ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187597.1| Oryza sativa (japonica cultivar-group), predic... 252 9e-64
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 252 9e-64
3gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome... 252 9e-64
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 252 9e-64
5dbj|AK100541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
7dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
8dbj|AK105382.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
9ref|NM_191221.1| Oryza sativa (japonica cultivar-group), predic... 46 0.10
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
11dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
12dbj|AK103775.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
13dbj|AK102455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
14dbj|AK067731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
15dbj|AK064990.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
16gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 44 0.41
17ref|NM_001005877.1| Rattus norvegicus G protein-coupled receptor... 42 1.6
18gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.6
19dbj|AB106675.1| Rattus norvegicus mRNA for GPR43, complete cds 42 1.6
20ref|XM_316465.2| Anopheles gambiae str. PEST ENSANGP00000021033 ... 42 1.6
21ref|XM_475716.1| Oryza sativa (japonica cultivar-group), predic... 40 6.4
22gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, com... 40 6.4
23gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 6.4
24gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
25ref|XM_001000597.1| PREDICTED: Mus musculus zinc finger, A20 dom... 40 6.4
26gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, c... 40 6.4
27ref|XM_544464.2| PREDICTED: Canis familiaris similar to acid sph... 40 6.4
28gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence 40 6.4
29emb|AL117344.12|HSJ395C13 Human DNA sequence from clone RP3-395C... 40 6.4
30emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.4
31ref|NM_009551.2| Mus musculus zinc finger, A20 domain containing... 40 6.4
32emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ... 40 6.4
33dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 6.4
34dbj|AK125637.1| Homo sapiens cDNA FLJ43649 fis, clone SYNOV4001326 40 6.4
35dbj|AK131911.1| Mus musculus adult male tongue cDNA, RIKEN full-... 40 6.4
36ref|XM_925812.1| PREDICTED: Homo sapiens hypothetical gene suppo... 40 6.4
37dbj|AK076397.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 6.4
38dbj|AK018054.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 6.4
39dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
40dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
41gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) ch... 40 6.4
42gb|AC090425.15| Homo sapiens 3 BAC RP11-15L13 (Roswell Park Canc... 40 6.4
43gb|AC073896.41| Homo sapiens 12 BAC RP11-977G19 (Roswell Park Ca... 40 6.4
44ref|XM_215251.3| PREDICTED: Rattus norvegicus zinc finger protei... 40 6.4
45ref|NM_001013682.1| Homo sapiens hypothetical gene supported by ... 40 6.4
46dbj|AK072066.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
47gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple... 40 6.4
48gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.4
49gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
50emb|AL772319.13| Mouse DNA sequence from clone RP23-397E2 on chr... 40 6.4
51gb|BC080270.1| Mus musculus cDNA clone IMAGE:6816490, containing... 40 6.4
52emb|AL954151.8| Mouse DNA sequence from clone RP24-370P7 on chro... 40 6.4 
>ref|NM_187597.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2583

 Score =  252 bits (127), Expect = 9e-64
 Identities = 208/235 (88%)
 Strand = Plus / Plus

                                                                       
Query: 237 gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 296
           ||||| |||||  |||||||||| || ||||||||   ||||||||| ||||||||||||
Sbjct: 106 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 165

                                                                       
Query: 297 gcgccgcgcccgcgcaccatcgtcgtcgccaaccacctcccgatccgggcccaccgcccg 356
            ||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 166 tcgccgcggccgcgcaccatcgtggtcgccaaccacctccctatccgggctcaccgcccg 225

                                                                       
Query: 357 gcgtcgccgtcggagccgtggaccttctcgtgggacgaggactcgctgctccgccacgtg 416
           ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| | 
Sbjct: 226 gcgtcgccgtcggagccgtggaccttctcctgggacgaggactccctcctccgccacctc 285

                                                                  
Query: 417 cagaagagctcctcctccccgtccatggagttcgtctacatcggctgcctccgcg 471
           ||| |    |||||||||||  ||||||||||| |||||||||||||||||||||
Sbjct: 286 cagcactcgtcctcctcccccgccatggagttcatctacatcggctgcctccgcg 340



