ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 359 6e-96
2gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 359 6e-96
3dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 359 6e-96
4gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 145 2e-31
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
6dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
7dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
8ref|NM_125572.2| Arabidopsis thaliana nuclease/ nucleic acid bin... 84 5e-13
9ref|NM_120817.2| Arabidopsis thaliana nuclease/ nucleic acid bin... 84 5e-13
10gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence 84 5e-13
11gb|AY064975.1| Arabidopsis thaliana AT5g07350/T2I1_60 mRNA, comp... 84 5e-13
12gb|BT002044.1| Arabidopsis thaliana 100 kDa coactivator - like p... 84 5e-13
13dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 68 3e-08
14gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete se... 66 1e-07
15dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 64 5e-07
16dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, parti... 64 5e-07
17gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complet... 60 7e-06
18emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC... 60 7e-06
19dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone... 52 0.002
20gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 46 0.11
21gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic m... 44 0.42
22dbj|AP000902.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 44 0.42
23gb|AC006494.13| Drosophila melanogaster clone BACR48C17, complet... 42 1.7
24gb|AC008196.8| Drosophila melanogaster clone BACR30J14, complete... 42 1.7
25emb|AJ632310.1| Cotesia congregata virus complete genome, segmen... 42 1.7
26gb|AY651828.1| Cotesia plutellae polydnavirus segment CpBV-S30, ... 42 1.7
27gb|AE003739.3| Drosophila melanogaster chromosome 3R, section 77... 42 1.7
28gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's ... 40 6.6
29gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, com... 40 6.6
30gb|DQ072581.1| Bos taurus pyruvate carboxylase (PC) gene, partia... 40 6.6
31gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 40 6.6
32emb|AL359554.7| Human DNA sequence from clone RP4-639P13 on chro... 40 6.6
33gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cance... 40 6.6
34gb|AC093429.2| Homo sapiens chromosome 1 clone RP11-465K1, compl... 40 6.6
35gb|AC016736.6| Homo sapiens BAC clone RP11-393J17 from 2, comple... 40 6.6
36gb|AC098857.3| Homo sapiens BAC clone RP11-115I12 from 2, comple... 40 6.6
37emb|BX649319.8| Zebrafish DNA sequence from clone DKEYP-88E3 in ... 40 6.6
38gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer... 40 6.6 
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  359 bits (181), Expect = 6e-96
 Identities = 294/331 (88%), Gaps = 3/331 (0%)
 Strand = Plus / Plus

                                                                       
Query: 159 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 218
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                                                                       
Query: 219 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 275
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356

                                                                       
Query: 276 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 335
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416

                                                                       
Query: 336 agggagtttctgaggaaactttgcgtaggaaaggaggtcacattcagagtggattacaca 395
           ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct: 417 agggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacaca 476

                                                                       
Query: 396 gctcctaacatcgggcgagaatttggcactgtctacctcggcgacaagaacgttgcctac 455
           ||||| ||  | || ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 477 gctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctac 536

                                          
Query: 456 ttggtggttgctgcaggatgggcgagggtaa 486
           | | |  |||||||||||||||| |||||||
Sbjct: 537 tcgataattgctgcaggatgggcaagggtaa 567
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>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           mRNA, complete cds
          Length = 2961

 Score =  359 bits (181), Expect = 6e-96
 Identities = 294/331 (88%), Gaps = 3/331 (0%)
 Strand = Plus / Plus

                                                                       
Query: 159 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 218
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 16  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 75

                                                                       
Query: 219 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 275
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 76  atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 135

                                                                       
Query: 276 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 335
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 136 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 195

                                                                       
Query: 336 agggagtttctgaggaaactttgcgtaggaaaggaggtcacattcagagtggattacaca 395
           ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct: 196 agggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacaca 255

                                                                       
Query: 396 gctcctaacatcgggcgagaatttggcactgtctacctcggcgacaagaacgttgcctac 455
           ||||| ||  | || ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 256 gctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctac 315

