ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl56a10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191406.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2691 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 384 ttcgttccgcgggacgacatcctgctcgactgcggcgc 421 ||||| |||||||||||||||||||||||||||||||| Sbjct: 130 ttcgtgccgcgggacgacatcctgctcgactgcggcgc 167
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 384 ttcgttccgcgggacgacatcctgctcgactgcggcgc 421 ||||| |||||||||||||||||||||||||||||||| Sbjct: 32455493 ttcgtgccgcgggacgacatcctgctcgactgcggcgc 32455530
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 384 ttcgttccgcgggacgacatcctgctcgactgcggcgc 421 ||||| |||||||||||||||||||||||||||||||| Sbjct: 43014 ttcgtgccgcgggacgacatcctgctcgactgcggcgc 43051
>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1143G03 Length = 137770 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 384 ttcgttccgcgggacgacatcctgctcgactgcggcgc 421 ||||| |||||||||||||||||||||||||||||||| Sbjct: 134990 ttcgtgccgcgggacgacatcctgctcgactgcggcgc 135027
>dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064M23, full insert sequence Length = 3155 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 384 ttcgttccgcgggacgacatcctgctcgactgcggcgc 421 ||||| |||||||||||||||||||||||||||||||| Sbjct: 360 ttcgtgccgcgggacgacatcctgctcgactgcggcgc 397
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 384 ttcgttccgcgggacgacatcctgctcgactgcggcgc 421 ||||| ||||||||| |||||||||||||||||||||| Sbjct: 12282124 ttcgtgccgcgggacaacatcctgctcgactgcggcgc 12282161 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 24 gcggagtaggtcgccgttgccgttgctgg 52 ||||||||||||||||||||||||||||| Sbjct: 12281659 gcggagtaggtcgccgttgccgttgctgg 12281687 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 atgggcgatctgtgagccgcg 252 ||||||||||||||||||||| Sbjct: 12281945 atgggcgatctgtgagccgcg 12281965
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 384 ttcgttccgcgggacgacatcctgctcgactgcggcgc 421 ||||| ||||||||| |||||||||||||||||||||| Sbjct: 12278887 ttcgtgccgcgggacaacatcctgctcgactgcggcgc 12278924 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 24 gcggagtaggtcgccgttgccgttgctgg 52 ||||||||||||||||||||||||||||| Sbjct: 12278422 gcggagtaggtcgccgttgccgttgctgg 12278450 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 atgggcgatctgtgagccgcg 252 ||||||||||||||||||||| Sbjct: 12278708 atgggcgatctgtgagccgcg 12278728
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 384 ttcgttccgcgggacgacatcctgctcgactgcggcgc 421 ||||| ||||||||| |||||||||||||||||||||| Sbjct: 51657 ttcgtgccgcgggacaacatcctgctcgactgcggcgc 51694 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 24 gcggagtaggtcgccgttgccgttgctgg 52 ||||||||||||||||||||||||||||| Sbjct: 51192 gcggagtaggtcgccgttgccgttgctgg 51220 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 atgggcgatctgtgagccgcg 252 ||||||||||||||||||||| Sbjct: 51478 atgggcgatctgtgagccgcg 51498
>dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full insert sequence Length = 3171 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 384 ttcgttccgcgggacgacatcctgctcgactgcggcgc 421 ||||| ||||||||| |||||||||||||||||||||| Sbjct: 363 ttcgtgccgcgggacaacatcctgctcgactgcggcgc 400 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 atgggcgatctgtgagccgcg 252 ||||||||||||||||||||| Sbjct: 184 atgggcgatctgtgagccgcg 204
>gb|AC107611.6| Rattus norvegicus 10 BAC CH230-195I24 (Children's Hospital Oakland Research Institute) complete sequence Length = 211076 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Plus Query: 90 ctctctccccttcctttcttccct 113 |||||||||||||||||||||||| Sbjct: 125200 ctctctccccttcctttcttccct 125223
>gb|AC148187.3| Saimiri boliviensis boliviensis clone CH254-373M5, complete sequence Length = 180635 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 90 ctctctccccttcctttcttccct 113 |||||||||||||||||||||||| Sbjct: 126457 ctctctccccttcctttcttccct 126434
