ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VC04_VARV (P34012) Protein C4 30 2.7
2KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-ass... 30 3.5

>VC04_VARV (P34012) Protein C4|
          Length = 316

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 304 FN*NKWWDNMVDMKTDHIFEVPDTPD 381
           F  N  +D+  D+  DHIFE+PDT +
Sbjct: 211 FRKNHIYDSFADLCMDHIFELPDTEE 236



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>KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-associated protein|
           1.1) (High sulfur keratin-associated protein 1.1)
           (Keratin-associated protein 1.6) (Keratin-associated
           protein 1.7)
          Length = 177

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 382 GQECQEPQKCDQSSCQPYCPTT 317
           G  C +P  C+ SSCQP C  T
Sbjct: 21  GSSCCQPSCCETSSCQPRCCET 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,922,383
Number of Sequences: 219361
Number of extensions: 795622
Number of successful extensions: 2926
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2924
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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