ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FABH1_BACCR (Q81GM0) 3-oxoacyl-[acyl-carrier-protein] synthase 3... 30 2.2
2FABH1_BACAN (Q81JG0) 3-oxoacyl-[acyl-carrier-protein] synthase 3... 30 2.2
3MTSM_SERMA (P14230) Modification methylase SmaI (EC 2.1.1.113) (... 30 2.9
4FABH_OCEIH (Q8ERU6) 3-oxoacyl-[acyl-carrier-protein] synthase 3 ... 29 3.7
5FABH_STAS1 (Q49WB6) 3-oxoacyl-[acyl-carrier-protein] synthase 3 ... 28 6.4

>FABH1_BACCR (Q81GM0) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1 (EC|
           2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III
           protein 1) (Beta-ketoacyl-ACP synthase III 1) (KAS III
           1)
          Length = 310

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 235 EVRRGQKKDGDMGVGIGDGECAGGTSWWVLLLRW 134
           E++ G+ +DGD+ + +G G   GG +W  + LRW
Sbjct: 278 ELQNGRIQDGDLIILVGFG---GGLTWGAVALRW 308



to top

>FABH1_BACAN (Q81JG0) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1 (EC|
           2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III
           protein 1) (Beta-ketoacyl-ACP synthase III 1) (KAS III
           1)
          Length = 310

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 235 EVRRGQKKDGDMGVGIGDGECAGGTSWWVLLLRW 134
           E++ G+ +DGD+ + +G G   GG +W  + LRW
Sbjct: 278 ELQNGRIQDGDLIILVGFG---GGLTWGAVALRW 308



to top

>MTSM_SERMA (P14230) Modification methylase SmaI (EC 2.1.1.113) (N-4|
           cytosine-specific methyltransferase SmaI) (M.SmaI)
          Length = 292

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 235 EVRRGQKKDGDMGVGIGDGECAGGTSW 155
           +VRR  K DG + + IGD   +GG +W
Sbjct: 84  DVRRTLKDDGTLWLNIGDSYTSGGRTW 110



to top

>FABH_OCEIH (Q8ERU6) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 312

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 232 VRRGQKKDGDMGVGIGDGECAGGTSWWVLLLRW 134
           V+ G+ KD D+ V +G G   GG +W  + LRW
Sbjct: 281 VKEGKIKDNDLIVLVGFG---GGLTWGAVALRW 310



to top

>FABH_STAS1 (Q49WB6) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 313

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 235 EVRRGQKKDGDMGVGIGDGECAGGTSWWVLLLRW 134
           E+  G+ KD D+ V +G G   GG +W  + LRW
Sbjct: 281 ELENGRIKDDDVLVLVGFG---GGLTWGAVTLRW 311


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,663,839
Number of Sequences: 219361
Number of extensions: 417979
Number of successful extensions: 1855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1854
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top