactcgtcc 318 |||||||||||||||||||| Sbjct: 1537 tcaagcccaagcactcgtcc 1556
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cgtccgacgaggcgctgggc 333 |||||||||||||||||||| Sbjct: 2600865 cgtccgacgaggcgctgggc 2600846
>emb|AL662806.20| Mouse DNA sequence from clone RP23-273O7 on chromosome 11 Contains the 5' end of the Cyfip2 gene for cytoplasmic FMR1 interacting protein 2, the Itk gene for IL2-inducible T-cell kinase, two novel genes and a CpG island, complete sequence Length = 161754 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 232 agggacggcagggg-agcagcagggacg 258 |||||||||||||| ||||||||||||| Sbjct: 142411 agggacggcaggggcagcagcagggacg 142438 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 232 agggacggcagggg-agcagcagggacg 258 |||||||||||||| ||||||||||||| Sbjct: 142390 agggacggcaggggcagcagcagggacg 142417 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 232 agggacggcagggg-agcagcagggacg 258 |||||||||||||| ||||||||||||| Sbjct: 142315 agggacggcaggggcagcagcagggacg 142342 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 232 agggacggcagggg-agcagcagggacg 258 |||||||||||||| ||||||||||||| Sbjct: 142294 agggacggcaggggcagcagcagggacg 142321
>emb|CR547127.14| Mouse DNA sequence from clone CH25-592M6 on chromosome X, complete sequence Length = 72790 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 gacgcccgccatggagagct 274 |||||||||||||||||||| Sbjct: 69599 gacgcccgccatggagagct 69580
>emb|CR548624.2| Mouse DNA sequence from clone CH25-423E5 on chromosome X, complete sequence Length = 30460 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 gacgcccgccatggagagct 274 |||||||||||||||||||| Sbjct: 27304 gacgcccgccatggagagct 27285
>dbj|AK172326.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830201G14 product:E3 ligase for inhibin receptor homolog [Homo sapiens], full insert sequence Length = 2282 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ggtctgaggagccgcgtgct 202 |||||||||||||||||||| Sbjct: 86 ggtctgaggagccgcgtgct 105
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 aggtcgtcggcgtcgtcaag 363 |||||||||||||||||||| Sbjct: 1460273 aggtcgtcggcgtcgtcaag 1460292
>gb|AC157213.2| Mus musculus BAC clone RP23-157N5 from chromosome 12, complete sequence Length = 211304 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ggtctgaggagccgcgtgct 202 |||||||||||||||||||| Sbjct: 133485 ggtctgaggagccgcgtgct 133504
>ref|NM_001013783.1| Mus musculus similar to Hypothetical protein MGC26988 (LOC432552), mRNA Length = 2185 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 232 agggacggcagggg-agcagcagggacg 258 |||||||||||||| ||||||||||||| Sbjct: 970 agggacggcaggggcagcagcagggacg 997 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 232 agggacggcagggg-agcagcagggacg 258 |||||||||||||| ||||||||||||| Sbjct: 949 agggacggcaggggcagcagcagggacg 976 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 232 agggacggcagggg-agcagcagggacg 258 |||||||||||||| ||||||||||||| Sbjct: 874 agggacggcaggggcagcagcagggacg 901 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 232 agggacggcagggg-agcagcagggacg 258 |||||||||||||| ||||||||||||| Sbjct: 853 agggacggcaggggcagcagcagggacg 880
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 agaataccgccacttccatg 87 |||||||||||||||||||| Sbjct: 1517330 agaataccgccacttccatg 1517349
>gb|AF061245.1|AF061245 Sinorhizobium fredii glucosyl transferase ExoA (exoA) and ExoM (exoM) genes, complete cds; and glucosyl transferase ExoO (exoO) gene, partial cds Length = 2906 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 ccaagcgccgcttccgcttc 387 |||||||||||||||||||| Sbjct: 1693 ccaagcgccgcttccgcttc 1712 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,371,916 Number of Sequences: 3902068 Number of extensions: 2371916 Number of successful extensions: 45998 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 45358 Number of HSP's gapped (non-prelim): 644 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