>gb|AC092140.4| Homo sapiens chromosome 16 clone RP11-413H22, complete sequence Length = 193188 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 89 cctctctccccttcctttcttcc 111 ||||||||||||||||||||||| Sbjct: 22903 cctctctccccttcctttcttcc 22881
>emb|BX647286.1|HSM807430 Homo sapiens genomic DNA; cDNA DKFZp686M0993 (from clone DKFZp686M0993) Length = 7315 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 tctccccttcctttcttccctga 115 ||||||||||||||||||||||| Sbjct: 1212 tctccccttcctttcttccctga 1234
>gb|AC104008.4| Homo sapiens chromosome 8, clone RP11-192I2, complete sequence Length = 129898 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 tctccccttcctttcttccctga 115 ||||||||||||||||||||||| Sbjct: 52833 tctccccttcctttcttccctga 52855
>gb|AC115836.5| Homo sapiens chromosome 8, clone RP11-1069E10, complete sequence Length = 107374 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 tctccccttcctttcttccctga 115 ||||||||||||||||||||||| Sbjct: 411 tctccccttcctttcttccctga 433
>gb|AC022161.8| Homo sapiens chromosome 16 clone RP11-273P11, complete sequence Length = 181541 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 89 cctctctccccttcctttcttcc 111 ||||||||||||||||||||||| Sbjct: 133878 cctctctccccttcctttcttcc 133856
>gb|AC009102.10| Homo sapiens chromosome 16 clone RP11-441F2, complete sequence Length = 183394 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 89 cctctctccccttcctttcttcc 111 ||||||||||||||||||||||| Sbjct: 68118 cctctctccccttcctttcttcc 68140
>gb|AC104244.9| Homo sapiens chromosome 8, clone RP11-1038G5, complete sequence Length = 155899 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 93 tctccccttcctttcttccctga 115 ||||||||||||||||||||||| Sbjct: 22969 tctccccttcctttcttccctga 22947
>ref|XM_493930.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 915 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 133 ctttcccctcaaatctcacctcctcc 158 |||||||||| ||||||||||||||| Sbjct: 169 ctttcccctccaatctcacctcctcc 144
>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07, complete sequence Length = 164898 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 133 ctttcccctcaaatctcacctcctcc 158 |||||||||| ||||||||||||||| Sbjct: 111971 ctttcccctccaatctcacctcctcc 111996
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 133 ctttcccctcaaatctcacctcctcc 158 |||||||||| ||||||||||||||| Sbjct: 11376 ctttcccctccaatctcacctcctcc 11401
>gb|AC125055.3| Mus musculus BAC clone RP23-397L11 from chromosome 7, complete sequence Length = 209066 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 90 ctctctccccttcctttcttcc 111 |||||||||||||||||||||| Sbjct: 118216 ctctctccccttcctttcttcc 118195
>ref|NM_015576.1| Homo sapiens CAZ-associated structural protein (CAST1), mRNA Length = 6138 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 296 gctcctgctcctcctggccgcc 317 |||||||||||||||||||||| Sbjct: 29 gctcctgctcctcctggccgcc 50
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 133 ctttcccctcaaatctcacctcctcc 158 |||||||||| ||||||||||||||| Sbjct: 2917360 ctttcccctccaatctcacctcctcc 2917385
>gb|BC112391.1| Homo sapiens CAZ-associated structural protein, mRNA (cDNA clone MGC:133064 IMAGE:40008962), complete cds Length = 3644 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 296 gctcctgctcctcctggccgcc 317 |||||||||||||||||||||| Sbjct: 3 gctcctgctcctcctggccgcc 24
>dbj|AK102924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114D01, full insert sequence Length = 4269 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 133 ctttcccctcaaatctcacctcctcc 158 |||||||||| ||||||||||||||| Sbjct: 297 ctttcccctccaatctcacctcctcc 272
>gb|AC110248.22| Mus musculus chromosome 3, clone RP23-257P11, complete sequence Length = 206915 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 91 tctctccccttcctttcttccc 112 |||||||||||||||||||||| Sbjct: 122229 tctctccccttcctttcttccc 122250
>gb|BC111550.1| Homo sapiens CAZ-associated structural protein, mRNA (cDNA clone MGC:133063 IMAGE:40008953), complete cds Length = 3831 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 296 gctcctgctcctcctggccgcc 317 |||||||||||||||||||||| Sbjct: 3 gctcctgctcctcctggccgcc 24
