ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl55h12 |
|---|---|
| Clone Library Name | barley_pub |
>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) Length = 908 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/39 (51%), Positives = 29/39 (74%) Frame = +2 Query: 290 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVP 406 +LE+ V R + D + R ALE +R++IRS+T+SMTSVP Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVP 93
>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) (Tumor necrosis factor type 1 receptor-associated protein 2) (55.11 protein) Length = 908 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/39 (51%), Positives = 29/39 (74%) Frame = +2 Query: 290 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVP 406 +LE+ V R + D + R ALE +R++IRS+T+SMTSVP Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVP 93
>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome| non-ATPase subunit 1) Length = 992 Score = 34.3 bits (77), Expect = 0.072 Identities = 15/38 (39%), Positives = 27/38 (71%) Frame = +2 Query: 293 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVP 406 LEL V R ++ D + +L ++++ I+++TSSMT+VP Sbjct: 48 LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVP 85
>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome| non-ATPase subunit mts4) (19S regulatory cap region of 26S protease subunit 2) Length = 891 Score = 33.9 bits (76), Expect = 0.095 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = +2 Query: 293 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVP 406 LEL V QD P + +L +++ IR++TSSMT+VP Sbjct: 57 LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVP 94
>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1| Length = 883 Score = 32.0 bits (71), Expect = 0.36 Identities = 14/30 (46%), Positives = 23/30 (76%) Frame = +2 Query: 317 QDVDPGVQRLALESMRQEIRSATSSMTSVP 406 Q+ D + + ALE+M+ I+++TSSMT+VP Sbjct: 48 QESDATLYKPALEAMKNSIKTSTSSMTAVP 77
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 30.4 bits (67), Expect = 1.0 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1 Query: 16 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126 S ++ P ++ +A VPLAP +PP+P+P R A Sbjct: 1123 SDKEAPPPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159
>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14)| (Phosphorylethanolamine transferase) (CTP:phosphoethanolamine cytidylyltransferase) Length = 404 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -1 Query: 116 IRFGDGAGGLARVRGASGTEATRRCCVGVY 27 IR G GAGG A ++G G R C G Y Sbjct: 2 IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31
>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2| Length = 640 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +1 Query: 34 PTQQRRVASVPLAPRTLASP-PAPSPNRIRPASH 132 PT ++ A +PL P A P P P P+ P SH Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +1 Query: 16 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126 S R+ +P QRR + P R ASPP P R P+ Sbjct: 611 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 647
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +1 Query: 16 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126 S R+ +P QRR + P R ASPP P R P+ Sbjct: 606 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 642 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +1 Query: 7 KRRSSRK*TPTQQRRVASVPLAPRTLASPP---APSPNRIRP 123 +RRS P ++RR + P RT + PP +PSP R P Sbjct: 571 RRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSP 612
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +1 Query: 16 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126 S R+ +P QRR + P R ASPP P R P+ Sbjct: 592 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 628 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +1 Query: 7 KRRSSRK*TPTQQRRVASVPLAPRTLASPP---APSPNRIRP 123 +RRS P ++RR + P RT + PP +PSP R P Sbjct: 557 RRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSP 598
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +1 Query: 16 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126 S R+ +P QRR + P R ASPP P R P+ Sbjct: 585 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 621
>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4| Length = 376 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = +1 Query: 34 PTQQRRVASVPLAPRTLASPPAP--SPNRIRPAS 129 PTQQ +VP AP +S PAP SPN I P++ Sbjct: 15 PTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSN 48
>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum| protein MSE55) Length = 391 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +1 Query: 13 RSSRK*TPTQQRRVASVPLAPRTLASPPAPSP 108 RS R + + V V PR +ASPPAPSP Sbjct: 76 RSPRSFLAKKLQLVRRVGAPPRRMASPPAPSP 107
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +1 Query: 16 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126 S ++ P ++ + VPLAP +PP+P+P R A Sbjct: 1118 SDKEAPPPKEGVLGQVPLAPPQPGAPPSPAPARFSTA 1154
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +1 Query: 16 SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNR 114 S ++ P ++ + VPLAP +PP+P+P R Sbjct: 1123 SDKEAPPPKEGTLTQVPLAPPPPGAPPSPAPAR 1155
>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1280 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 3 SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 98 +K L+ + P A +R TTR P P++PAS Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157
>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1281 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 3 SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 98 +K L+ + P A +R TTR P P++PAS Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157
>DYNA_HUMAN (Q14203) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) (p135) Length = 1278 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 3 SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 98 +K L+ + P A +R TTR P P++PAS Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157
>PHF1_HUMAN (O43189) PHD finger protein 1 (PHF1 protein)| Length = 567 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 34 PTQQRRVASVPLAPRTLASPPAPSPNR 114 P +QR A + A + SPP+PSPN+ Sbjct: 399 PQEQRERAHLQRALQASVSPPSPSPNQ 425
>CHS4_NEUCR (Q01285) Chitin synthase 4 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 4) (Class-IV chitin synthase 4) Length = 1195 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 34 PTQQRRVASVPLAPRTLASPPAPSPN 111 P+QQ+RV S+ P TL P+P+PN Sbjct: 6 PSQQQRVPSISSFPETL---PSPNPN 28
>BORG5_MOUSE (Q91W92) Cdc42 effector protein 1 (Binder of Rho GTPases 5)| Length = 409 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 13 RSSRK*TPTQQRRVASVPLAPRTLASPPAPSP 108 RS R + ++V V + PR +ASP APSP Sbjct: 76 RSPRSFLARKLQQVRRVGVPPRRMASPAAPSP 107
>YACF_SALTY (P67693) UPF0289 protein yacF| Length = 247 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +2 Query: 329 PGVQRLALESMRQEIRSATSSMTSVP 406 PGV + +E++RQ+++SA S + S P Sbjct: 81 PGVDQDRIEALRQQLKSAGSVLISAP 106
>YACF_SALTI (P67694) UPF0289 protein yacF| Length = 247 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +2 Query: 329 PGVQRLALESMRQEIRSATSSMTSVP 406 PGV + +E++RQ+++SA S + S P Sbjct: 81 PGVDQDRIEALRQQLKSAGSVLISAP 106
>YACF_SALPA (Q5PDD7) UPF0289 protein yacF| Length = 247 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +2 Query: 329 PGVQRLALESMRQEIRSATSSMTSVP 406 PGV + +E++RQ+++SA S + S P Sbjct: 81 PGVDQDRIEALRQQLKSAGSVLISAP 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,028,802 Number of Sequences: 219361 Number of extensions: 332279 Number of successful extensions: 2010 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1832 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1995 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
