ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.36
2dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 44 0.36
3gb|M33818.1|PSECARAA P.aeruginosa carbamoylphosphate synthetase ... 44 0.36
4gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.4
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
6dbj|AP004847.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
7dbj|AK101654.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
8gb|AY108043.1| Zea mays PCO126675 mRNA sequence 42 1.4
9gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genom... 40 5.6
10gb|AC163680.2| Mus musculus BAC clone RP24-111M15 from chromosom... 40 5.6
11ref|XM_463123.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
12ref|XM_472239.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
13gb|AC154907.3| Mus musculus BAC clone RP23-312K18 from chromosom... 40 5.6
14gb|AF448724.1| Sinorhizobium meliloti phage PBC5, complete genome 40 5.6
15ref|XM_656414.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.6
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.6
17emb|CR956362.5| Pig DNA sequence from clone CH242-98D1 on chromo... 40 5.6
18emb|CR391920.11| Zebrafish DNA sequence from clone CH211-213B7 i... 40 5.6
19emb|BX842604.1|OSJN00294 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
20emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
21emb|AL662790.21| Mouse DNA sequence from clone RP23-53E2 on chro... 40 5.6
22gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.6
23gb|BC112811.1| Bos taurus presenilin 2, mRNA (cDNA clone MGC:137... 40 5.6
24gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 5.6
25ref|NM_031087.1| Rattus norvegicus presenilin 2 (Psen2), mRNA 40 5.6
26ref|NM_174440.3| Bos taurus presenilin 2 (PSEN2), mRNA 40 5.6
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
29gb|AC002351.2| Homo sapiens 12 PAC RP1-46F2 (Roswell Park Cancer... 40 5.6
30gb|AC009145.4|AC009145 Homo sapiens chromosome 16 clone RP11-556... 40 5.6
31gb|AC108439.22| Mus musculus chromosome 8, clone RP23-214F1, com... 40 5.6
32emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, com... 40 5.6
33dbj|AK105435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
34dbj|AK070268.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
35dbj|AK069225.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
36gb|BC078805.1| Rattus norvegicus presenilin 2, mRNA (cDNA clone ... 40 5.6
37gb|AF038937.1|AF038937 Bos taurus presenilin 2 mRNA, complete cds 40 5.6
38emb|AL442103.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.6
39emb|X99267.1|RNX99267 R.norvegicus mRNA for presenilin-2 40 5.6
40gb|AC124095.7| Mus musculus chromosome 1, clone RP23-245G9, comp... 40 5.6
41emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
42dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynt... 40 5.6
43emb|Z15030.1|HSVMYCLC2 H.sapiens gene for ventricular myosin lig... 40 5.6
44gb|L01652.1|HUMVMLC Human ventricular myosin light chain 2 gene,... 40 5.6
45dbj|D83700.1| Rattus norvegicus cDNA for presenilin-2, complete cds 40 5.6
46dbj|AB004454.1| Rattus norvegicus mRNA for presenilin-2, complet... 40 5.6 
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 312     cctgctgctcgccgtggcggcc 333
               ||||||||||||||||||||||
Sbjct: 7066765 cctgctgctcgccgtggcggcc 7066786
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 302    tcctccccctcctgctgctcgccgtg 327
              ||||||||||||||||||||| ||||
Sbjct: 805011 tcctccccctcctgctgctcggcgtg 805036
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>gb|M33818.1|PSECARAA P.aeruginosa carbamoylphosphate synthetase (carA and carB) genes,
            complete cds, and 5' end
          Length = 1747

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 357  ggcgctcgggctcaaccaggacggcctctacctg 390
            ||||||||||||||||| ||||||| ||| ||||
Sbjct: 1210 ggcgctcgggctcaacccggacggcatcttcctg 1243
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 318    gctcgccgtggcggccaatgccgcc 342
              ||||||||| |||||||||||||||
Sbjct: 264421 gctcgccgtcgcggccaatgccgcc 264397
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                                     
Query: 286      accaccatggccgccttcctccccctcctgctgctcg 322
                ||||||||||||||| |||||| ||||||||| ||||
Sbjct: 20076424 accaccatggccgcc-tcctcctcctcctgcttctcg 20076459
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>dbj|AP004847.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1298_H07
          Length = 106434

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                                  
Query: 286   accaccatggccgccttcctccccctcctgctgctcg 322
             ||||||||||||||| |||||| ||||||||| ||||
Sbjct: 24947 accaccatggccgcc-tcctcctcctcctgcttctcg 24982
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>dbj|AK101654.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057E24, full
           insert sequence
          Length = 926

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                
Query: 286 accaccatggccgccttcctccccctcctgctgctcg 322
           ||||||||||||||| |||||| ||||||||| ||||
Sbjct: 331 accaccatggccgcc-tcctcctcctcctgcttctcg 296
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>gb|AY108043.1| Zea mays PCO126675 mRNA sequence
          Length = 708