>gb|AC098478.2| Homo sapiens chromosome 3 clone RP11-750K11, complete sequence Length = 217346 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 296 gctcctgctcctcctggccgcc 317 |||||||||||||||||||||| Sbjct: 72257 gctcctgctcctcctggccgcc 72236
>dbj|AB002376.2| Human mRNA for KIAA0378 gene, partial cds Length = 6137 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 296 gctcctgctcctcctggccgcc 317 |||||||||||||||||||||| Sbjct: 29 gctcctgctcctcctggccgcc 50
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cttcctttcttccctgacgcc 119 ||||||||||||||||||||| Sbjct: 522660 cttcctttcttccctgacgcc 522640 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cttcctttcttccctgacgcc 119 ||||||||||||||||||||| Sbjct: 234978 cttcctttcttccctgacgcc 234958
>gb|AF295721.1| Uncultured bacterium clone SR7 LigH-like protein gene, partial cds Length = 1053 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 524 tccgcccccagatcggcgccg 504
>gb|AF295720.1| Uncultured bacterium clone SR9 LigH-like protein gene, partial cds Length = 1050 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 521 tccgcccccagatcggcgccg 501
>gb|AF295717.1| Uncultured bacterium clone SR4 LigH-like protein gene, partial cds Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>gb|AC023591.8| Homo sapiens chromosome 15, clone RP11-768L13, complete sequence Length = 171456 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 cctctctccccttcctttcttccct 113 |||| |||||||||||||||||||| Sbjct: 129671 cctccctccccttcctttcttccct 129695
>gb|AC124560.4| Mus musculus BAC clone RP23-166O22 from chromosome 5, complete sequence Length = 222593 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 aacctctctccccttcctttcttcc 111 |||||||||| |||||||||||||| Sbjct: 40899 aacctctctctccttcctttcttcc 40875
>gb|AC125038.4| Mus musculus BAC clone RP23-333P7 from chromosome 5, complete sequence Length = 198463 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 aacctctctccccttcctttcttcc 111 |||||||||| |||||||||||||| Sbjct: 95198 aacctctctctccttcctttcttcc 95222
>emb|BX572100.1| Prochlorococcus marinus MIT9313 complete genome; segment 6/7 Length = 348071 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 cggccaccactttcccctcaa 144 ||||||||||||||||||||| Sbjct: 196930 cggccaccactttcccctcaa 196910
>emb|AJ494805.1|UBA494805 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate synthetase clone SS3 Length = 1059 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>emb|AJ494781.1|UBA494781 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate synthetase clone JI55G Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>emb|AJ494780.1|UBA494780 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate synthetase clone JI53G Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>emb|AJ494778.1|UBA494778 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate synthetase clone JI51G Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>emb|AJ494777.1|UBA494777 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate synthetase clone JI50G Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>emb|AJ494770.1|UBA494770 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate synthetase clone JI25G Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>emb|AJ494769.1|UBA494769 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate synthetase clone JI22G Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>emb|AJ494765.1|UBA494765 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate synthetase clone JI10G Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>emb|AJ494763.1|UBA494763 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate synthetase clone JI5G Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>emb|AJ494762.1|UBA494762 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate synthetase clone JI4G Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>emb|AJ494761.1|UBA494761 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate synthetase clone JI2G Length = 1056 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tccgcccccagatcggcgccg 218 ||||||||||||||||||||| Sbjct: 527 tccgcccccagatcggcgccg 507
