Clone Name | bastl55h09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK100439.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089F03, full insert sequence Length = 3369 Score = 335 bits (169), Expect = 7e-89 Identities = 283/321 (88%) Strand = Plus / Plus Query: 105 ccgctgcagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgtgacg 164 |||| |||| || |||||| || ||||||||||||||||||||||||||||| | || | Sbjct: 227 ccgccgcaggtaattttgatgctgggcagtacgccttcttcgggaaggagccactggagg 286 Query: 165 ggctcgagctaggttgcttggaggtcgacggcggccatggcaatggcggcggattcagcg 224 | |||||||| |||||||||||| | |||||| ||||||||||||| |||||||||| Sbjct: 287 gactcgagctcagttgcttggaggatggcggcggtgatggcaatggcggtggattcagcg 346 Query: 225 gggcagaaaatgggctgtaccgtctctcttcggttggagaagagattgacaatctaagta 284 || ||||| ||||||||||||| |||||||| ||||||||||||||||| ||||| |||| Sbjct: 347 ggccagaagatgggctgtaccggctctcttctgttggagaagagattgataatctgagta 406 Query: 285 acttgtcggacgtcgatgatcttgcgagcacttttgctaagttgaaccgaaccgttagtg 344 ||||||| || | ||||||||||||||||||||||| ||||||||||||| | |||||| Sbjct: 407 acttgtcagaaattgatgatcttgcgagcacttttgcaaagttgaaccgaagcattagtg 466 Query: 345 gagcacggaatcctggtgttattggtgacagacgatccatttcaagaggaagttctttaa 404 || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| Sbjct: 467 gaacacggaatcctggtgttattggtgacagaagatccatctcaagaggaagttctctaa 526 Query: 405 ctggtgattggactgaggatg 425 ||| ||||||| |||| |||| Sbjct: 527 ctgttgattgggctgaagatg 547
>dbj|AK072195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151K20, full insert sequence Length = 3262 Score = 335 bits (169), Expect = 7e-89 Identities = 283/321 (88%) Strand = Plus / Plus Query: 105 ccgctgcagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgtgacg 164 |||| |||| || |||||| || ||||||||||||||||||||||||||||| | || | Sbjct: 228 ccgccgcaggtaattttgatgctgggcagtacgccttcttcgggaaggagccactggagg 287 Query: 165 ggctcgagctaggttgcttggaggtcgacggcggccatggcaatggcggcggattcagcg 224 | |||||||| |||||||||||| | |||||| ||||||||||||| |||||||||| Sbjct: 288 gactcgagctcagttgcttggaggatggcggcggtgatggcaatggcggtggattcagcg 347 Query: 225 gggcagaaaatgggctgtaccgtctctcttcggttggagaagagattgacaatctaagta 284 || ||||| ||||||||||||| |||||||| ||||||||||||||||| ||||| |||| Sbjct: 348 ggccagaagatgggctgtaccggctctcttctgttggagaagagattgataatctgagta 407 Query: 285 acttgtcggacgtcgatgatcttgcgagcacttttgctaagttgaaccgaaccgttagtg 344 ||||||| || | ||||||||||||||||||||||| ||||||||||||| | |||||| Sbjct: 408 acttgtcagaaattgatgatcttgcgagcacttttgcaaagttgaaccgaagcattagtg 467 Query: 345 gagcacggaatcctggtgttattggtgacagacgatccatttcaagaggaagttctttaa 404 || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| Sbjct: 468 gaacacggaatcctggtgttattggtgacagaagatccatctcaagaggaagttctctaa 527 Query: 405 ctggtgattggactgaggatg 425 ||| ||||||| |||| |||| Sbjct: 528 ctgttgattgggctgaagatg 548