                                          
Query: 456 ttggtggttgctgcaggatgggcgagggtaa 486
           | | |  |||||||||||||||| |||||||
Sbjct: 316 tcgataattgctgcaggatgggcaagggtaa 346
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>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
           insert sequence
          Length = 3547

 Score =  359 bits (181), Expect = 6e-96
 Identities = 294/331 (88%), Gaps = 3/331 (0%)
 Strand = Plus / Plus

                                                                       
Query: 159 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 218
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                                                                       
Query: 219 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 275
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356

                                                                       
Query: 276 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 335
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416

                                                                       
Query: 336 agggagtttctgaggaaactttgcgtaggaaaggaggtcacattcagagtggattacaca 395
           ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct: 417 agggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacaca 476

                                                                       
Query: 396 gctcctaacatcgggcgagaatttggcactgtctacctcggcgacaagaacgttgcctac 455
           ||||| ||  | || ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 477 gctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctac 536

                                          
Query: 456 ttggtggttgctgcaggatgggcgagggtaa 486
           | | |  |||||||||||||||| |||||||
Sbjct: 537 tcgataattgctgcaggatgggcaagggtaa 567
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>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           gene, complete cds
          Length = 5478

 Score =  145 bits (73), Expect = 2e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Plus

                                                                       
Query: 159 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 218
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 45  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 104

                                                                       
Query: 219 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 275
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 105 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 164

                              
Query: 276 cttatggccccaaggctgg 294
           || ||||||||||||||||
Sbjct: 165 ctcatggccccaaggctgg 183



 Score =  119 bits (60), Expect = 9e-24
 Identities = 105/120 (87%)
 Strand = Plus / Plus

                                                                       
Query: 367 aggaggtcacattcagagtggattacacagctcctaacatcgggcgagaatttggcactg 426
           |||||||||||||||||||||| ||||||||||| ||  | || ||||||||||| ||||
Sbjct: 733 aggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactg 792

                                                                       
Query: 427 tctacctcggcgacaagaacgttgcctacttggtggttgctgcaggatgggcgagggtaa 486
           | |||||||| |||||||| |||||||||| | |  |||||||||||||||| |||||||
Sbjct: 793 tttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaa 852



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                       
Query: 293 ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 352
           |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 541 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 600

                            
Query: 353 actttgcgtaggaaagg 369
           ||| ||| |||||||||
Sbjct: 601 actctgcataggaaagg 617
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 2e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                            
Query: 159      ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 218
                ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 19123886 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 19123827

                                                                            
Query: 219      atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 275
                |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 19123826 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 19123767

                                   
Query: 276      cttatggccccaaggctgg 294
                || ||||||||||||||||
Sbjct: 19123766 ctcatggccccaaggctgg 19123748



 Score =  119 bits (60), Expect = 9e-24
 Identities = 105/120 (87%)
 Strand = Plus / Minus

                                                                            
Query: 367      aggaggtcacattcagagtggattacacagctcctaacatcgggcgagaatttggcactg 426
                |||||||||||||||||||||| ||||||||||| ||  | || ||||||||||| ||||
Sbjct: 19123198 aggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactg 19123139

                                                                            
Query: 427      tctacctcggcgacaagaacgttgcctacttggtggttgctgcaggatgggcgagggtaa 486
                | |||||||| |||||||| |||||||||| | |  |||||||||||||||| |||||||
Sbjct: 19123138 tttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaa 19123079



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                            
Query: 293      ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 352
                |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 19123390 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 19123331

                                 
Query: 353      actttgcgtaggaaagg 369
                ||| ||| |||||||||
Sbjct: 19123330 actctgcataggaaagg 19123314
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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  145 bits (73), Expect = 2e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                         
Query: 159   ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 218
             ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 22135 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 22076

                                                                         
Query: 219   atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 275
             |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 22075 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 22016

                                
Query: 276   cttatggccccaaggctgg 294
             || ||||||||||||||||
Sbjct: 22015 ctcatggccccaaggctgg 21997



 Score =  119 bits (60), Expect = 9e-24
 Identities = 105/120 (87%)
 Strand = Plus / Minus

