ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALF_ECHMU (Q9GP32) Fructose-bisphosphate aldolase (EC 4.1.2.13) 32 0.87
2NUOG_STRCO (Q9XAR0) NADH-quinone oxidoreductase chain G (EC 1.6.... 28 7.4
3PLDZ1_ARATH (P58766) Phospholipase D zeta (EC 3.1.4.4) (AtPLDzet... 28 7.4
4GYRB_AQUAE (O67137) DNA gyrase subunit B (EC 5.99.1.3) 28 9.7
5ALF_ORYSA (P17784) Fructose-bisphosphate aldolase cytoplasmic is... 28 9.7

>ALF_ECHMU (Q9GP32) Fructose-bisphosphate aldolase (EC 4.1.2.13)|
          Length = 363

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = -2

Query: 169 EPVTRLLPEEGVLPGVK-----TICSGGSESCACEGRDSSARRPVLLLSQYFS 26
           +P   LL E GVLPG+K         G ++ C  +G D+ A+R     +QY++
Sbjct: 92  KPFVELLRERGVLPGIKVDLGVVPLGGTADECTTQGLDNLAQR----CAQYYN 140



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>NUOG_STRCO (Q9XAR0) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain G) (NDH-1, chain G)
          Length = 843

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 216 DSAGQKMGCTVSLRLEKR--LTI*VTCRTSMILRALLLS*TEPLVEHGILVLLVTDDP 383
           D AG    C V +  +++   +  +TC   M+++  L S      +HG++ LL+ + P
Sbjct: 60  DPAGACRQCIVEVEGQRKPMASCTITCTDGMVVKTQLTSPVAEKAQHGVMELLLINHP 117



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>PLDZ1_ARATH (P58766) Phospholipase D zeta (EC 3.1.4.4) (AtPLDzeta) (PLD zeta)|
          Length = 820

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 27  EKYWERSSTGRRAELSLPSHAQLSDPPLQIV 119
           E+ W +  +GRR  +S+   A+++ PPL IV
Sbjct: 430 EQRWMKQGSGRRYLISMAQLAEITVPPLPIV 460



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>GYRB_AQUAE (O67137) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 792

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -2

Query: 322 SKSARKIIDVRQVT*IVNLFSNRRETVQPIFCPAESAAIAMAAVDLQAT*LEPVTRLLP- 146
           +++ ++I++      + + F  +R+ ++ I   A  AA+A  A        E V R  P 
Sbjct: 347 NQNVKQIVESITYDFLTSYFEKKRDVLKAIVEKAIEAALAREAAKKAK---ELVRRKSPL 403

Query: 145 EEGVLPGVKTICS 107
           EEGVLPG    CS
Sbjct: 404 EEGVLPGKLADCS 416



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>ALF_ORYSA (P17784) Fructose-bisphosphate aldolase cytoplasmic isozyme (EC|
           4.1.2.13) (Gravity-specific protein GSC 233)
          Length = 358

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
 Frame = -2

Query: 277 IVNLFSNRRETVQPIFCPAESAAIAMAAVDLQAT*LE------PVTRLLPEEGVLPGVK- 119
           + N+  NRR   + +FC   +       +  + T  +      P   +L E GVLPG+K 
Sbjct: 45  VENVEENRRSLRELLFCTPGALQYLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKV 104

Query: 118 ---TICSGGSE-SCACEGRDSSARR 56
              TI   G+E     +G D   +R
Sbjct: 105 DKGTIEVAGTEKETTTQGHDDLGKR 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,007,836
Number of Sequences: 219361
Number of extensions: 646432
Number of successful extensions: 2031
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2031
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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