>dbj|AK070157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046D01, full insert sequence Length = 3981 Score = 335 bits (169), Expect = 7e-89 Identities = 283/321 (88%) Strand = Plus / Plus Query: 105 ccgctgcagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgtgacg 164 |||| |||| || |||||| || ||||||||||||||||||||||||||||| | || | Sbjct: 226 ccgccgcaggtaattttgatgctgggcagtacgccttcttcgggaaggagccactggagg 285 Query: 165 ggctcgagctaggttgcttggaggtcgacggcggccatggcaatggcggcggattcagcg 224 | |||||||| |||||||||||| | |||||| ||||||||||||| |||||||||| Sbjct: 286 gactcgagctcagttgcttggaggatggcggcggtgatggcaatggcggtggattcagcg 345 Query: 225 gggcagaaaatgggctgtaccgtctctcttcggttggagaagagattgacaatctaagta 284 || ||||| ||||||||||||| |||||||| ||||||||||||||||| ||||| |||| Sbjct: 346 ggccagaagatgggctgtaccggctctcttctgttggagaagagattgataatctgagta 405 Query: 285 acttgtcggacgtcgatgatcttgcgagcacttttgctaagttgaaccgaaccgttagtg 344 ||||||| || | ||||||||||||||||||||||| ||||||||||||| | |||||| Sbjct: 406 acttgtcagaaattgatgatcttgcgagcacttttgcaaagttgaaccgaagcattagtg 465 Query: 345 gagcacggaatcctggtgttattggtgacagacgatccatttcaagaggaagttctttaa 404 || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| Sbjct: 466 gaacacggaatcctggtgttattggtgacagaagatccatctcaagaggaagttctctaa 525 Query: 405 ctggtgattggactgaggatg 425 ||| ||||||| |||| |||| Sbjct: 526 ctgttgattgggctgaagatg 546
>dbj|AK102498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095B10, full insert sequence Length = 3458 Score = 252 bits (127), Expect = 8e-64 Identities = 184/203 (90%) Strand = Plus / Plus Query: 227 gcagaaaatgggctgtaccgtctctcttcggttggagaagagattgacaatctaagtaac 286 |||||| | ||||||||||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct: 355 gcagaagaagggctgtaccggctctcctctgttggagaagagattgataatctgagtaac 414 Query: 287 ttgtcggacgtcgatgatcttgcgagcacttttgctaagttgaaccgaaccgttagtgga 346 ||||| || | ||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 415 ttgtccgatattgatgatcttgcgagcacttttgcaaagttgaaccgaaccattagtgga 474 Query: 347 gcacggaatcctggtgttattggtgacagacgatccatttcaagaggaagttctttaact 406 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 475 acacggaatcctggtgttattggtgacagacgatccatctcaagaggaagttctctaact 534 Query: 407 ggtgattggactgaggatgtaga 429 | ||||||| |||| |||||||| Sbjct: 535 gttgattgggctgaagatgtaga 557 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 105 ccgctgcagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgtgacg 164 ||||| |||||| ||| || |||| ||||||| ||||||||||||||||||| | || | Sbjct: 221 ccgctccagataatttcgatgccgcgcagtactccttcttcgggaaggagccactggagg 280 Query: 165 ggctcgagctaggttgcttggagg 188 |||||||||| |||||||||||| Sbjct: 281 ggctcgagctcagttgcttggagg 304
>dbj|AK067500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111P10, full insert sequence Length = 3286 Score = 252 bits (127), Expect = 8e-64 Identities = 184/203 (90%) Strand = Plus / Plus Query: 227 gcagaaaatgggctgtaccgtctctcttcggttggagaagagattgacaatctaagtaac 286 |||||| | ||||||||||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct: 363 gcagaagaagggctgtaccggctctcctctgttggagaagagattgataatctgagtaac 422 Query: 287 ttgtcggacgtcgatgatcttgcgagcacttttgctaagttgaaccgaaccgttagtgga 346 ||||| || | ||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 423 ttgtccgatattgatgatcttgcgagcacttttgcaaagttgaaccgaaccattagtgga 482 Query: 347 gcacggaatcctggtgttattggtgacagacgatccatttcaagaggaagttctttaact 406 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 483 acacggaatcctggtgttattggtgacagacgatccatctcaagaggaagttctctaact 542 Query: 407 ggtgattggactgaggatgtaga 429 | ||||||| |||| |||||||| Sbjct: 543 gttgattgggctgaagatgtaga 565 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 111 cagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgtgacgggctcg 170 |||||| ||| || |||| ||||||| ||||||||||||||||||| | || ||||||| Sbjct: 235 cagataatttcgatgccgcgcagtaccccttcttcgggaaggagccactggaggggctcg 294 Query: 171 agctaggttgcttggagg 188 |||| |||||||||||| Sbjct: 295 agctcagttgcttggagg 312
