Clone Name | bastl55h11 |
---|---|
Clone Library Name | barley_pub |
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 97.6 bits (49), Expect = 2e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 262 ccggcgaaacctagggtt-cggcgacaggatgcagaagctggggctctcggggctcaggg 320 |||||||| ||||||||| || ||||||||||||||||||||| | |||||||| |||| Sbjct: 161831 ccggcgaaccctagggtttcgacgacaggatgcagaagctgggtttatcggggcttaggg 161890 Query: 321 gcctcgatgggttccgatctctcgctggcgccacctc 357 | ||||| |||||||||||||||||||| ||||||| Sbjct: 161891 gtctcgaggggttccgatctctcgctggatccacctc 161927
>emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027G07, complete sequence Length = 179021 Score = 97.6 bits (49), Expect = 2e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 262 ccggcgaaacctagggtt-cggcgacaggatgcagaagctggggctctcggggctcaggg 320 |||||||| ||||||||| || ||||||||||||||||||||| | |||||||| |||| Sbjct: 176 ccggcgaaccctagggtttcgacgacaggatgcagaagctgggtttatcggggcttaggg 235 Query: 321 gcctcgatgggttccgatctctcgctggcgccacctc 357 | ||||| |||||||||||||||||||| ||||||| Sbjct: 236 gtctcgaggggttccgatctctcgctggatccacctc 272
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 97.6 bits (49), Expect = 2e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 262 ccggcgaaacctagggtt-cggcgacaggatgcagaagctggggctctcggggctcaggg 320 |||||||| ||||||||| || ||||||||||||||||||||| | |||||||| |||| Sbjct: 22558076 ccggcgaaccctagggtttcgacgacaggatgcagaagctgggtttatcggggcttaggg 22558135 Query: 321 gcctcgatgggttccgatctctcgctggcgccacctc 357 | ||||| |||||||||||||||||||| ||||||| Sbjct: 22558136 gtctcgaggggttccgatctctcgctggatccacctc 22558172
>ref|XM_472685.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2763 Score = 71.9 bits (36), Expect = 1e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 290 atgcagaagctggggctctcggggctcaggggcctcgatgggttccgatctctcgctggc 349 |||||||||||||| | |||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 1 atgcagaagctgggtttatcggggcttaggggtctcgaggggttccgatctctcgctgga 60 Query: 350 gccacctc 357 ||||||| Sbjct: 61 tccacctc 68
>gb|BT018177.1| Zea mays clone EL01N0557F01.c mRNA sequence Length = 1291 Score = 44.1 bits (22), Expect = 0.30 Identities = 34/38 (89%) Strand = Plus / Plus Query: 163 cgcctccgccgtcgccgttcccgtcctacccctcaccg 200 |||||||||||| |||| || ||||| ||||||||||| Sbjct: 44 cgcctccgccgttgccgctctcgtcccacccctcaccg 81
>gb|AF263012.1|AF263011S2 Streptomyces griseus subsp. griseus macrotetrolide biosynthesis gene cluster, downstream region Length = 10029 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 71 tcgtccccgtcgccgcctcacc 92 |||||||||||||||||||||| Sbjct: 1594 tcgtccccgtcgccgcctcacc 1573
>gb|AC123613.16| Mus musculus chromosome 1, clone RP23-434L2, complete sequence Length = 204785 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gacaggatgcagaagctggg 303 |||||||||||||||||||| Sbjct: 75127 gacaggatgcagaagctggg 75108
>ref|XM_522887.1| PREDICTED: Pan troglodytes KIAA0247 (LOC467490), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ctggggctctcggggctcag 318 |||||||||||||||||||| Sbjct: 723 ctggggctctcggggctcag 742
>ref|XM_482866.1| Oryza sativa (japonica cultivar-group), mRNA Length = 411 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gtcgcctccgccgtcgccgt 180 |||||||||||||||||||| Sbjct: 299 gtcgcctccgccgtcgccgt 280
>ref|XM_464059.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1722 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 162 tcgcctccgccgtcgccgttcccgtcct 189 ||||||||||||||||||| ||||||| Sbjct: 60 tcgcctccgccgtcgccgtcgccgtcct 87
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 gctgccgccgtcgacgtgcc 53 |||||||||||||||||||| Sbjct: 16896 gctgccgccgtcgacgtgcc 16877
>ref|XM_588044.2| PREDICTED: Bos taurus similar to Protein KIAA0247 precursor (LOC510837), mRNA Length = 1088 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ctggggctctcggggctcag 318 |||||||||||||||||||| Sbjct: 786 ctggggctctcggggctcag 805
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 gtcgcctccgccgtcgccgt 180 |||||||||||||||||||| Sbjct: 23042806 gtcgcctccgccgtcgccgt 23042825
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 162 tcgcctccgccgtcgccgttcccgtcct 189 ||||||||||||||||||| ||||||| Sbjct: 1967790 tcgcctccgccgtcgccgtcgccgtcct 1967817
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 162 tcgcctccgccgtcgccgttcccgtcct 189 ||||||||||||||||||| ||||||| Sbjct: 17998 tcgcctccgccgtcgccgtcgccgtcct 18025
>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13 Length = 144624 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 162 tcgcctccgccgtcgccgttcccgtcct 189 ||||||||||||||||||| ||||||| Sbjct: 107351 tcgcctccgccgtcgccgtcgccgtcct 107378
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470B03 Length = 163371 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 gtcgcctccgccgtcgccgt 180 |||||||||||||||||||| Sbjct: 102534 gtcgcctccgccgtcgccgt 102553
>dbj|AK073353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025E21, full insert sequence Length = 1721 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 162 tcgcctccgccgtcgccgttcccgtcct 189 ||||||||||||||||||| ||||||| Sbjct: 59 tcgcctccgccgtcgccgtcgccgtcct 86
>gb|U85708.1|ANU85708 Actinomyces naeslundii putative fimbrial-associated protein genes, complete cds Length = 4954 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 ggcctggtgctgccgccgtcgacg 49 ||||||| |||||||||||||||| Sbjct: 2122 ggcctggcgctgccgccgtcgacg 2099
>gb|M21747.1|RABPGT Rabbit glucose transporter mRNA, complete cds Length = 2487 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 295 gaagctggggctctcggggctcaggggc 322 ||||| |||||||||||||| ||||||| Sbjct: 762 gaagcgggggctctcggggcacaggggc 735 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,651,054 Number of Sequences: 3902068 Number of extensions: 1651054 Number of successful extensions: 42907 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42721 Number of HSP's gapped (non-prelim): 186 length of query: 357 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 335 effective length of database: 17,147,199,772 effective search space: 5744311923620 effective search space used: 5744311923620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)