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 290 ccatggccgccttcctccccctcctgctgctcgccgt 326
           |||||||||||  ||||||||||||| | ||||||||
Sbjct: 77  ccatggccgcccgcctccccctcctggtcctcgccgt 113
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>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete
             sequence
          Length = 157397

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   ccccatccatctccatctca 141
             ||||||||||||||||||||
Sbjct: 43004 ccccatccatctccatctca 43023
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>gb|AC163680.2| Mus musculus BAC clone RP24-111M15 from chromosome 8, complete sequence
          Length = 207917

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    tgtcctctcccccatccatc 132
              ||||||||||||||||||||
Sbjct: 139121 tgtcctctcccccatccatc 139140
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>ref|XM_463123.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 773

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 ccccatccatctccatctca 141
           ||||||||||||||||||||
Sbjct: 417 ccccatccatctccatctca 436
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>ref|XM_472239.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2403

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  atccatctccatctcaataa 145
            ||||||||||||||||||||
Sbjct: 1497 atccatctccatctcaataa 1478
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>gb|AC154907.3| Mus musculus BAC clone RP23-312K18 from chromosome 8, complete sequence
          Length = 182534

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   tgtcctctcccccatccatc 132
             ||||||||||||||||||||
Sbjct: 27191 tgtcctctcccccatccatc 27210
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>gb|AF448724.1| Sinorhizobium meliloti phage PBC5, complete genome
          Length = 57416

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   ctcgccgtcgccaatgccga 195
             ||||||||||||||||||||
Sbjct: 33015 ctcgccgtcgccaatgccga 33034
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>ref|XM_656414.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3902.2), mRNA
          Length = 1596

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 177 tcgccgtcgccaatgccgac 196
           ||||||||||||||||||||
Sbjct: 758 tcgccgtcgccaatgccgac 777
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 122      ccccatccatctccatctca 141
                ||||||||||||||||||||
Sbjct: 22625142 ccccatccatctccatctca 22625123
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>emb|CR956362.5| Pig DNA sequence from clone CH242-98D1 on chromosome 17, complete
             sequence
          Length = 212503

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   ctccccctcctgctgctcgc 323
             ||||||||||||||||||||
Sbjct: 16922 ctccccctcctgctgctcgc 16903
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>emb|CR391920.11| Zebrafish DNA sequence from clone CH211-213B7 in linkage group 16,
              complete sequence
          Length = 199710

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    ctcccccatccatctccatc 138
              ||||||||||||||||||||
Sbjct: 149319 ctcccccatccatctccatc 149338
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>emb|BX842604.1|OSJN00294 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1160F02, complete
              sequence
          Length = 139971

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    ctctcccccatccatctccatctc 140
              ||||||||| ||||||||||||||
Sbjct: 106285 ctctcccccctccatctccatctc 106308
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>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23,
             complete sequence
          Length = 130273

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   cccatcgccgacgcagccga 279
             ||||||||||||||||||||
Sbjct: 49866 cccatcgccgacgcagccga 49847
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>emb|AL662790.21| Mouse DNA sequence from clone RP23-53E2 on chromosome 11 Contains the 5'
              end of a novel pseudogene (similar to hypothetical protein
              TR:Q8C517), 3 novel pseudogenes (similar to hypothetical
              protein TR:Q8C517) and the 5' end of the Col1a1 gene for
              pro-collagen type I alpha 1, complete sequence
          Length = 133405

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 115    tcctctcccccatccatctccatc 138
              ||||| ||||||||||||||||||
Sbjct: 125672 tcctcacccccatccatctccatc 125695
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 383     tctacctgcttgacgccaagcgcg 406
               |||||||||| |||||||||||||
Sbjct: 2736357 tctacctgctggacgccaagcgcg 2736334
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>gb|BC112811.1| Bos taurus presenilin 2, mRNA (cDNA clone MGC:137335 IMAGE:8175412),
            complete cds
          Length = 2205

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  ccctcctgctgctcgccgtg 327
            ||||||||||||||||||||
Sbjct: 1475 ccctcctgctgctcgccgtg 1494
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 388     ctgcttgacgccaagcgcgc 407
               ||||||||||||||||||||
Sbjct: 3094302 ctgcttgacgccaagcgcgc 3094283
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>ref|NM_031087.1| Rattus norvegicus presenilin 2 (Psen2), mRNA
          Length = 2088

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  ccctcctgctgctcgccgtg 327
            ||||||||||||||||||||
Sbjct: 1325 ccctcctgctgctcgccgtg 1344
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>ref|NM_174440.3| Bos taurus presenilin 2 (PSEN2), mRNA
          Length = 2205

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  ccctcctgctgctcgccgtg 327
            ||||||||||||||||||||
Sbjct: 1475 ccctcctgctgctcgccgtg 1494
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 260      cccatcgccgacgcagccga 279
                ||||||||||||||||||||
Sbjct: 23607185 cccatcgccgacgcagccga 23607166