>ref|NM_191402.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2292 Score = 188 bits (95), Expect = 1e-44 Identities = 143/159 (89%) Strand = Plus / Plus Query: 267 agattgacaatctaagtaacttgtcggacgtcgatgatcttgcgagcacttttgctaagt 326 ||||||| ||||| ||||||||||| || | ||||||||||||||||||||||| |||| Sbjct: 8 agattgataatctgagtaacttgtcagaaattgatgatcttgcgagcacttttgcaaagt 67 Query: 327 tgaaccgaaccgttagtggagcacggaatcctggtgttattggtgacagacgatccattt 386 ||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||| | Sbjct: 68 tgaaccgaagcattagtggaacacggaatcctggtgttattggtgacagaagatccatct 127 Query: 387 caagaggaagttctttaactggtgattggactgaggatg 425 |||||||||||||| |||||| ||||||| |||| |||| Sbjct: 128 caagaggaagttctctaactgttgattgggctgaagatg 166
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 151 bits (76), Expect = 2e-33 Identities = 139/160 (86%) Strand = Plus / Plus Query: 109 tgcagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgtgacgggct 168 ||||| || |||||| || ||||||||||||||||||||||||||||| | || || || Sbjct: 32427008 tgcaggtaattttgatgctgggcagtacgccttcttcgggaaggagccactggagggact 32427067 Query: 169 cgagctaggttgcttggaggtcgacggcggccatggcaatggcggcggattcagcggggc 228 |||||| |||||||||||| | |||||| ||||||||||||| |||||||||||| | Sbjct: 32427068 cgagctcagttgcttggaggatggcggcggtgatggcaatggcggtggattcagcgggcc 32427127 Query: 229 agaaaatgggctgtaccgtctctcttcggttggagaagag 268 |||| ||||||||||||| |||||||| |||||||||||| Sbjct: 32427128 agaagatgggctgtaccggctctcttctgttggagaagag 32427167 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 324 agttgaaccgaaccgttagtggagcacggaatcctggtgttattggtgacagacgatcca 383 |||||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 32429347 agttgaaccgaagcattagtggaacacggaatcctggtgttattggtgacagaagatcca 32429406 Query: 384 tttcaagaggaagt 397 | |||||||||||| Sbjct: 32429407 tctcaagaggaagt 32429420 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 267 agattgacaatctaagtaacttgtcggacgtcgatgatcttgcgagcacttttgc 321 ||||||| ||||| ||||||||||| || | ||||||||||||||||||||||| Sbjct: 32428468 agattgataatctgagtaacttgtcagaaattgatgatcttgcgagcacttttgc 32428522
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 151 bits (76), Expect = 2e-33 Identities = 139/160 (86%) Strand = Plus / Plus Query: 109 tgcagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgtgacgggct 168 ||||| || |||||| || ||||||||||||||||||||||||||||| | || || || Sbjct: 14529 tgcaggtaattttgatgctgggcagtacgccttcttcgggaaggagccactggagggact 14588 Query: 169 cgagctaggttgcttggaggtcgacggcggccatggcaatggcggcggattcagcggggc 228 |||||| |||||||||||| | |||||| ||||||||||||| |||||||||||| | Sbjct: 14589 cgagctcagttgcttggaggatggcggcggtgatggcaatggcggtggattcagcgggcc 14648 Query: 229 agaaaatgggctgtaccgtctctcttcggttggagaagag 268 |||| ||||||||||||| |||||||| |||||||||||| Sbjct: 