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 144 tcctactccaacctgcttgacctggcca 171
           ||||||||||||||||| ||||||||||
Sbjct: 13  tcctactccaacctgctggacctggcca 40
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  252 bits (127), Expect = 9e-64
 Identities = 208/235 (88%)
 Strand = Plus / Minus

                                                                           
Query: 237     gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 296
               ||||| |||||  |||||||||| || ||||||||   ||||||||| ||||||||||||
Sbjct: 6490619 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 6490560

                                                                           
Query: 297     gcgccgcgcccgcgcaccatcgtcgtcgccaaccacctcccgatccgggcccaccgcccg 356
                ||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 6490559 tcgccgcggccgcgcaccatcgtggtcgccaaccacctccctatccgggctcaccgcccg 6490500

                                                                           
Query: 357     gcgtcgccgtcggagccgtggaccttctcgtgggacgaggactcgctgctccgccacgtg 416
               ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| | 
Sbjct: 6490499 gcgtcgccgtcggagccgtggaccttctcctgggacgaggactccctcctccgccacctc 6490440

                                                                      
Query: 417     cagaagagctcctcctccccgtccatggagttcgtctacatcggctgcctccgcg 471
               ||| |    |||||||||||  ||||||||||| |||||||||||||||||||||
Sbjct: 6490439 cagcactcgtcctcctcccccgccatggagttcatctacatcggctgcctccgcg 6490385



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 144     tcctactccaacctgcttgacctggcca 171
               ||||||||||||||||| ||||||||||
Sbjct: 6490712 tcctactccaacctgctggacctggcca 6490685
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>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0081P02, complete sequence
          Length = 162425

 Score =  252 bits (127), Expect = 9e-64
 Identities = 208/235 (88%)
 Strand = Plus / Minus

                                                                         
Query: 237   gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 296
             ||||| |||||  |||||||||| || ||||||||   ||||||||| ||||||||||||
Sbjct: 33381 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 33322

                                                                         
Query: 297   gcgccgcgcccgcgcaccatcgtcgtcgccaaccacctcccgatccgggcccaccgcccg 356
              ||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 33321 tcgccgcggccgcgcaccatcgtggtcgccaaccacctccctatccgggctcaccgcccg 33262

                                                                         
Query: 357   gcgtcgccgtcggagccgtggaccttctcgtgggacgaggactcgctgctccgccacgtg 416
             ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| | 
Sbjct: 33261 gcgtcgccgtcggagccgtggaccttctcctgggacgaggactccctcctccgccacctc 33202

                                                                    
Query: 417   cagaagagctcctcctccccgtccatggagttcgtctacatcggctgcctccgcg 471
             ||| |    |||||||||||  ||||||||||| |||||||||||||||||||||
Sbjct: 33201 cagcactcgtcctcctcccccgccatggagttcatctacatcggctgcctccgcg 33147



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 144   tcctactccaacctgcttgacctggcca 171
             ||||||||||||||||| ||||||||||
Sbjct: 33474 tcctactccaacctgctggacctggcca 33447
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  252 bits (127), Expect = 9e-64
 Identities = 208/235 (88%)
 Strand = Plus / Minus

                                                                           
Query: 237     gtggtcaccacgccggggctcatggaggactcccccgcgtccccctccacgccgtccccg 296
               ||||| |||||  |||||||||| || ||||||||   ||||||||| ||||||||||||
Sbjct: 6489832 gtggtgaccaccgcggggctcatcgacgactccccgctgtccccctcgacgccgtccccg 6489773

                                                                           
Query: 297     gcgccgcgcccgcgcaccatcgtcgtcgccaaccacctcccgatccgggcccaccgcccg 356
                ||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 6489772 tcgccgcggccgcgcaccatcgtggtcgccaaccacctccctatccgggctcaccgcccg 6489713

                                                                           
Query: 357     gcgtcgccgtcggagccgtggaccttctcgtgggacgaggactcgctgctccgccacgtg 416
               ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| | 
Sbjct: 6489712 gcgtcgccgtcggagccgtggaccttctcctgggacgaggactccctcctccgccacctc 6489653

                                                                      
Query: 417     cagaagagctcctcctccccgtccatggagttcgtctacatcggctgcctccgcg 471
               ||| |    |||||||||||  ||||||||||| |||||||||||||||||||||
Sbjct: 6489652 cagcactcgtcctcctcccccgccatggagttcatctacatcggctgcctccgcg 6489598



