Clone Information

BLAST Search Result

Clone Name	bastl56a11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	J1L_HCMVA (P17143) Hypothetical protein J1L	33	0.22
2	V70K_TYMVA (P20131) 69 kDa protein	32	0.49
3	DOT1L_HUMAN (Q8TEK3) Histone-lysine N-methyltransferase, H3 lysi...	31	0.84
4	YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon ...	30	1.1
5	KCNH2_RABIT (Q8WNY2) Potassium voltage-gated channel subfamily H...	30	1.1
6	KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H...	30	1.1
7	DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-re...	30	1.1
8	APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa...	30	1.4
9	APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa...	30	1.4
10	LRP8_CHICK (Q98931) Low-density lipoprotein receptor-related pro...	30	1.9
11	VSX1_HUMAN (Q9NZR4) Visual system homeobox 1 (Transcription fact...	30	1.9
12	POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)	30	1.9
13	ESX1L_HUMAN (Q8N693) Extraembryonic, spermatogenesis, homeobox 1...	29	2.4
14	DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re...	29	2.4
15	CLCN2_HUMAN (P51788) Chloride channel protein 2 (ClC-2)	29	2.4
16	YJX4_SCHPO (Q9UU99) Protein C23B6.04c in chromosome III	29	2.4
17	PHC1_HUMAN (P78364) Polyhomeotic-like protein 1 (hPH1) (Early de...	29	3.2
18	YOFA_CAEEL (Q09337) Hypothetical protein ZK1290.10 precursor	29	3.2
19	Y966_TREPA (O83932) Hypothetical protein TP0966 precursor	29	3.2
20	VP61_NPVOP (O10270) 61 kDa protein homolog	29	3.2
21	KCNH2_CANFA (Q9TSZ3) Potassium voltage-gated channel subfamily H...	29	3.2
22	BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-assoc...	28	4.2
23	IF2_GLOVI (Q7NH85) Translation initiation factor IF-2	28	4.2
24	CELR3_RAT (O88278) Cadherin EGF LAG seven-pass G-type receptor 3...	28	4.2
25	ADA1D_MOUSE (P97714) Alpha-1D adrenergic receptor (Alpha 1D-adre...	28	4.2
26	RL22_METKA (Q8TX36) 50S ribosomal protein L22P	28	4.2
27	PLS3_MOUSE (Q9JIZ9) Phospholipid scramblase 3 (PL scramblase 3) ...	28	4.2
28	MILK2_HUMAN (Q8IY33) MICAL-like protein 2	28	4.2
29	ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic round...	28	5.4
30	EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)	28	5.4
31	BC11B_MOUSE (Q99PV8) B-cell lymphoma/leukemia 11B (B-cell CLL/ly...	28	5.4
32	CN065_HUMAN (Q8N9R9) Protein C14orf65	28	5.4
33	RNB_HHV1M (P56958) RNA-binding protein (Vmw21)	28	5.4
34	PCD15_HUMAN (Q96QU1) Protocadherin-15 precursor	28	5.4
35	Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 in...	28	7.1
36	PCDAB_PANTR (Q5DRF3) Protocadherin alpha 11 precursor (PCDH-alph...	28	7.1
37	PCDAB_HUMAN (Q9Y5I1) Protocadherin alpha 11 precursor (PCDH-alph...	28	7.1
38	GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor (H...	28	7.1
39	RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40	28	7.1
40	POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2...	28	7.1
41	ACROL_HUMAN (P58840) Hypothetical acrosin-like protease (EC 3.4....	28	7.1
42	CELR1_HUMAN (Q9NYQ6) Cadherin EGF LAG seven-pass G-type receptor...	28	7.1
43	YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear pro...	28	7.1
44	ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi...	28	7.1
45	HME1_MOUSE (P09065) Homeobox protein engrailed-1 (Mo-En-1)	28	7.1
46	POL_RSFFV (P03358) Pol polyprotein [Contains: Reverse transcript...	27	9.3
47	CLCN2_RAT (P35525) Chloride channel protein 2 (ClC-2)	27	9.3
48	CLCN2_MOUSE (Q9R0A1) Chloride channel protein 2 (ClC-2)	27	9.3
49	CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor...	27	9.3
50	V70K_TYMVC (P28478) 69 kDa protein	27	9.3
51	V70K_TYMV (P10357) 69 kDa protein	27	9.3
52	MAST1_HUMAN (Q9Y2H9) Microtubule-associated serine/threonine-pro...	27	9.3
53	ICP4_GAHVG (Q02362) Trans-acting transcriptional activator prote...	27	9.3
54	CT012_HUMAN (Q9NVP4) Protein C20orf12	27	9.3
55	ABI2_MOUSE (P62484) Abl interactor 2 (Abelson interactor 2) (Abi-2)	27	9.3
56	ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein ...	27	9.3