                                                                         
Query: 367   aggaggtcacattcagagtggattacacagctcctaacatcgggcgagaatttggcactg 426
             |||||||||||||||||||||| ||||||||||| ||  | || ||||||||||| ||||
Sbjct: 21447 aggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactg 21388

                                                                         
Query: 427   tctacctcggcgacaagaacgttgcctacttggtggttgctgcaggatgggcgagggtaa 486
             | |||||||| |||||||| |||||||||| | |  |||||||||||||||| |||||||
Sbjct: 21387 tttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaa 21328



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                         
Query: 293   ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 352
             |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 21639 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 21580

                              
Query: 353   actttgcgtaggaaagg 369
             ||| ||| |||||||||
Sbjct: 21579 actctgcataggaaagg 21563
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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  145 bits (73), Expect = 2e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                          
Query: 159    ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 218
              ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 129407 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 129348

                                                                          
Query: 219    atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 275
              |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 129347 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 129288

                                 
Query: 276    cttatggccccaaggctgg 294
              || ||||||||||||||||
Sbjct: 129287 ctcatggccccaaggctgg 129269



 Score =  119 bits (60), Expect = 9e-24
 Identities = 105/120 (87%)
 Strand = Plus / Minus

                                                                          
Query: 367    aggaggtcacattcagagtggattacacagctcctaacatcgggcgagaatttggcactg 426
              |||||||||||||||||||||| ||||||||||| ||  | || ||||||||||| ||||
Sbjct: 128719 aggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactg 128660

                                                                          
Query: 427    tctacctcggcgacaagaacgttgcctacttggtggttgctgcaggatgggcgagggtaa 486
              | |||||||| |||||||| |||||||||| | |  |||||||||||||||| |||||||
Sbjct: 128659 tttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaa 128600



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                          
Query: 293    ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 352
              |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 128911 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 128852

                               
Query: 353    actttgcgtaggaaagg 369
              ||| ||| |||||||||
Sbjct: 128851 actctgcataggaaagg 128835
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>ref|NM_125572.2| Arabidopsis thaliana nuclease/ nucleic acid binding AT5G61780 mRNA,
           complete cds
          Length = 3552

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 312 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 371
           |||||||| ||||| |||||||||||||||||||| ||||| |||||| | |||||||||
Sbjct: 444 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgcattggaaaggag 503

                                 
Query: 372 gtcacattcagagtggattaca 393
           ||  | |||| |||||||||||
Sbjct: 504 gttgctttcaaagtggattaca 525
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>ref|NM_120817.2| Arabidopsis thaliana nuclease/ nucleic acid binding AT5G07350 mRNA,
           complete cds
          Length = 3397

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 312 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 371
           |||||||| ||||| ||||||||||  || ||| |||||||||||||| |||||||||||
Sbjct: 330 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaaaggag 389

                                 
Query: 372 gtcacattcagagtggattaca 393
           ||  |||||| |||||||||||
Sbjct: 390 gttgcattcaaagtggattaca 411
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>gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence
          Length = 3381

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                       
Query: 292 tggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgagga 351
           |||| |||||||||||||| |||||||||||||| ||| ||||||| || ||  ||||||
Sbjct: 319 tggcacgtcgtggtggagtggatgagccatttgcatggcaaagcagagacttcttgagga 378

                                         
Query: 352 aactttgcgtaggaaaggaggtcacattca 381
           | |||||| | |||||||||||||| ||||
Sbjct: 379 agctttgcattggaaaggaggtcactttca 408
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>gb|AY064975.1| Arabidopsis thaliana AT5g07350/T2I1_60 mRNA, complete cds
          Length = 3397

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 312 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 371
           |||||||| ||||| ||||||||||  || ||| |||||||||||||| |||||||||||
Sbjct: 330 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaaaggag 389

                                 
Query: 372 gtcacattcagagtggattaca 393
           ||  |||||| |||||||||||
Sbjct: 390 gttgcattcaaagtggattaca 411
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>gb|BT002044.1| Arabidopsis thaliana 100 kDa coactivator - like protein (At5g61780)
           mRNA, complete cds
          Length = 3538

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 312 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 371
           |||||||| ||||| |||||||||||||||||||| ||||| |||||| | |||||||||
Sbjct: 445 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgcattggaaaggag 504