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 144     tcctactccaacctgcttgacctggcca 171
               ||||||||||||||||| ||||||||||
Sbjct: 6489925 tcctactccaacctgctggacctggcca 6489898
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>dbj|AK100541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102I04, full
           insert sequence
          Length = 2626

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 443 ggagttcgtctacatcggctgcctccgcg 471
           ||||||| |||||||||||||||||||||
Sbjct: 4   ggagttcatctacatcggctgcctccgcg 32
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 440      catggagttcgtctacatcggctgcctccgcg 471
                |||||||||||||||| ||||| |||||||||
Sbjct: 13821713 catggagttcgtctacgtcggcggcctccgcg 13821744
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>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1655_B12
          Length = 132736

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 440   catggagttcgtctacatcggctgcctccgcg 471
             |||||||||||||||| ||||| |||||||||
Sbjct: 71197 catggagttcgtctacgtcggcggcctccgcg 71228
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>dbj|AK105382.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B06, full
            insert sequence
          Length = 4111

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 440  catggagttcgtctacatcggctgcctccgcg 471
            |||||||||||||||| ||||| |||||||||
Sbjct: 1055 catggagttcgtctacgtcggcggcctccgcg 1086
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>ref|NM_191221.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2739

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 374 gtggaccttctcgtgggacgaggactcgctgctcc 408
           |||| ||||||| |||||||| |||||||||||||
Sbjct: 294 gtggtccttctcatgggacgacgactcgctgctcc 328
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 374      gtggaccttctcgtgggacgaggactcgctgctcc 408
                |||| ||||||| |||||||| |||||||||||||
Sbjct: 31370264 gtggtccttctcatgggacgacgactcgctgctcc 31370230
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>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0481E12
          Length = 161563

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 374    gtggaccttctcgtgggacgaggactcgctgctcc 408
              |||| ||||||| |||||||| |||||||||||||
Sbjct: 124547 gtggtccttctcatgggacgacgactcgctgctcc 124513
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>dbj|AK103775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033143P14, full
           insert sequence
          Length = 3039

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 374 gtggaccttctcgtgggacgaggactcgctgctcc 408
           |||| ||||||| |||||||| |||||||||||||
Sbjct: 527 gtggtccttctcatgggacgacgactcgctgctcc 561
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>dbj|AK102455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094A19, full
           insert sequence
          Length = 3876

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 374 gtggaccttctcgtgggacgaggactcgctgctcc 408
           |||| ||||||| |||||||| |||||||||||||
Sbjct: 540 gtggtccttctcatgggacgacgactcgctgctcc 574
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>dbj|AK067731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116P06, full
           insert sequence
          Length = 3432

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 374 gtggaccttctcgtgggacgaggactcgctgctcc 408
           |||| ||||||| |||||||| |||||||||||||
Sbjct: 540 gtggtccttctcatgggacgacgactcgctgctcc 574
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>dbj|AK064990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D09, full
           insert sequence
          Length = 3272

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 374 gtggaccttctcgtgggacgaggactcgctgctcc 408
           |||| ||||||| |||||||| |||||||||||||
Sbjct: 540 gtggtccttctcatgggacgacgactcgctgctcc 574
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 351    cgcccggcgtcgccgtcggagc 372
              ||||||||||||||||||||||
Sbjct: 276390 cgcccggcgtcgccgtcggagc 276369
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>ref|NM_001005877.1| Rattus norvegicus G protein-coupled receptor 43 (Gpr43), mRNA
          Length = 993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 344 ggcccaccgcccggcgtcgcc 364
           |||||||||||||||||||||
Sbjct: 667 ggcccaccgcccggcgtcgcc 647
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 287     gccgtccccggcgccgcgccc 307
               |||||||||||||||||||||
Sbjct: 3305385 gccgtccccggcgccgcgccc 3305405



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 286     cgccgtccccggcgccgcgcccgcg 310
               ||||||||||| |||||||||||||
Sbjct: 1570108 cgccgtccccgccgccgcgcccgcg 1570084
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>dbj|AB106675.1| Rattus norvegicus mRNA for GPR43, complete cds
          Length = 993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 344 ggcccaccgcccggcgtcgcc 364
           |||||||||||||||||||||
Sbjct: 667 ggcccaccgcccggcgtcgcc 647
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>ref|XM_316465.2| Anopheles gambiae str. PEST ENSANGP00000021033 (ENSANGG00000018544),
            partial mRNA
          Length = 3354