>J1L_HCMVA (P17143) Hypothetical protein J1L|
          Length = 309

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = +3

Query: 9   VGRLARIPPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPA 158
           VG L R     AA+C  P   LP+  R  P  A PPSP    +  PP  A
Sbjct: 4   VGSLVR-----AANCPRPQRNLPYAARTAPAPAQPPSPAPTPSRTPPVSA 48

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>V70K_TYMVA (P20131) 69 kDa protein|
          Length = 628

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 54  ALPLAGLPFFPRRLP*DAAPP-SPLVNLAALPPSPAFRPP 170
           ALP  G P  PRRLP  A PP SPL +L   P  P   PP
Sbjct: 429 ALPKEGPPPPPRRLPSPATPPQSPLRDLGRTPSFPT--PP 466

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>DOT1L_HUMAN (Q8TEK3) Histone-lysine N-methyltransferase, H3 lysine-79 specific|
            (EC 2.1.1.43) (Histone H3-K79 methyltransferase)
            (H3-K79-HMTase) (DOT1-like protein)
          Length = 1739

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +3

Query: 6    PVGRLARIP--PTVAASCALPLAGLPFFPRRLP*DAAPPSP--LVNLAALPPSPAFRPP 170
            P   L R P  P V  +   P A LP  P  L   A+ P P  L +LA+LPP+ AF PP
Sbjct: 1605 PPAHLGRSPAGPPVLHAPPPPNAALPPPPTLL---ASNPEPALLQSLASLPPNQAFLPP 1660

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>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556|
          Length = 348

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 12  GRLARIPPTVAASCALPLAGLPFFPR--RLP*DAAPPSPLVNLA-ALPPSPAFRPP 170
           G L   P   A+S + P A  P  P   RLP    P +P  +   A PP PA RPP
Sbjct: 229 GSLLPAPRPPASSASSPQAAAPAAPSATRLPRRTTPSAPRPSSRPARPPIPAARPP 284

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>KCNH2_RABIT (Q8WNY2) Potassium voltage-gated channel subfamily H member 2|
            (Voltage-gated potassium channel subunit Kv11.1)
            (Ether-a-go-go-related gene potassium channel 1) (ERG1)
            (RERG) (ra-erg) (Ether-a-go-go-related protein 1)
            (Eag-related protein 1)
          Length = 1161

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 25   GSHPLSQPRAPFPWRVSPSSRVAS-HKTQHRRPRSSTSPLCRPRPHSGPR 171
            G+ P S+ R   PW  SPSS  +S   ++   P  S+SPL R  P S PR
Sbjct: 916  GAGPSSRGRPGGPWGESPSSGPSSPESSEDEGPGRSSSPL-RLVPFSSPR 964

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>KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H member 2|
            (Voltage-gated potassium channel subunit Kv11.1)
            (Ether-a-go-go related gene potassium channel 1) (H-ERG)
            (Erg1) (Ether-a-go-go related protein 1) (Eag-related
            protein 1) (eag homo
          Length = 1159

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 25   GSHPLSQPRAPFPWRVSPSSRVAS-HKTQHRRPRSSTSPLCRPRPHSGPR 171
            G+ P S+ R   PW  SPSS  +S   ++   P  S+SPL R  P S PR
Sbjct: 914  GAGPSSRGRPGGPWGESPSSGPSSPESSEDEGPGRSSSPL-RLVPFSSPR 962

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>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +3

Query: 6   PVGRLARIPPTVAASCALPLAGLPFF-----PRRLP*DAA--PPSPLVNLAALPPSP 155
           P G +   PP    +C  P   LP       P +LP  AA  PP PL  +A++PP P
Sbjct: 595 PGGVVPPSPPLPPGTCIPPPPPLPGGACIPPPPQLPGSAAIPPPPPLPGVASIPPPP 651