                                 
Query: 372 gtcacattcagagtggattaca 393
           ||  | |||| |||||||||||
Sbjct: 505 gttgctttcaaagtggattaca 526
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>dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC9
          Length = 57246

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 312   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 369
             |||||||| ||||| |||||||||||||||||||| ||||| |||||| | |||||||
Sbjct: 27733 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgcattggaaagg 27790
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>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence
          Length = 117358

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                          
Query: 293    ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 352
              ||||||| | ||||| |||||||| |||||||| |||||||| || ||||||||||||||
Sbjct: 103351 ggctcgtagaggtggtgtcgatgaaccatttgcatgggaaagtagagagtttctgaggaa 103292

                   
Query: 353    acttt 357
               ||||
Sbjct: 103291 gcttt 103287
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>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
           complete cds
          Length = 3379

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 303 ggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgta 362
           ||||| || |||||| ||||||| |||||||| || |||||||||||||| |||||| | 
Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgaggaagctttgcatt 425

                                           
Query: 363 ggaaaggaggtcacattcagagtggattacac 394
           |||| |||| | || |||||| | ||||||||
Sbjct: 426 ggaagggagattactttcagaattgattacac 457



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 183 aaggtgaaggctgtgacttctggggactgc 212
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
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>dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, partial cds
          Length = 1339

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 303 ggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgta 362
           ||||| || |||||| ||||||| |||||||| || |||||||||||||| |||||| | 
Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgaggaagctttgcatt 425

                                           
Query: 363 ggaaaggaggtcacattcagagtggattacac 394
           |||| |||| | || |||||| | ||||||||
Sbjct: 426 ggaagggagattactttcagaattgattacac 457



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 183 aaggtgaaggctgtgacttctggggactgc 212
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
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>gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complete sequence
          Length = 84869

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 312  gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 369
            |||||||| ||||| |||||||||| ||| ||| |||||||||||||| | |||||||
Sbjct: 8643 gatgagccttttgcatgggaaagcaaggaatttttgaggaaactttgcattggaaagg 8586
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>emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC clone T2I1 (ESSA project)
          Length = 116763

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 312   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 369
             |||||||| ||||| ||||||||||  || ||| |||||||||||||| |||||||||
Sbjct: 39695 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaaagg 39638
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>dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10J03, TM0094a,
             complete sequence
          Length = 65557

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 312   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 369
             ||||| |||||||| ||||||||||| |||| ||||||||| || ||| |||| ||||
Sbjct: 54104 gatgaaccatttgcatgggaaagcagagagtatctgaggaagctctgcatagggaagg 54047



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 312   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 369
             ||||| |||||||| ||||||||||| |||| ||||||||| || ||| |||| ||||
Sbjct: 38111 gatgaaccatttgcatgggaaagcagagagtatctgaggaagctctgcatagggaagg 38054



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 312   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 369
             ||||| |||||||| ||||||||||| |||| ||||||||| || ||| |||| ||||
Sbjct: 25201 gatgaaccatttgcatgggaaagcagagagtatctgaggaagctctgcatagggaagg 25144
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 461     ggttgctgcaggatgggcgaggg 483
               |||||||||||||||||||||||
Sbjct: 3586079 ggttgctgcaggatgggcgaggg 3586057
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>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis
             gene cluster, partial sequence
          Length = 103450

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 102   aggcggaggccgctcgccgccg 123
             ||||||||||||||||||||||
Sbjct: 60057 aggcggaggccgctcgccgccg 60036
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>dbj|AP000902.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-692N5, complete
              sequences
          Length = 186626

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 454    acttggtggttgctgcaggatg 475
              ||||||||||||||||||||||
Sbjct: 131118 acttggtggttgctgcaggatg 131139
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>gb|AC006494.13| Drosophila melanogaster clone BACR48C17, complete sequence
          Length = 164501

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 360   gtaggaaaggaggtcacattc 380
             |||||||||||||||||||||
Sbjct: 32370 gtaggaaaggaggtcacattc 32350
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>gb|AC008196.8| Drosophila melanogaster clone BACR30J14, complete sequence
          Length = 179562