>emb|BX470127.2| Mouse DNA sequence from clone RP24-280A6 on chromosome 4, complete sequence Length = 142803 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 tctctccccttcctttcttcc 111 ||||||||||||||||||||| Sbjct: 129726 tctctccccttcctttcttcc 129706
>gb|AC090398.12| Homo sapiens chromosome 18, clone RP11-669I1, complete sequence Length = 133378 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 ctctccccttcctttcttccc 112 ||||||||||||||||||||| Sbjct: 32404 ctctccccttcctttcttccc 32384
>gb|AC087525.6| Homo sapiens chromosome 15, clone RP11-321G12, complete sequence Length = 157590 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 89 cctctctccccttcctttcttccct 113 |||| |||||||||||||||||||| Sbjct: 99754 cctccctccccttcctttcttccct 99730
>gb|AC073333.5| Homo sapiens BAC clone RP11-455J15 from 7, complete sequence Length = 165616 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 ctctctccccttcctttcttc 110 ||||||||||||||||||||| Sbjct: 51945 ctctctccccttcctttcttc 51965
>gb|AC154831.2| Mus musculus BAC clone RP24-556A11 from chromosome 12, complete sequence Length = 199712 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 cctctctccccttcctttcttccct 113 ||||||||||||||| ||||||||| Sbjct: 87205 cctctctccccttcccttcttccct 87229
>gb|AC138123.2| Homo sapiens 12 BAC RP11-202G11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 107706 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 cctctctccccttcctttcttccct 113 |||| |||||||||||||||||||| Sbjct: 14916 cctccctccccttcctttcttccct 14940
>gb|AC073050.5| Homo sapiens BAC clone RP11-70E4 from 2, complete sequence Length = 135586 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 cctctctccccttcctttcttccct 113 |||||||| |||||||||||||||| Sbjct: 96016 cctctctctccttcctttcttccct 96040
>emb|AL824710.10| Mouse DNA sequence from clone RP23-35E16 on chromosome 2, complete sequence Length = 83371 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 89 cctctctccccttcctttcttccct 113 ||||||||||| ||||||||||||| Sbjct: 9739 cctctctccccctcctttcttccct 9715
>gb|AC102103.10| Mus musculus chromosome 15, clone RP23-82K1, complete sequence Length = 237423 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ccaccactttcccctcaaat 146 |||||||||||||||||||| Sbjct: 59774 ccaccactttcccctcaaat 59755
>gb|AC152563.1| Ornithorhynchus anatinus chromosome UNK clone OABb-291A1, complete sequence Length = 169955 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 ctctctccccttcctttcttccct 113 ||||| |||||||||||||||||| Sbjct: 153883 ctctcaccccttcctttcttccct 153860
>ref|XM_530362.1| PREDICTED: Pan troglodytes LOC458671 (LOC458671), mRNA Length = 694 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cccttcctttcttccctgac 116 |||||||||||||||||||| Sbjct: 378 cccttcctttcttccctgac 397
>ref|XM_529516.1| PREDICTED: Pan troglodytes LOC452192 (LOC452192), mRNA Length = 1542 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tgcgcgctcctgctcctcct 310 |||||||||||||||||||| Sbjct: 815 tgcgcgctcctgctcctcct 796
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 gctcctgctcctcctggccgccgc 319 ||||||||||||||| |||||||| Sbjct: 128019 gctcctgctcctcctcgccgccgc 128042
>gb|AC109239.8| Mus musculus chromosome 3, clone RP23-191N23, complete sequence Length = 187162 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cctcaaatctcacctcctcc 158 |||||||||||||||||||| Sbjct: 88073 cctcaaatctcacctcctcc 88092
>gb|AC103357.10| Mus musculus chromosome 14, clone RP24-201I14, complete sequence Length = 143401 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cctctctccccttcctttct 108 |||||||||||||||||||| Sbjct: 134865 cctctctccccttcctttct 134846
>gb|AC116392.12| Mus musculus chromosome 10, clone RP23-93D3, complete sequence Length = 275200 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ctccccttcctttcttccct 113 |||||||||||||||||||| Sbjct: 17442 ctccccttcctttcttccct 17461
