ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56a03 |
|---|---|
| Clone Library Name | barley_pub |
>RRPL_DUGBV (Q66431) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)| Length = 4036 Score = 32.0 bits (71), Expect = 0.79 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = +2 Query: 341 TDIKRTVDPDKVCIEDKLEASTRSSLSSKSD 433 +D KRT++ D +C+ED L++ +S SSKSD Sbjct: 3988 SDSKRTLEDDALCLEDLLDSDNEAS-SSKSD 4017
>RGS12_HUMAN (O14924) Regulator of G-protein signaling 12 (RGS12)| Length = 1447 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = -1 Query: 93 GSGEWDGTGGRLAE-WTGIYPAPFCSAP 13 G WDG GGR A+ W + PFC P Sbjct: 453 GGSAWDGVGGRGAQPWGAPWTGPFCPDP 480
>ATPG_SPIPL (P50006) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 310 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = +3 Query: 291 RSLTELTEKILLFVEAGQISREPLILIKFV*RINWRPVLGVL 416 + ++ T++IL + E+G + R LI KFV I+ RPV L Sbjct: 148 QEVSSATDEILAWFESGAVDRVELIYTKFVSLISSRPVTQTL 189
>IGJ_MOUSE (P01592) Immunoglobulin J chain precursor| Length = 159 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Frame = +2 Query: 320 SPVRRG----RTDIKRTVDPDKVCIEDKLEASTRSSLSSKSDASPMKSY 454 SP+RR +D+ + DP +V +ED++ +T+S++ ++ D P Y Sbjct: 76 SPLRRNFVYHLSDVCKKCDPVEVELEDQVVTATQSNICNEDDGVPETCY 124
>RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1 papain-like cysteine proteinase (EC 3.4.22.-) (PCP); Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP); Nonstructural protein Length = 3175 Score = 29.6 bits (65), Expect = 3.9 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +2 Query: 275 MASTKALADRTHREDSPVRRGRTDIKRTVDPDKVCIEDKLEASTRSS 415 ++ A + ++ SP+ G++ PDK C+E LE+ RS+ Sbjct: 2084 LSGVTAAFQKAGKDGSPIYLGKSKFDPIPAPDKYCLETDLESCDRST 2130
>SALM_DROME (P39770) Homeotic protein spalt-major| Length = 1365 Score = 29.3 bits (64), Expect = 5.1 Identities = 16/53 (30%), Positives = 22/53 (41%) Frame = +3 Query: 12 TGQNRRELGKFRSIPPTSLPSRPIRRSHCTLRLLAQWY*LAAPPPAAGQCSPP 170 + +R L K + + P SLP P SH + +L PP C PP Sbjct: 1094 SSSSRSPLPKEKPVSPPSLPRSPSGSSHASANILTS----PLPPTVGIDCLPP 1142
>HSLV_XANCP (Q8P551) ATP-dependent protease hslV (EC 3.4.25.-)| Length = 183 Score = 29.3 bits (64), Expect = 5.1 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = -3 Query: 217 SKHHNISKDTGFLRGSGGEHWPAAGGGAAS*YHCASSRSVQWERRMGRDGREVGG 53 S++ N+ T + G H AG G + H + + RR+GRDG+ + G Sbjct: 4 SQNPNVVHATTIISVRRGGHVAVAGDGQVTLGHTVMKGNARKVRRLGRDGQVLAG 58
>CU030_HUMAN (Q9UFM2) Putative protein C21orf30| Length = 244 Score = 28.9 bits (63), Expect = 6.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 92 GAANGTGREGGWRNGPEFTQLPS 24 GA +G R+ GWR+ PE T LP+ Sbjct: 97 GAHDGHLRKEGWRSTPEMTSLPA 119
>LGUL_HAEIN (P44638) Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase)| (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D-lactoylglutathione methylglyoxal lyase) Length = 135 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/67 (29%), Positives = 29/67 (43%) Frame = +2 Query: 224 GSSEKKTMINLFDLSTGMASTKALADRTHREDSPVRRGRTDIKRTVDPDKVCIEDKLEAS 403 G++ I + D+ + +A RE PV+ G T I DPD IE S Sbjct: 69 GTAYGHIAIGVDDIYATCEAVRASGGNVTREAGPVKGGSTVIAFVEDPDGYKIEFIENKS 128 Query: 404 TRSSLSS 424 T+S L + Sbjct: 129 TKSGLGN 135
>PACS1_HUMAN (Q6VY07) Phosphofurin acidic cluster sorting protein 1 (PACS-1)| Length = 963 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/64 (28%), Positives = 25/64 (39%) Frame = -1 Query: 219 PPSITTSAKIRDSYXXXXXXXXXXXXAEQRASTTAQAVAVCSGSGEWDGTGGRLAEWTGI 40 PP T K+ + + +++T+ AVAV SGS G G G Sbjct: 41 PPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPG------PGR 94 Query: 39 YPAP 28 PAP Sbjct: 95 TPAP 98
>DNJC9_HUMAN (Q8WXX5) DnaJ homolog subfamily C member 9 (DnaJ protein SB73)| Length = 260 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +2 Query: 287 KALADRTHREDSPVRRGRTDIKRTVDPDKVCIEDKLEASTRSSLSSK 427 + L R D VRRG + V PD+V DK +A+ R + K Sbjct: 18 RVLGVRREASDGEVRRGYHKVSLQVHPDRVGEGDKEDATRRFQILGK 64
>FBXL2_MOUSE (Q8BH16) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) Length = 423 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -3 Query: 355 SLDICPASTNRRIFSVSSVSERLRAGHPRTQVEQVDHCLLLT 230 SL C T+ I +SS + GH R +V ++D+CLL+T Sbjct: 318 SLSHCELITDEGILHLSSST----CGHERLRVLELDNCLLVT 355
>AEX3_CAEEL (O02626) Regulator of presynaptic activity aex-3 (Aboc, expulsion| defective protein 3) Length = 1409 Score = 28.5 bits (62), Expect = 8.7 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +3 Query: 132 AAPPPAAGQCSPPLPRRNP 188 A PPP + +PP+P+RNP Sbjct: 963 ALPPPVPPREAPPIPKRNP 981 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,988,984 Number of Sequences: 219361 Number of extensions: 1183862 Number of successful extensions: 4289 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4017 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4286 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