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 360   gtaggaaaggaggtcacattc 380
             |||||||||||||||||||||
Sbjct: 85083 gtaggaaaggaggtcacattc 85063
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>emb|AJ632310.1| Cotesia congregata virus complete genome, segment Circle7
          Length = 24748

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 291   ctggctcgtcgtggtggagtc 311
             |||||||||||||||||||||
Sbjct: 16499 ctggctcgtcgtggtggagtc 16519
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>gb|AY651828.1| Cotesia plutellae polydnavirus segment CpBV-S30, complete sequence
          Length = 23535

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   ctggctcgtcgtggtggagtc 311
             |||||||||||||||||||||
Sbjct: 14723 ctggctcgtcgtggtggagtc 14703
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>gb|AE003739.3| Drosophila melanogaster chromosome 3R, section 77 of 118 of the
             complete sequence
          Length = 224856

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 360   gtaggaaaggaggtcacattc 380
             |||||||||||||||||||||
Sbjct: 35197 gtaggaaaggaggtcacattc 35177
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>gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 262323

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   gagtttctgaggaaactttg 358
             ||||||||||||||||||||
Sbjct: 97730 gagtttctgaggaaactttg 97749
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>gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, complete sequence
          Length = 156056

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    ccagagaagtccatcactct 268
              ||||||||||||||||||||
Sbjct: 148918 ccagagaagtccatcactct 148937
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>gb|DQ072581.1| Bos taurus pyruvate carboxylase (PC) gene, partial sequence
          Length = 8390

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 319  catttgcttgggaaagcagg 338
            ||||||||||||||||||||
Sbjct: 7409 catttgcttgggaaagcagg 7428
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>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
             biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   ggcggaggccgctcgccgcc 122
             ||||||||||||||||||||
Sbjct: 32744 ggcggaggccgctcgccgcc 32763
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>emb|AL359554.7| Human DNA sequence from clone RP4-639P13 on chromosome 1p21.3-22.3
             Contains ESTs, STSs, GSSs and a CpG island. Contains part
             of a novel gene for a protein similar to rat
             transporter-like protein (CTL1) and the CNN3 gene for two
             isoforms of acidic calponin 3, complete sequence
          Length = 106277

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 331   aaagcagggagtttctgaggaaac 354
             |||||||| |||||||||||||||
Sbjct: 27652 aaagcaggcagtttctgaggaaac 27629
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>gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 254457

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   ccagagaagtccatcactct 268
             ||||||||||||||||||||
Sbjct: 18393 ccagagaagtccatcactct 18374
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>gb|AC093429.2| Homo sapiens chromosome 1 clone RP11-465K1, complete sequence
          Length = 182165

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 331   aaagcagggagtttctgaggaaac 354
             |||||||| |||||||||||||||
Sbjct: 56221 aaagcaggcagtttctgaggaaac 56244
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>gb|AC016736.6| Homo sapiens BAC clone RP11-393J17 from 2, complete sequence
          Length = 149884

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    ggtggttgctgcaggatggg 477
              ||||||||||||||||||||
Sbjct: 143949 ggtggttgctgcaggatggg 143930
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>gb|AC098857.3| Homo sapiens BAC clone RP11-115I12 from 2, complete sequence
          Length = 80506

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   agtttctgaggaaactttgc 359
             ||||||||||||||||||||
Sbjct: 33555 agtttctgaggaaactttgc 33536
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>emb|BX649319.8| Zebrafish DNA sequence from clone DKEYP-88E3 in linkage group 20,
           complete sequence
          Length = 108164

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 331 aaagcagggagtttctgagg 350
           ||||||||||||||||||||
Sbjct: 303 aaagcagggagtttctgagg 284
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>gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208717

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   ccagagaagtccatcactct 268
             ||||||||||||||||||||
Sbjct: 66033 ccagagaagtccatcactct 66052


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,992,444
Number of Sequences: 3902068
Number of extensions: 3992444
Number of successful extensions: 76712
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76524
Number of HSP's gapped (non-prelim): 184
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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