>gb|AC124555.4| Mus musculus BAC clone RP23-245K17 from chromosome 14, complete sequence Length = 210174 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cctctctccccttcctttct 108 |||||||||||||||||||| Sbjct: 168766 cctctctccccttcctttct 168785
>gb|AC124563.4| Mus musculus BAC clone RP23-206B15 from chromosome 6, complete sequence Length = 210092 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tctccccttcctttcttccc 112 |||||||||||||||||||| Sbjct: 107483 tctccccttcctttcttccc 107502
>gb|AC118020.11| Mus musculus, clone RP23-459B19, complete sequence Length = 191669 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ctccccttcctttcttccct 113 |||||||||||||||||||| Sbjct: 78226 ctccccttcctttcttccct 78207
>gb|AC015884.15| Homo sapiens chromosome 17, clone RP11-216P6, complete sequence Length = 207661 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tcccgaaacctctctcccct 100 |||||||||||||||||||| Sbjct: 66734 tcccgaaacctctctcccct 66753
>gb|AC079316.15| Homo sapiens 12 BAC RP11-43D4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178905 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tgcgcgctcctgctcctcct 310 |||||||||||||||||||| Sbjct: 103194 tgcgcgctcctgctcctcct 103213
>gb|AC133210.3| Mus musculus chromosome UNK clone RP23-27L12, complete sequence Length = 210702 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cctctctccccttcctttct 108 |||||||||||||||||||| Sbjct: 207785 cctctctccccttcctttct 207766
>gb|AC122303.2| Mus musculus BAC clone RP23-279L13 from 6, complete sequence Length = 188201 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ctccccttcctttcttccct 113 |||||||||||||||||||| Sbjct: 115358 ctccccttcctttcttccct 115377
>gb|AC165338.3| Mus musculus BAC clone RP24-456K15 from chromosome 10, complete sequence Length = 165515 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cctctctccccttcctttct 108 |||||||||||||||||||| Sbjct: 105241 cctctctccccttcctttct 105222
>emb|AL512641.9| Human DNA sequence from clone RP11-139J15 on chromosome 10 Contains the 5' end of a novel gene (LOC221078) (FLJ23743), two novel genes, the gene for ADP-ribosylation-like factor 8 (ARL8), a programmed cell death 8 (apoptosis-inducing factor) (PDCD8) pseudogene and a CpG island, complete sequence Length = 172688 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 ctctctccccttcctttcttccct 113 |||||||| ||||||||||||||| Sbjct: 52947 ctctctcctcttcctttcttccct 52970
>emb|AL160271.19| Human DNA sequence from clone RP11-323H21 on chromosome 9q34.1-34.3 Contains the 5' end of the GRF2 gene for guanine nucleotide releasing factor 2, the 3' end of the CRSP8 gene for subunit 8 of the cofactor required for Sp1 transcriptional activation, a novel gene, an eukaryotic translation initiation factor 4A isoform 1 (EIF4A1) pseudogene and two CpG islands, complete sequence Length = 180209 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 ctctctccccttcctttcttccct 113 |||||||||||||||| ||||||| Sbjct: 105728 ctctctccccttccttccttccct 105751
>gb|AC113615.3| Homo sapiens BAC clone RP11-586D19 from 4, complete sequence Length = 164043 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 ctctctccccttcctttcttccct 113 |||| ||||||||||||||||||| Sbjct: 18852 ctctttccccttcctttcttccct 18829
>emb|AL627187.13| Mouse DNA sequence from clone RP23-319B15 on chromosome 11 Contains the 3' end of the Rnf130 gene for ring finger protein 130, a heterogeneous nuclear ribonucleoprotein A family pseudogene, a novel gene, genes 2700008N14Rik and 3010026O09Rik, the Sqstm1 gene for sequestosome 1, the Mgat4b gene for mannoside acetylglucosaminyltransferase 4 isoenzyme B, the Ltc4s gene for leukotriene C4 synthase and four CpG islands, complete sequence Length = 201654 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cctctctccccttcctttct 108 |||||||||||||||||||| Sbjct: 111082 cctctctccccttcctttct 111063
