>ref|XM_473145.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2193

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                       
Query: 331 atggttgacatgaagactgatcacatttttgaggttcctgacactcctgaccgaatacag 390
           ||||||||||| ||  |||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 1   atggttgacataaaccctgatcacatctttgaggttccggacacccctgaccgaatacag 60

                                             
Query: 391 cagtcagtgtgccctgtatcaagctcagctgcta 424
           ||||||   ||||||||||| ||| |||||||||
Sbjct: 61  cagtcaacatgccctgtatctagcccagctgcta 94

>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
             complete sequence
          Length = 158601

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                         
Query: 331   atggttgacatgaagactgatcacatttttgaggttcctgacactcctgaccgaatacag 390
             ||||||||||| ||  |||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 37829 atggttgacataaaccctgatcacatctttgaggttccggacacccctgaccgaatacag 37770

                                               
Query: 391   cagtcagtgtgccctgtatcaagctcagctgcta 424
             ||||||   ||||||||||| ||| |||||||||
Sbjct: 37769 cagtcaacatgccctgtatctagcccagctgcta 37736

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                            
Query: 331      atggttgacatgaagactgatcacatttttgaggttcctgacactcctgaccgaatacag 390
                ||||||||||| ||  |||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 25551632 atggttgacataaaccctgatcacatctttgaggttccggacacccctgaccgaatacag 25551573

                                                  
Query: 391      cagtcagtgtgccctgtatcaagctcagctgcta 424
                ||||||   ||||||||||| ||| |||||||||
Sbjct: 25551572 cagtcaacatgccctgtatctagcccagctgcta 25551539



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     gccatcgcgtcaccgctgtc 204
               ||||||||||||||||||||
Sbjct: 2873550 gccatcgcgtcaccgctgtc 2873531

>dbj|AK073609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048J15, full
           insert sequence
          Length = 2753

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                       
Query: 331 atggttgacatgaagactgatcacatttttgaggttcctgacactcctgaccgaatacag 390
           ||||||||||| ||  |||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 302 atggttgacataaaccctgatcacatctttgaggttccggacacccctgaccgaatacag 361

                                             
Query: 391 cagtcagtgtgccctgtatcaagctcagctgcta 424
           ||||||   ||||||||||| ||| |||||||||
Sbjct: 362 cagtcaacatgccctgtatctagcccagctgcta 395

>dbj|AK067002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B14, full
            insert sequence
          Length = 3674

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                        
Query: 331  atggttgacatgaagactgatcacatttttgaggttcctgacactcctgaccgaatacag 390
            ||||||||||| ||  |||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 1237 atggttgacataaaccctgatcacatctttgaggttccggacacccctgaccgaatacag 1296

                                              
Query: 391  cagtcagtgtgccctgtatcaagctcagctgcta 424
            ||||||   ||||||||||| ||| |||||||||
Sbjct: 1297 cagtcaacatgccctgtatctagcccagctgcta 1330

>gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV,
             complete sequence
          Length = 202301

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    ccgacgcgccctccgcgtccg 108
             |||||||||||||||||||||
Sbjct: 68876 ccgacgcgccctccgcgtccg 68856

>emb|AL355316.12| Human DNA sequence from clone RP11-82L9 on chromosome 10 Contains the 3'
              end of the DOCK1 gene for dedicator of cyto-kinesis 1,
              complete sequence
          Length = 142638

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 357    ttttgaggttcctgacactcc 377
              |||||||||||||||||||||
Sbjct: 104971 ttttgaggttcctgacactcc 104991

>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    aataagtggtgggacaatat 332
              ||||||||||||||||||||
Sbjct: 800360 aataagtggtgggacaatat 800379

>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03,
             complete sequence
          Length = 121466

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    gttgccgttgccgacgcgcc 97
             ||||||||||||||||||||
Sbjct: 71231 gttgccgttgccgacgcgcc 71212

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     tcgcgcaccgcggccatcgc 192
               ||||||||||||||||||||
Sbjct: 3229453 tcgcgcaccgcggccatcgc 3229472

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 172     ctcgcgcaccgcggccatcgcgtc 195
               |||||||| |||||||||||||||
Sbjct: 1258708 ctcgcgcagcgcggccatcgcgtc 1258685

>ref|XM_985398.1| PREDICTED: Mus musculus hypothetical protein LOC675820 (LOC675820),
           mRNA
          Length = 783