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
 Frame = +3

Query: 6   PVGRLARIPPTVAASCALP----LAGLPFFPRRLP*DAA----PPSPLVNLAALPPSP 155
           P G     PP +  S A+P    L G+   P   P   A    PP PL    A+PP P
Sbjct: 618 PGGACIPPPPQLPGSAAIPPPPPLPGVASIPPPPPLPGATAIPPPPPLPGATAIPPPP 675

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>APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa precursor|
           (45/47 kDa antigen) (Fibronectin attachment protein)
           (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa
           glycoprotein) (FAP-B)
          Length = 325

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = +3

Query: 12  GRLARIPPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPP 170
           GRLA +     AS +L    +P      P + APP P    AA PPS A  PP
Sbjct: 13  GRLAALAIAAMASASLVTVAVPATANADP-EPAPPVPTT--AASPPSTAAAPP 62

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>APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa precursor|
           (Fibronectin attachment protein) (45/47 kDa antigen)
           (FAP-B)
          Length = 325

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = +3

Query: 12  GRLARIPPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPP 170
           GRLA +     AS +L    +P      P + APP P    AA PPS A  PP
Sbjct: 13  GRLAALAIAAMASASLVTVAVPATANADP-EPAPPVPTT--AASPPSTAAAPP 62

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>LRP8_CHICK (Q98931) Low-density lipoprotein receptor-related protein 8|
           precursor (Apolipoprotein E receptor 2) (LR8B protein)
          Length = 917

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 31  HPLSQPRAPFPWRVSPSSRVASHKTQHRRPRSSTSPLCRPRPHSGPR 171
           H L QP+AP    +SP            +P      LC P PH  PR
Sbjct: 693 HELKQPKAPDSCELSP------------QPNGGCEYLCLPAPHISPR 727

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>VSX1_HUMAN (Q9NZR4) Visual system homeobox 1 (Transcription factor VSX1)|
           (Retinal inner nuclear layer homeobox protein)
           (Homeodomain protein RINX)
          Length = 365

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 30  PPTVAASCALPLAGLPFFPRRLP*DAAPPSP 122
           PP  A +  L LA +PF P R P  AAP +P
Sbjct: 92  PPAAARAPCLLLADVPFLPPRGPEPAAPLAP 122

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>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 34  PLSQPRAPFPWRVSPSSRVASHKTQHRRPRSSTSPLCRPRP 156
           P +QP  P PW    S+ ++S      +P  S++PL  P P
Sbjct: 574 PPTQPPQPQPWEEIISTFLSSLNASSHKPSPSSAPLESPSP 614

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>ESX1L_HUMAN (Q8N693) Extraembryonic, spermatogenesis, homeobox 1-like protein|
          Length = 406

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +3

Query: 6   PVGRLARIPPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRP 167
           P+ R+   PP        P+A LP  P   P    PP     +A LPP P   P
Sbjct: 317 PMARVPPGPPMARVPPGPPMAPLPPGPPMAPLPPGPP-----MAPLPPGPPMAP 365

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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 6   PVGRLARIPPTVAASCALP-LAGLPFFPRRLP*DAA---PPSPLVNLAALPPSPAF 161
           P+   ARIPP       LP  AG+P  P  LP +A    PP PL     +PP P F
Sbjct: 659 PLPGSARIPPPPPP---LPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPF 711

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>CLCN2_HUMAN (P51788) Chloride channel protein 2 (ClC-2)|
          Length = 898

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 55  PFPWRVSPSSRVASHKTQHRRPRSSTSPLCRPRPH 159
           P PW+  PSSR A    ++ R R +   +C  R H
Sbjct: 46  PEPWKGPPSSRAAPELLEYGRSRCARCRVCSVRCH 80

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>YJX4_SCHPO (Q9UU99) Protein C23B6.04c in chromosome III|
          Length = 1008

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +1

Query: 16  DSRGSHPLSQPRAPFPWRVSPSSRVASHKTQHRRPR----SSTSPLCRPRPHS 162
           +S   HP SQ  +      S +S V + +TQ   PR    ++TSP   P PHS
Sbjct: 393 ESGSDHPSSQDNS------SKASLVENSQTQSSTPRKPLPTTTSPKVNPEPHS 439

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>PHC1_HUMAN (P78364) Polyhomeotic-like protein 1 (hPH1) (Early development|
           regulatory protein 1)
          Length = 1004