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    ctctcccccatccatctccatctc 140
              ||||||||| ||||||||||||||
Sbjct: 106285 ctctcccccctccatctccatctc 106308
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 122      ccccatccatctccatctca 141
                ||||||||||||||||||||
Sbjct: 22618171 ccccatccatctccatctca 22618152
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>gb|AC002351.2| Homo sapiens 12 PAC RP1-46F2 (Roswell Park Cancer Institute Human PAC
              Library) complete sequence
          Length = 149679

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    ggccgccttcctccccctcc 313
              ||||||||||||||||||||
Sbjct: 106705 ggccgccttcctccccctcc 106686
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>gb|AC009145.4|AC009145 Homo sapiens chromosome 16 clone RP11-556H2, complete sequence
          Length = 182302

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   gtcctctcccccatccatct 133
             ||||||||||||||||||||
Sbjct: 16537 gtcctctcccccatccatct 16556
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>gb|AC108439.22| Mus musculus chromosome 8, clone RP23-214F1, complete sequence
          Length = 205732

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   tcctccccctcctgctgctc 321
             ||||||||||||||||||||
Sbjct: 45710 tcctccccctcctgctgctc 45729
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>emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, complete sequence
          Length = 212599

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    ccatccatctccatctcaat 143
              ||||||||||||||||||||
Sbjct: 142371 ccatccatctccatctcaat 142390
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>dbj|AK105435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F11, full
            insert sequence
          Length = 2699

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  atccatctccatctcaataa 145
            ||||||||||||||||||||
Sbjct: 1542 atccatctccatctcaataa 1523
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>dbj|AK070268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E14, full
           insert sequence
          Length = 773

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 ccccatccatctccatctca 141
           ||||||||||||||||||||
Sbjct: 417 ccccatccatctccatctca 436
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>dbj|AK069225.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013E16, full
           insert sequence
          Length = 1268

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 117 ctctcccccatccatctccatctc 140
           ||||||||| ||||||||||||||
Sbjct: 128 ctctcccccctccatctccatctc 151
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>gb|BC078805.1| Rattus norvegicus presenilin 2, mRNA (cDNA clone MGC:93382
            IMAGE:7109917), complete cds
          Length = 1628

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  ccctcctgctgctcgccgtg 327
            ||||||||||||||||||||
Sbjct: 1302 ccctcctgctgctcgccgtg 1321
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>gb|AF038937.1|AF038937 Bos taurus presenilin 2 mRNA, complete cds
          Length = 2004

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  ccctcctgctgctcgccgtg 327
            ||||||||||||||||||||
Sbjct: 1290 ccctcctgctgctcgccgtg 1309
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>emb|AL442103.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0102C09, complete
             sequence
          Length = 72636

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   ctctcccccatccatctccatctc 140
             ||||||||| ||||||||||||||
Sbjct: 53162 ctctcccccctccatctccatctc 53185
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>emb|X99267.1|RNX99267 R.norvegicus mRNA for presenilin-2
          Length = 2088

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  ccctcctgctgctcgccgtg 327
            ||||||||||||||||||||
Sbjct: 1325 ccctcctgctgctcgccgtg 1344
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>gb|AC124095.7| Mus musculus chromosome 1, clone RP23-245G9, complete sequence
          Length = 198825

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 135    catctcaataacagcacccaccaa 158
              |||||||||| |||||||||||||
Sbjct: 101719 catctcaataccagcacccaccaa 101742
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>emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0068L06,
             complete sequence
          Length = 145517

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   ctctcccccatccatctccatctc 140
             ||||||||| ||||||||||||||
Sbjct: 37534 ctctcccccctccatctccatctc 37557
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>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster,
             partial and complete cds
          Length = 113234

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   cgacgcccatgtcgccgtcc 212
             ||||||||||||||||||||
Sbjct: 23991 cgacgcccatgtcgccgtcc 24010
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>emb|Z15030.1|HSVMYCLC2 H.sapiens gene for ventricular myosin light chain 2
          Length = 11997

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  ggccgccttcctccccctcc 313
            ||||||||||||||||||||
Sbjct: 1371 ggccgccttcctccccctcc 1352
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>gb|L01652.1|HUMVMLC Human ventricular myosin light chain 2 gene, seven exons
          Length = 11997

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  ggccgccttcctccccctcc 313
            ||||||||||||||||||||
Sbjct: 1371 ggccgccttcctccccctcc 1352
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>dbj|D83700.1| Rattus norvegicus cDNA for presenilin-2, complete cds
          Length = 1347

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  ccctcctgctgctcgccgtg 327
            ||||||||||||||||||||
Sbjct: 1205 ccctcctgctgctcgccgtg 1224
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>dbj|AB004454.1| Rattus norvegicus mRNA for presenilin-2, complete cds
          Length = 1414

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  ccctcctgctgctcgccgtg 327
            ||||||||||||||||||||
Sbjct: 1212 ccctcctgctgctcgccgtg 1231


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,572,850
Number of Sequences: 3902068
Number of extensions: 2572850
Number of successful extensions: 69457
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 68996
Number of HSP's gapped (non-prelim): 464
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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