>emb|AL662843.11| Mouse DNA sequence from clone RP23-411E22 on chromosome 11 Contains the 3' end of the Col23a1 gene for procollagen (type XXIII, alpha 1), the 5' end of a novel gene and a CpG island, complete sequence Length = 155917 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 ctctctccccttcctttctt 109 |||||||||||||||||||| Sbjct: 76265 ctctctccccttcctttctt 76284
>gb|AC162913.3| Mus musculus BAC clone RP24-409P22 from chromosome 3, complete sequence Length = 175922 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cctcaaatctcacctcctcc 158 |||||||||||||||||||| Sbjct: 136569 cctcaaatctcacctcctcc 136588
>gb|AC007782.20| Homo sapiens 12 BAC RP11-515B12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166083 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tctccccttcctttcttccc 112 |||||||||||||||||||| Sbjct: 153051 tctccccttcctttcttccc 153070
>gb|AC091953.3| Homo sapiens chromosome 5 clone RP11-417J1, complete sequence Length = 172738 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 ctctctccccttcctttctt 109 |||||||||||||||||||| Sbjct: 33677 ctctctccccttcctttctt 33696
>ref|NM_136485.2| Drosophila melanogaster CG30377-RA (CG30377), mRNA Length = 3144 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 tcacctcctccgccacgcgc 167 |||||||||||||||||||| Sbjct: 812 tcacctcctccgccacgcgc 793
>gb|AC097634.2| Homo sapiens chromosome 3 clone RP11-154H23, complete sequence Length = 193553 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ctctctccccttcctttctt 109 |||||||||||||||||||| Sbjct: 55837 ctctctccccttcctttctt 55818
>gb|AC051642.5| Homo sapiens chromosome 8, clone RP11-583M2, complete sequence Length = 174445 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ctccccttcctttcttccct 113 |||||||||||||||||||| Sbjct: 47169 ctccccttcctttcttccct 47150
>gb|AC158970.3| Mus musculus chromosome 15, clone RP24-186A9, complete sequence Length = 208509 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ccaccactttcccctcaaat 146 |||||||||||||||||||| Sbjct: 49182 ccaccactttcccctcaaat 49201
>gb|AC091932.2| Homo sapiens chromosome 5 clone RP11-315A16, complete sequence Length = 167799 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ctctctccccttcctttctt 109 |||||||||||||||||||| Sbjct: 23312 ctctctccccttcctttctt 23293
>gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In BCRL2-GGT Region, complete sequence Length = 147086 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cccttcctttcttccctgac 116 |||||||||||||||||||| Sbjct: 101058 cccttcctttcttccctgac 101077
>gb|AC007664.12| Homo sapiens chromosome 22 clone b453h4 map 22q11, complete sequence Length = 162470 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cccttcctttcttccctgac 116 |||||||||||||||||||| Sbjct: 57144 cccttcctttcttccctgac 57163
>gb|AC002049.4| Homo sapiens Chromosome 22q11.2 Cosmid Clone 107d7 In BCRL2-GGT Region, complete sequence Length = 19026 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cccttcctttcttccctgac 116 |||||||||||||||||||| Sbjct: 493 cccttcctttcttccctgac 512
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 gctcctgctcctcctggccgccgc 319 ||||||||||||||| |||||||| Sbjct: 18392654 gctcctgctcctcctcgccgccgc 18392677
>gb|AC007084.7|AC007084 Drosophila melanogaster, chromosome 2R, region 43F-44A, BAC clone BACR26A16, complete sequence Length = 139410 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcacctcctccgccacgcgc 167 |||||||||||||||||||| Sbjct: 74871 tcacctcctccgccacgcgc 74890
>gb|AC009094.7|AC009094 Homo sapiens chromosome 16 clone RP11-430C1, complete sequence Length = 198781 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ctctccccttcctttcttcc 111 |||||||||||||||||||| Sbjct: 10457 ctctccccttcctttcttcc 10438
>gb|AC091533.27| Mus musculus strain C57BL/6J chromosome 11 clone rp23-30n4, complete sequence Length = 192628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cctctctccccttcctttct 108 |||||||||||||||||||| Sbjct: 144575 cctctctccccttcctttct 144594