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 24  RIPPTVAASCALPLAGLPFF---PRRLP*DAAPPSPLVNLAALPPSPAFRPPDL 176
           ++PP+ +   A  L   P     P  LP DAAP  P + + + PP    +PP L
Sbjct: 458 QVPPSQSQQQAQTLVVQPMLQSSPLSLPPDAAPKPP-IPIQSKPPVAPIKPPQL 510

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>YOFA_CAEEL (Q09337) Hypothetical protein ZK1290.10 precursor|
          Length = 412

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 24  RIPPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPP 170
           R+  T+    ALP+ GLP        +  PP+ L +L A PPS    PP
Sbjct: 59  RLDNTIPVPPALPI-GLPIIQITTK-EPQPPASLTSLPAAPPSAQVAPP 105

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>Y966_TREPA (O83932) Hypothetical protein TP0966 precursor|
          Length = 544

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 12  GRLARIPPTVAAS-CALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSP 155
           G LA + P V A   A+P  G P  P     +A PP+P        PSP
Sbjct: 23  GALAALVPAVGAQEQAVPAPGTPAPPAHTASEAVPPAPEPRAEGEQPSP 71

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>VP61_NPVOP (O10270) 61 kDa protein homolog|
          Length = 474

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 33  PTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLA-ALPPSPAFRPPDLD 179
           P+   + ++P    PF    +     PP P+V+LA ++PP P   PP +D
Sbjct: 273 PSADVTTSMPPPPPPFPSADVTTSMPPPPPMVDLATSMPPPPPPPPPMVD 322

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>KCNH2_CANFA (Q9TSZ3) Potassium voltage-gated channel subfamily H member 2|
            (Voltage-gated potassium channel subunit Kv11.1)
            (Ether-a-go-go-related gene potassium channel 1) (ERG1)
            (c-erg) (DERG) (Ether-a-go-go-related protein 1)
            (Eag-related protein 1)
          Length = 1158

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 25   GSHPLSQPRAPFPWRVSPSSRVAS-HKTQHRRPRSSTSPLCRPRPHSGPR 171
            G+ P  + R   PW  SPSS  +S   ++   P  S+SPL R  P S PR
Sbjct: 913  GAGPSGRGRPGGPWGESPSSGPSSPESSEDEGPGRSSSPL-RLVPFSSPR 961

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>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2158

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 30  PPTVAASCALPLAGLPFFPRRLP*-DAAPPSPLVNLAALPPSPAFRPP 170
           PP   A+ ALP    P  P+ +P   A PP+P       P  PA  PP
Sbjct: 509 PPVTPAAPALP----PVVPKEIPAAPALPPTPTPTPEKEPEEPAQAPP 552

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>IF2_GLOVI (Q7NH85) Translation initiation factor IF-2|
          Length = 925

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = +1

Query: 34  PLSQPRAPFPWRVSPSSRVASHKT-----QHRRPRSSTSPLCRPRPHSGPRIS 177
           P+  P  P P + +P+   A   T     + RRP+    P  RP    GP I+
Sbjct: 217 PVRPPAPPAPAKPTPAPAPAPRPTAEQPSEPRRPQPPAQPPSRPEKRGGPLIA 269

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>CELR3_RAT (O88278) Cadherin EGF LAG seven-pass G-type receptor 3 precursor|
            (Multiple epidermal growth factor-like domains 2)
          Length = 3313

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 137  RFAALARIPAPGSRCGRLPDAATMSACDDDHASL 238
            +F  LA +P P    G     A +  CD+DH  L
Sbjct: 2134 KFGVLATVPCPRGALGLRGTGAAVRLCDEDHGWL 2167

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>ADA1D_MOUSE (P97714) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor)|
           (Alpha 1D-adrenoreceptor) (Alpha-1A adrenergic receptor)
          Length = 562

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 109 HRRPRSSTSPLCRPRP 156
           HR PR S SP C PRP
Sbjct: 447 HRTPRGSPSPHCTPRP 462

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>RL22_METKA (Q8TX36) 50S ribosomal protein L22P|
          Length = 159