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 95  gccctccgcgtccgcggccaccaa 118
           |||||||||| |||||||||||||
Sbjct: 578 gccctccgcgcccgcggccaccaa 555

>ref|XM_001000756.1| PREDICTED: Mus musculus hypothetical protein LOC672717 (LOC672717),
           mRNA
          Length = 750

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 95  gccctccgcgtccgcggccaccaa 118
           |||||||||| |||||||||||||
Sbjct: 275 gccctccgcgcccgcggccaccaa 298

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 183     cggccatcgcgtcaccgctg 202
               ||||||||||||||||||||
Sbjct: 1441974 cggccatcgcgtcaccgctg 1441993

>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13
          Length = 348676

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    tcgcgcaccgcggccatcgc 192
              ||||||||||||||||||||
Sbjct: 116095 tcgcgcaccgcggccatcgc 116114

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 172     ctcgcgcaccgcggccatcgcgtc 195
               |||||||| |||||||||||||||
Sbjct: 2574731 ctcgcgcagcgcggccatcgcgtc 2574708

>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             11/14
          Length = 318050

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   tcgcgcaccgcggccatcgc 192
             ||||||||||||||||||||
Sbjct: 66760 tcgcgcaccgcggccatcgc 66779

>emb|AJ414609.1|MTU414609 Mycobacterium tuberculosis smc gene
          Length = 3618

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  tcgcgcaccgcggccatcgc 192
            ||||||||||||||||||||
Sbjct: 2675 tcgcgcaccgcggccatcgc 2656

>gb|AC097366.6| Genomic sequence for Mus musculus, clone RP23-81M23, from chromosome
             17, complete sequence
          Length = 183518

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   agcagtcagtgtgccctgta 408
             ||||||||||||||||||||
Sbjct: 48683 agcagtcagtgtgccctgta 48664

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 172    ctcgcgcaccgcggccatcgcgtc 195
              |||||||| |||||||||||||||
Sbjct: 188210 ctcgcgcagcgcggccatcgcgtc 188233

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 88       ccgacgcgccctccgcgtcc 107
                ||||||||||||||||||||
Sbjct: 24533518 ccgacgcgccctccgcgtcc 24533537

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 78       gttgccgttgccgacgcgcc 97
                ||||||||||||||||||||
Sbjct: 24184993 gttgccgttgccgacgcgcc 24184974

>gb|AC154320.2| Mus musculus BAC clone RP23-308E16 from chromosome 13, complete
             sequence
          Length = 202134

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    gccctccgcgtccgcggccaccaa 118
             |||||||||| |||||||||||||
Sbjct: 97550 gccctccgcgcccgcggccaccaa 97573

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      cgccctccgcgtccgcggcc 113
               ||||||||||||||||||||
Sbjct: 6928759 cgccctccgcgtccgcggcc 6928778

>gb|AC078789.16| Homo sapiens 12 BAC RP11-769N19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 197554

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    gaagactgatcacatttttg 361
              ||||||||||||||||||||
Sbjct: 142711 gaagactgatcacatttttg 142730

>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0026F07
          Length = 137354

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    ccgacgcgccctccgcgtcc 107
             ||||||||||||||||||||
Sbjct: 41778 ccgacgcgccctccgcgtcc 41797

>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1142B04
          Length = 161964

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     ccgacgcgccctccgcgtcc 107
              ||||||||||||||||||||
Sbjct: 149234 ccgacgcgccctccgcgtcc 149253

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 172    ctcgcgcaccgcggccatcgcgtc 195
              |||||||| |||||||||||||||
Sbjct: 567865 ctcgcgcagcgcggccatcgcgtc 567888

>emb|AL663004.3|OSJN00207 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0049I21,
            complete sequence
          Length = 141935

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  gccatcgcgtcaccgctgtc 204
            ||||||||||||||||||||
Sbjct: 5436 gccatcgcgtcaccgctgtc 5417

>gb|AC078872.13| Homo sapiens 12q BAC RP11-542G14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 166585

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   gaagactgatcacatttttg 361
             ||||||||||||||||||||
Sbjct: 24790 gaagactgatcacatttttg 24809

>dbj|AP001184.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-715F10, complete
             sequences
          Length = 120186

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   aatacagcagtcagtgtgcc 403
             ||||||||||||||||||||
Sbjct: 75278 aatacagcagtcagtgtgcc 75259


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,538,905
Number of Sequences: 3902068
Number of extensions: 2538905
Number of successful extensions: 44111
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43691
Number of HSP's gapped (non-prelim): 420
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)