ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4,... 98 2e-17
2emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4,... 98 2e-17
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
4ref|XM_472685.1| Oryza sativa (japonica cultivar-group), predic... 72 1e-09
5gb|BT018177.1| Zea mays clone EL01N0557F01.c mRNA sequence 44 0.30
6gb|AF263012.1|AF263011S2 Streptomyces griseus subsp. griseus mac... 44 0.30
7gb|AC123613.16| Mus musculus chromosome 1, clone RP23-434L2, com... 40 4.7
8ref|XM_522887.1| PREDICTED: Pan troglodytes KIAA0247 (LOC467490)... 40 4.7
9ref|XM_482866.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
10ref|XM_464059.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
11gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 40 4.7
12ref|XM_588044.2| PREDICTED: Bos taurus similar to Protein KIAA02... 40 4.7
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
15dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
16dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
17dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
18dbj|AK073353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
19gb|U85708.1|ANU85708 Actinomyces naeslundii putative fimbrial-as... 40 4.7
20gb|M21747.1|RABPGT Rabbit glucose transporter mRNA, complete cds 40 4.7

>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
              complete sequence
          Length = 175698

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 86/97 (88%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                          
Query: 262    ccggcgaaacctagggtt-cggcgacaggatgcagaagctggggctctcggggctcaggg 320
              |||||||| ||||||||| || |||||||||||||||||||||  | |||||||| ||||
Sbjct: 161831 ccggcgaaccctagggtttcgacgacaggatgcagaagctgggtttatcggggcttaggg 161890

                                                   
Query: 321    gcctcgatgggttccgatctctcgctggcgccacctc 357
              | ||||| ||||||||||||||||||||  |||||||
Sbjct: 161891 gtctcgaggggttccgatctctcgctggatccacctc 161927



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>emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027G07,
           complete sequence
          Length = 179021

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 86/97 (88%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                       
Query: 262 ccggcgaaacctagggtt-cggcgacaggatgcagaagctggggctctcggggctcaggg 320
           |||||||| ||||||||| || |||||||||||||||||||||  | |||||||| ||||
Sbjct: 176 ccggcgaaccctagggtttcgacgacaggatgcagaagctgggtttatcggggcttaggg 235

                                                
Query: 321 gcctcgatgggttccgatctctcgctggcgccacctc 357
           | ||||| ||||||||||||||||||||  |||||||
Sbjct: 236 gtctcgaggggttccgatctctcgctggatccacctc 272



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 86/97 (88%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                            
Query: 262      ccggcgaaacctagggtt-cggcgacaggatgcagaagctggggctctcggggctcaggg 320
                |||||||| ||||||||| || |||||||||||||||||||||  | |||||||| ||||
Sbjct: 22558076 ccggcgaaccctagggtttcgacgacaggatgcagaagctgggtttatcggggcttaggg 22558135

                                                     
Query: 321      gcctcgatgggttccgatctctcgctggcgccacctc 357
                | ||||| ||||||||||||||||||||  |||||||
Sbjct: 22558136 gtctcgaggggttccgatctctcgctggatccacctc 22558172



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>ref|XM_472685.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2763

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                       
Query: 290 atgcagaagctggggctctcggggctcaggggcctcgatgggttccgatctctcgctggc 349
           ||||||||||||||  | |||||||| ||||| ||||| |||||||||||||||||||| 
Sbjct: 1   atgcagaagctgggtttatcggggcttaggggtctcgaggggttccgatctctcgctgga 60

                   
Query: 350 gccacctc 357
            |||||||
Sbjct: 61  tccacctc 68



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>gb|BT018177.1| Zea mays clone EL01N0557F01.c mRNA sequence
          Length = 1291

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 163 cgcctccgccgtcgccgttcccgtcctacccctcaccg 200
           |||||||||||| |||| || ||||| |||||||||||
Sbjct: 44  cgcctccgccgttgccgctctcgtcccacccctcaccg 81