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
 Frame = +2

Query: 2   ATCRSTRADPTHCRSL---VRXXXXXXXXXXXXXXIRRSTAVPARQPRRFAALARIPAPG 172
           A  R  R  P H R +   +R              IR+  AVP R+ ++     R   PG
Sbjct: 24  AFIRELRISPKHAREICRAIRGMPLDRAKEFLRRVIRKEEAVPFRKHKKKVPHRRQIRPG 83

Query: 173 SRCGRLPDAA 202
              GR P+ A
Sbjct: 84  WDAGRFPEKA 93

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>PLS3_MOUSE (Q9JIZ9) Phospholipid scramblase 3 (PL scramblase 3)|
           (Ca(2+)-dependent phospholipid scramblase 3)
          Length = 296

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +3

Query: 21  ARIPPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAF 161
           A +P  V A    P  G   FP   P    PP+P V L  +PP   F
Sbjct: 37  APVPTQVPA----PAPGFALFPSPGPVAPGPPAPFVPLPGVPPGLEF 79

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>MILK2_HUMAN (Q8IY33) MICAL-like protein 2|
          Length = 904

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 37  LSQPRAPFPWRVSPSSRVASHKTQHRRPRSSTSPLCRPRPHSGPRI 174
           L +  AP P R SP++  A   +Q +      SPL +P   S PR+
Sbjct: 463 LEEAGAPAPGRPSPAT-AAVPSSQPKTEAPQASPLAKPLQSSSPRV 507

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>ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic roundabout)|
          Length = 1007

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 34  PLSQPRAPFPWRVSPSSRVASHKTQHRRPRSSTSPLCRPRPHSGPRISM 180
           P S P  P P +V    R+     Q   P SS+  LC  R  S PR+S+
Sbjct: 590 PSSTPARPSP-QVPAVRRLPPQLAQLSSPCSSSDSLCSRRGLSSPRLSL 637

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>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 21  ARIPPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPP 170
           A  PPT   S   P    P +P   P    PP+P V   + P  P  +PP
Sbjct: 111 ASTPPTYTPSPKPPATKPPTYPTPKPPATKPPTPPVYTPS-PKPPVTKPP 159

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>BC11B_MOUSE (Q99PV8) B-cell lymphoma/leukemia 11B (B-cell CLL/lymphoma 11B)|
           (Radiation-induced tumor suppressor gene 1 protein)
           (mRit1) (COUP-TF-interacting protein 2)
          Length = 884

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 30  PPTVAASCALPLAGL--PFFPRRLP*DAAPPSPLVNLAALPPSPAFRPP 170
           PP V+     P+  L  PF P       +P SP ++   LPP PA  PP
Sbjct: 377 PPPVSPGRGNPMHRLLNPFQP-------SPKSPFLSTPPLPPMPAGTPP 418

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>CN065_HUMAN (Q8N9R9) Protein C14orf65|
          Length = 162

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +1

Query: 28  SHPLSQPRAPFPWRVSPSSRVAS----HKTQHRRPRSSTSPLCRPRPHS 162
           SHP+  P AP  WR SPS  V++    H  Q      S+ P+   RP S
Sbjct: 113 SHPM--PAAPCFWRSSPSPPVSAMSPCHPVQAMPFLGSSCPMPEARPFS 159

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>RNB_HHV1M (P56958) RNA-binding protein (Vmw21)|
          Length = 161

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +1

Query: 16  DSRGSHPLSQPRAPFPWRVSPSSRVASHKTQHRRPRSSTSPLC--RPRPHSGPR 171
           + R   P  +PR P   R S   RV       R+PRS   P     PRP   PR
Sbjct: 93  EPRVPRPPREPREPRVPRASRDPRVPRDPRDPRQPRSPREPRSPREPRPPREPR 146

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>PCD15_HUMAN (Q96QU1) Protocadherin-15 precursor|
          Length = 1955

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = +3

Query: 30   PPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPP 170
            PP    S  LPL    FFP  +     P  PL     LPP P   PP
Sbjct: 1779 PPPSPPSIPLPLPPPTFFPLSVSTSGPPTPPL-----LPPFPTPLPP 1820

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>Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 intergenic|
           region
          Length = 224

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 30  PPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPP 170
           PP V    + P+  LP  P   P   +PPSP      +PP+P   PP
Sbjct: 37  PPIVPPPTSPPIVPLPT-PPPTP-TPSPPSPTPPPTPIPPTPTPTPP 81