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 tcggccaccactttcccctc 142 |||||||||||||||||||| Sbjct: 1690541 tcggccaccactttcccctc 1690560
>gb|AC002087.1|HSAC002087 Human BAC clone GS1-113D4 from 5p15.2, complete sequence Length = 154028 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 ctctctccccttcctttctt 109 |||||||||||||||||||| Sbjct: 11416 ctctctccccttcctttctt 11435
>dbj|AK098929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020C01, full insert sequence Length = 3367 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 gctcctgctcctcctggccgccgc 319 ||||||||||||||| |||||||| Sbjct: 113 gctcctgctcctcctcgccgccgc 136
>dbj|AK068415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151H23, full insert sequence Length = 3413 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 gctcctgctcctcctggccgccgc 319 ||||||||||||||| |||||||| Sbjct: 159 gctcctgctcctcctcgccgccgc 182
>gb|AC116469.13| Mus musculus chromosome 5, clone RP23-171F16, complete sequence Length = 207364 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ctctctccccttcctttctt 109 |||||||||||||||||||| Sbjct: 130144 ctctctccccttcctttctt 130125
>gb|AE003839.4| Drosophila melanogaster chromosome 2R, section 11 of 73 of the complete sequence Length = 254177 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 tcacctcctccgccacgcgc 167 |||||||||||||||||||| Sbjct: 117317 tcacctcctccgccacgcgc 117298
>emb|AL162831.6|CNS01RI2 Human chromosome 14 DNA sequence BAC R-1077A2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 208102 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 ctctctccccttcctttcttccct 113 |||||||||||||||| ||||||| Sbjct: 87480 ctctctccccttccttccttccct 87457
>gb|AC007450.1| Homo sapiens 12 BAC RP11-434C1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 210779 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 ctctctccccttcctttcttccct 113 |||||| ||||||||||||||||| Sbjct: 19513 ctctcttcccttcctttcttccct 19536
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ccgccacgcgctgcccgccg 176 |||||||||||||||||||| Sbjct: 1061044 ccgccacgcgctgcccgccg 1061025
>gb|AF055913.1|AF055913 Crithidia fasciculata tryparedoxin (TryX) gene, complete cds Length = 1292 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ctcctccgccacgcgctgcc 171 |||||||||||||||||||| Sbjct: 296 ctcctccgccacgcgctgcc 315
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 gctcctgctcctcctggccgccgc 319 ||||||||||||||| |||||||| Sbjct: 18552055 gctcctgctcctcctcgccgccgc 18552078
>gb|AC138616.4| Mus musculus BAC clone RP23-403D16 from 9, complete sequence Length = 196304 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cctctctccccttcctttct 108 |||||||||||||||||||| Sbjct: 101853 cctctctccccttcctttct 101834
>gb|U81830.1|HSU81830 Human cosmid LL12NC01-15A4, ETV6 gene, exon 1A and partial cds Length = 38345 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 ctctctccccttcctttcttccct 113 |||||| ||||||||||||||||| Sbjct: 27614 ctctcttcccttcctttcttccct 27591
>gb|AC151373.4| Aotus nancymaae clone CH258-480P12, complete sequence Length = 171933 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 ctctctccccttcctttcttccct 113 |||||||||| ||||||||||||| Sbjct: 62691 ctctctccccctcctttcttccct 62668
>gb|AC164630.6| Mus musculus 10 BAC RP23-153M4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187031 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 ctctctccccttcctttcttccct 113 ||||||||||| |||||||||||| Sbjct: 127333 ctctctcccctccctttcttccct 127356
>dbj|AB042326.1| Homo sapiens C4ST mRNA for chondroitin 4-sulfotranseferase, complete cds Length = 1554 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tgcgcgctcctgctcctcct 310 |||||||||||||||||||| Sbjct: 156 tgcgcgctcctgctcctcct 137 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,481,345 Number of Sequences: 3902068 Number of extensions: 2481345 Number of successful extensions: 87373 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86907 Number of HSP's gapped (non-prelim): 466 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