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>gb|AF263012.1|AF263011S2 Streptomyces griseus subsp. griseus macrotetrolide biosynthesis gene
            cluster, downstream region
          Length = 10029

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 71   tcgtccccgtcgccgcctcacc 92
            ||||||||||||||||||||||
Sbjct: 1594 tcgtccccgtcgccgcctcacc 1573



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>gb|AC123613.16| Mus musculus chromosome 1, clone RP23-434L2, complete sequence
          Length = 204785

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   gacaggatgcagaagctggg 303
             ||||||||||||||||||||
Sbjct: 75127 gacaggatgcagaagctggg 75108



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>ref|XM_522887.1| PREDICTED: Pan troglodytes KIAA0247 (LOC467490), mRNA
          Length = 1377

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 299 ctggggctctcggggctcag 318
           ||||||||||||||||||||
Sbjct: 723 ctggggctctcggggctcag 742



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>ref|XM_482866.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 411

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 gtcgcctccgccgtcgccgt 180
           ||||||||||||||||||||
Sbjct: 299 gtcgcctccgccgtcgccgt 280



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>ref|XM_464059.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1722

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 162 tcgcctccgccgtcgccgttcccgtcct 189
           |||||||||||||||||||  |||||||
Sbjct: 60  tcgcctccgccgtcgccgtcgccgtcct 87



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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    gctgccgccgtcgacgtgcc 53
             ||||||||||||||||||||
Sbjct: 16896 gctgccgccgtcgacgtgcc 16877



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>ref|XM_588044.2| PREDICTED: Bos taurus similar to Protein KIAA0247 precursor
           (LOC510837), mRNA
          Length = 1088

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 299 ctggggctctcggggctcag 318
           ||||||||||||||||||||
Sbjct: 786 ctggggctctcggggctcag 805



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 161      gtcgcctccgccgtcgccgt 180
                ||||||||||||||||||||
Sbjct: 23042806 gtcgcctccgccgtcgccgt 23042825



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 162     tcgcctccgccgtcgccgttcccgtcct 189
               |||||||||||||||||||  |||||||
Sbjct: 1967790 tcgcctccgccgtcgccgtcgccgtcct 1967817



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>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 162   tcgcctccgccgtcgccgttcccgtcct 189
             |||||||||||||||||||  |||||||
Sbjct: 17998 tcgcctccgccgtcgccgtcgccgtcct 18025



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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0081C13
          Length = 144624

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 162    tcgcctccgccgtcgccgttcccgtcct 189
              |||||||||||||||||||  |||||||
Sbjct: 107351 tcgcctccgccgtcgccgtcgccgtcct 107378



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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    gtcgcctccgccgtcgccgt 180
              ||||||||||||||||||||
Sbjct: 102534 gtcgcctccgccgtcgccgt 102553



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>dbj|AK073353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025E21, full
           insert sequence
          Length = 1721

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 162 tcgcctccgccgtcgccgttcccgtcct 189
           |||||||||||||||||||  |||||||
Sbjct: 59  tcgcctccgccgtcgccgtcgccgtcct 86



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>gb|U85708.1|ANU85708 Actinomyces naeslundii putative fimbrial-associated protein genes,
            complete cds
          Length = 4954

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 26   ggcctggtgctgccgccgtcgacg 49
            ||||||| ||||||||||||||||
Sbjct: 2122 ggcctggcgctgccgccgtcgacg 2099



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>gb|M21747.1|RABPGT Rabbit glucose transporter mRNA, complete cds
          Length = 2487

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 295 gaagctggggctctcggggctcaggggc 322
           ||||| |||||||||||||| |||||||
Sbjct: 762 gaagcgggggctctcggggcacaggggc 735


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,651,054
Number of Sequences: 3902068
Number of extensions: 1651054
Number of successful extensions: 42907
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42721
Number of HSP's gapped (non-prelim): 186
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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