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>PCDAB_PANTR (Q5DRF3) Protocadherin alpha 11 precursor (PCDH-alpha11)|
          Length = 949

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 25  GSHPLSQPRAPFP-WRVSPSSRVASHKTQH 111
           GS+   QPR P P WR S S R   H + H
Sbjct: 791 GSNHPGQPRQPNPDWRYSASLRAGMHSSVH 820

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>PCDAB_HUMAN (Q9Y5I1) Protocadherin alpha 11 precursor (PCDH-alpha11)|
          Length = 949

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 25  GSHPLSQPRAPFP-WRVSPSSRVASHKTQH 111
           GS+   QPR P P WR S S R   H + H
Sbjct: 791 GSNHPGQPRQPNPDWRYSASLRAGMHSSVH 820

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>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 30  PPTVAA-SCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPP 170
           PP+ A  S + P    P  P   P   APPSP       PPSP   PP
Sbjct: 228 PPSPAPPSPSPPAPPSPVPPSPAPPSPAPPSPKPPAPPPPPSPPPPPP 275



 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/46 (41%), Positives = 19/46 (41%)
 Frame = +3

Query: 33  PTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPP 170
           P V  S A P    P  P   P   APP P       PPSPA  PP
Sbjct: 183 PPVPPSPAPPSPAPPVPPSPAPPSPAPPVPPSPAPPSPPSPA--PP 226

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>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40|
          Length = 350

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 134 EVDERGRRCCVLWEATREEGETRQGKGARGCDSGWDPRES 15
           E   +GRR  V W  +   G+ R G G+R   S   P ++
Sbjct: 59  EFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKT 98

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>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse|
            transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
            (RT); Integrase (IN)]
          Length = 1196

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 37   LSQPRAPFPWRVSPSSRVASHKTQHRRPR 123
            L QP  P P+R+  S  V  H+T++  PR
Sbjct: 1109 LDQPVIPHPFRIGDSVWVRRHQTKNLEPR 1137

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>ACROL_HUMAN (P58840) Hypothetical acrosin-like protease (EC 3.4.21.-)|
           (Fragment)
          Length = 232

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +1

Query: 28  SHPLSQPRAPFPWRVSPSSRVASHKTQHRRPRSSTSPLCRPRPHSGP 168
           SHPLS   A  PW   P  R    +    +PR   SP   P P   P
Sbjct: 128 SHPLS---AHLPWYFQPPPRPLPPRPPAAQPRPPPSPPPPPPPPPSP 171

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>CELR1_HUMAN (Q9NYQ6) Cadherin EGF LAG seven-pass G-type receptor 1 precursor|
            (Flamingo homolog 2) (hFmi2)
          Length = 3014

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 134  EVDERGRRCCVLWEATREEGETRQGKGARGCD 39
            EV+ER +  CV W  +   G T  G  ARGC+
Sbjct: 2402 EVEERTKPVCVFWNHSLAVGGT-GGWSARGCE 2432

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>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 27  IPPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPPDL 176
           +PP +  S   P    P  P  LP    PP    +L++ PP P   PP L
Sbjct: 511 MPPALPTSIPPPGMPPPVMPPSLPTSVPPPGMPPSLSSGPP-PVLPPPAL 559

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>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)|
           (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1)
           (ArgBP1)
          Length = 513

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 24  RIPPTVAASCALP--LAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPPDLD 179
           R PP++ +  +L   + G PF+ +    D  PP P V       SP   PP  D
Sbjct: 372 RRPPSITSQTSLQNQMNGGPFYSQNPVSDTPPPPPPVEEPVFDESPPPPPPPED 425

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>HME1_MOUSE (P09065) Homeobox protein engrailed-1 (Mo-En-1)|
          Length = 401

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
 Frame = +3

Query: 6   PVGRLARIPPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALP---PSPA 158
           PV      P   AA C  PLA  P  P   P    PP P     A P   P PA
Sbjct: 47  PVSPQPAPPSPPAAPCLPPLAHHPHLPPHPPPPPPPPPPPPQHLAAPAHQPQPA 100

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>POL_RSFFV (P03358) Pol polyprotein [Contains: Reverse transcriptase (EC|
           2.7.7.49)] (Fragment)
          Length = 116

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 31  HPLSQPRAPFPWRVSPSSRVASHKTQHRRPR 123
           H L +P  P P+R+  +  V  H+T + +PR
Sbjct: 23  HQLDRPIVPHPFRLGDTVWVRRHQTNNLQPR 53