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 323  cgccaaccacctcccgatccgggcc 347
            |||||||||||||||| ||||||||
Sbjct: 1129 cgccaaccacctcccgctccgggcc 1105
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>ref|XM_475716.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2700

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 381 ttctcgtgggacgaggactcgctgctcc 408
           |||||||||||||| |||||||| ||||
Sbjct: 295 ttctcgtgggacgacgactcgctcctcc 322
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>gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, complete sequence
          Length = 200891

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 286   cgccgtccccggcgccgcgcccgc 309
             |||||||||||||||||| |||||
Sbjct: 68706 cgccgtccccggcgccgcccccgc 68683
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 395     ggactcgctgctccgccacg 414
               ||||||||||||||||||||
Sbjct: 4304149 ggactcgctgctccgccacg 4304130
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>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10,
             complete sequence
          Length = 143073

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 381   ttctcgtgggacgaggactcgctgctcc 408
             |||||||||||||| |||||||| ||||
Sbjct: 82112 ttctcgtgggacgacgactcgctcctcc 82139
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>ref|XM_001000597.1| PREDICTED: Mus musculus zinc finger, A20 domain containing 2,
           transcript variant 3 (Za20d2), mRNA
          Length = 4692

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 ggcccaccgcccggcgtcgc 363
           ||||||||||||||||||||
Sbjct: 166 ggcccaccgcccggcgtcgc 185
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>gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, complete sequence
          Length = 245390

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    ggcccaccgcccggcgtcgc 363
              ||||||||||||||||||||
Sbjct: 102102 ggcccaccgcccggcgtcgc 102121
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>ref|XM_544464.2| PREDICTED: Canis familiaris similar to acid sphingomyelinase-like
            phosphodiesterase 3B isoform 1 (LOC487338), mRNA
          Length = 1407

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  ccccggcgccgcgcccgcgc 311
            ||||||||||||||||||||
Sbjct: 1329 ccccggcgccgcgcccgcgc 1348
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>gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence
          Length = 181705

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    cgggaggaggccatggtgtc 139
              ||||||||||||||||||||
Sbjct: 106586 cgggaggaggccatggtgtc 106567
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>emb|AL117344.12|HSJ395C13 Human DNA sequence from clone RP3-395C13 on chromosome 6q25.2-26
             Contains the 5' end of a novel gene, a hypothetical
             protein PNAS-131 pseudogene and a CpG island, complete
             sequence
          Length = 150336

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gcgcctcccttcttcctcct 43
             ||||||||||||||||||||
Sbjct: 12867 gcgcctcccttcttcctcct 12848
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 289     cgtccccggcgccgcgcccg 308
               ||||||||||||||||||||
Sbjct: 1728411 cgtccccggcgccgcgcccg 1728392
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>ref|NM_009551.2| Mus musculus zinc finger, A20 domain containing 2 (Za20d2), mRNA
          Length = 2835

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 ggcccaccgcccggcgtcgc 363
           ||||||||||||||||||||
Sbjct: 412 ggcccaccgcccggcgtcgc 431
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>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    cctccacgccgtccccggcg 299
              ||||||||||||||||||||
Sbjct: 117217 cctccacgccgtccccggcg 117198
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    gccgtccccggcgccgcgcc 306
              ||||||||||||||||||||
Sbjct: 118770 gccgtccccggcgccgcgcc 118751
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>dbj|AK125637.1| Homo sapiens cDNA FLJ43649 fis, clone SYNOV4001326
          Length = 3837

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  gcgcctcccttcttcctcct 43
           ||||||||||||||||||||
Sbjct: 123 gcgcctcccttcttcctcct 142
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>dbj|AK131911.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310021N08 product:zinc finger protein
           216, full insert sequence
          Length = 2559

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 ggcccaccgcccggcgtcgc 363
           ||||||||||||||||||||
Sbjct: 406 ggcccaccgcccggcgtcgc 425
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>ref|XM_925812.1| PREDICTED: Homo sapiens hypothetical gene supported by AK125637
           (LOC401280), mRNA
          Length = 3823