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>CLCN2_RAT (P35525) Chloride channel protein 2 (ClC-2)|
          Length = 907

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 55  PFPWRVSPSSRVASHKTQHRRPRSSTSPLCRPRPH 159
           P PW+ SPS+R      ++ + R +   +C  R H
Sbjct: 52  PEPWKGSPSARATPELLEYGQSRCARCRICSVRCH 86

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>CLCN2_MOUSE (Q9R0A1) Chloride channel protein 2 (ClC-2)|
          Length = 908

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 55  PFPWRVSPSSRVASHKTQHRRPRSSTSPLCRPRPH 159
           P PW+ SPS+R      ++ + R +   +C  R H
Sbjct: 54  PEPWKGSPSARATPELLEYGQSRCARCRICSVRCH 88

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>CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor 1 precursor|
          Length = 3034

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 134  EVDERGRRCCVLWEATREEGETRQGKGARGCD 39
            E +ER +  CV W  + + G T  G  A+GC+
Sbjct: 2417 ETEERSKPVCVFWNHSLDTGGT-GGWSAKGCE 2447

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>V70K_TYMVC (P28478) 69 kDa protein|
          Length = 628

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 54  ALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPP 170
           ALP  G P  PRRLP  +  P P + L  L  +P F  P
Sbjct: 429 ALPKEGAPPPPRRLP--SPAPHPQLPLRDLGRTPGFPTP 465

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>V70K_TYMV (P10357) 69 kDa protein|
          Length = 628

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 54  ALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPP 170
           ALP  G P  PRRLP  +  P P + L  L  +P F  P
Sbjct: 429 ALPKEGAPPPPRRLP--SPAPRPQLPLRDLGRTPGFPTP 465

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>MAST1_HUMAN (Q9Y2H9) Microtubule-associated serine/threonine-protein kinase 1 (EC|
            2.7.11.1) (Syntrophin-associated serine/threonine-protein
            kinase)
          Length = 1570

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 10   SVDSRGSHPLSQPRAPFPWRVSPSSRVAS 96
            +VD  GS PL+ P +P     +PSSR +S
Sbjct: 924  AVDPHGSSPLASPMSPRSLSSNPSSRDSS 952

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>ICP4_GAHVG (Q02362) Trans-acting transcriptional activator protein ICP4|
           (Immediate-early protein IE175)
          Length = 1415

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
 Frame = +1

Query: 4   NLSVDSRGSHPLSQPRAPF------PWRVSPSSRVASHKTQHRRPRSSTSPLCRPRPHSG 165
           N S D R S P S P+  F      P    P     S       P +++SP   PRP  G
Sbjct: 66  NPSTDWRPSPPRSGPKKDFCGDLPAPLTSGPRLTTPSSGRMSELPHTTSSPRSSPRPR-G 124

Query: 166 PRIS 177
           P  S
Sbjct: 125 PETS 128

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>CT012_HUMAN (Q9NVP4) Protein C20orf12|
          Length = 579

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 104 RSTAVPARQPRRFAALARIPAPGSRCGRLPDAATMS 211
           RS A+ A +PR F+    IP P S  G   D  T +
Sbjct: 227 RSLALAAEEPRPFSESLNIPLPRSDVGTKRDIGTQT 262

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>ABI2_MOUSE (P62484) Abl interactor 2 (Abelson interactor 2) (Abi-2)|
          Length = 446

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 24  RIPPTVAASCALP--LAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRPPDLD 179
           R PP++ +  +L   + G PF+ +    D  PP P V       SP   PP  D
Sbjct: 305 RRPPSITSQTSLQNQMNGGPFYNQNPVSDTPPPPPPVEEPVFDESPPPPPPPED 358

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>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 6    PVGRLARIPPTVAASCALPLAGLPFFPRRLP*DAAPPSPLVNLAALPPSPAFRP 167
            P   L  +P T   S  LP +GLP  P       + P+P     A+ P P  +P
Sbjct: 3155 PKPNLMGLPSTTVPSPGLPTSGLPNKPSSA--SLSSPTPAQATMAMAPQPPPQP 3206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.129    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,766,766
Number of Sequences: 219361
Number of extensions: 506375
Number of successful extensions: 2897
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 2512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2835
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result