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  gcgcctcccttcttcctcct 43
           ||||||||||||||||||||
Sbjct: 117 gcgcctcccttcttcctcct 136
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>dbj|AK076397.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:4732491G13 product:zinc finger protein
           216, full insert sequence
          Length = 2835

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 ggcccaccgcccggcgtcgc 363
           ||||||||||||||||||||
Sbjct: 412 ggcccaccgcccggcgtcgc 431
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>dbj|AK018054.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830475F03 product:zinc finger protein
           216, full insert sequence
          Length = 1589

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 ggcccaccgcccggcgtcgc 363
           ||||||||||||||||||||
Sbjct: 427 ggcccaccgcccggcgtcgc 446
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 311      caccatcgtcgtcgccaacc 330
                ||||||||||||||||||||
Sbjct: 15327459 caccatcgtcgtcgccaacc 15327478
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 381      ttctcgtgggacgaggactcgctgctcc 408
                |||||||||||||| |||||||| ||||
Sbjct: 25441751 ttctcgtgggacgacgactcgctcctcc 25441778
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>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18,
             complete sequence
          Length = 144720

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   caccatcgtcgtcgccaacc 330
             ||||||||||||||||||||
Sbjct: 44822 caccatcgtcgtcgccaacc 44841
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>gb|AC090425.15| Homo sapiens 3 BAC RP11-15L13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 97868

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    cgcctcccttcttcctcctg 44
             ||||||||||||||||||||
Sbjct: 38628 cgcctcccttcttcctcctg 38609
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>gb|AC073896.41| Homo sapiens 12 BAC RP11-977G19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 174487

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    gcctcccttcttcctcctgg 45
             ||||||||||||||||||||
Sbjct: 85956 gcctcccttcttcctcctgg 85975
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>ref|XM_215251.3| PREDICTED: Rattus norvegicus zinc finger protein 216 (predicted)
           (Zfp216_predicted), mRNA
          Length = 2949

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 ggcccaccgcccggcgtcgc 363
           ||||||||||||||||||||
Sbjct: 799 ggcccaccgcccggcgtcgc 818
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>ref|NM_001013682.1| Homo sapiens hypothetical gene supported by AK125637 (LOC401280),
           mRNA
          Length = 3837

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  gcgcctcccttcttcctcct 43
           ||||||||||||||||||||
Sbjct: 123 gcgcctcccttcttcctcct 142
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>dbj|AK072066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110H22, full
           insert sequence
          Length = 3498

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 381 ttctcgtgggacgaggactcgctgctcc 408
           |||||||||||||| |||||||| ||||
Sbjct: 470 ttctcgtgggacgacgactcgctcctcc 497
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>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 266   ctcccccgcgtccccctccacgccgtccccggcgcc 301
             |||||||||||||||| || |||||  |||||||||
Sbjct: 57143 ctcccccgcgtcccccgccccgccgcgcccggcgcc 57178
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 236     cgtggtcaccacgccggggc 255
               ||||||||||||||||||||
Sbjct: 2928350 cgtggtcaccacgccggggc 2928369
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 311      caccatcgtcgtcgccaacc 330
                ||||||||||||||||||||
Sbjct: 15335700 caccatcgtcgtcgccaacc 15335719
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>emb|AL772319.13| Mouse DNA sequence from clone RP23-397E2 on chromosome 4, complete
           sequence
          Length = 206709

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 30  cccttcttcctcctggactt 49
           ||||||||||||||||||||
Sbjct: 786 cccttcttcctcctggactt 805
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>gb|BC080270.1| Mus musculus cDNA clone IMAGE:6816490, containing frame-shift
           errors
          Length = 2572

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 ggcccaccgcccggcgtcgc 363
           ||||||||||||||||||||
Sbjct: 393 ggcccaccgcccggcgtcgc 412
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>emb|AL954151.8| Mouse DNA sequence from clone RP24-370P7 on chromosome 4, complete
            sequence
          Length = 3994

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   cccttcttcctcctggactt 49
            ||||||||||||||||||||
Sbjct: 2780 cccttcttcctcctggactt 2799


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,988,971
Number of Sequences: 3902068
Number of extensions: 2988971
Number of successful extensions: 74928
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73595
Number of HSP's gapped (non-prelim): 1333
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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