14649 agaagatgggctgtaccggctctcttctgttggagaagag 14688 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 324 agttgaaccgaaccgttagtggagcacggaatcctggtgttattggtgacagacgatcca 383 |||||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 16868 agttgaaccgaagcattagtggaacacggaatcctggtgttattggtgacagaagatcca 16927 Query: 384 tttcaagaggaagt 397 | |||||||||||| Sbjct: 16928 tctcaagaggaagt 16941 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 267 agattgacaatctaagtaacttgtcggacgtcgatgatcttgcgagcacttttgc 321 ||||||| ||||| ||||||||||| || | ||||||||||||||||||||||| Sbjct: 15989 agattgataatctgagtaacttgtcagaaattgatgatcttgcgagcacttttgc 16043
>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1143G03 Length = 137770 Score = 151 bits (76), Expect = 2e-33 Identities = 139/160 (86%) Strand = Plus / Plus Query: 109 tgcagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgtgacgggct 168 ||||| || |||||| || ||||||||||||||||||||||||||||| | || || || Sbjct: 106505 tgcaggtaattttgatgctgggcagtacgccttcttcgggaaggagccactggagggact 106564 Query: 169 cgagctaggttgcttggaggtcgacggcggccatggcaatggcggcggattcagcggggc 228 |||||| |||||||||||| | |||||| ||||||||||||| |||||||||||| | Sbjct: 106565 cgagctcagttgcttggaggatggcggcggtgatggcaatggcggtggattcagcgggcc 106624 Query: 229 agaaaatgggctgtaccgtctctcttcggttggagaagag 268 |||| ||||||||||||| |||||||| |||||||||||| Sbjct: 106625 agaagatgggctgtaccggctctcttctgttggagaagag 106664 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 324 agttgaaccgaaccgttagtggagcacggaatcctggtgttattggtgacagacgatcca 383 |||||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 108844 agttgaaccgaagcattagtggaacacggaatcctggtgttattggtgacagaagatcca 108903 Query: 384 tttcaagaggaagt 397 | |||||||||||| Sbjct: 108904 tctcaagaggaagt 108917 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 267 agattgacaatctaagtaacttgtcggacgtcgatgatcttgcgagcacttttgc 321 ||||||| ||||| ||||||||||| || | ||||||||||||||||||||||| Sbjct: 107965 agattgataatctgagtaacttgtcagaaattgatgatcttgcgagcacttttgc 108019
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 123 bits (62), Expect = 5e-25 Identities = 71/74 (95%) Strand = Plus / Plus Query: 324 agttgaaccgaaccgttagtggagcacggaatcctggtgttattggtgacagacgatcca 383 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 18808266 agttgaaccgaaccattagtggaacacggaatcctggtgttattggtgacagacgatcca 18808325 Query: 384 tttcaagaggaagt 397 | |||||||||||| Sbjct: 18808326 tctcaagaggaagt 18808339 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 109 tgcagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgtgacgggct 168 |||||||| ||| || |||| ||||||| ||||||||||||||||||| | || ||||| Sbjct: 18805957 tgcagataatttcgatgccgcgcagtactccttcttcgggaaggagccactggaggggct 18806016 Query: 169 cgagctaggttgcttggagg 188 |||||| |||||||||||| Sbjct: 18806017 cgagctcagttgcttggagg 18806036 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 267 agattgacaatctaagtaacttgtcggacgtcgatgatcttgcgagcacttttgc 321 ||||||| ||||| ||||||||||| || | ||||||||||||||||||||||| Sbjct: 18807457 agattgataatctgagtaacttgtccgatattgatgatcttgcgagcacttttgc 18807511 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 227 gcagaaaatgggctgtaccgtctctcttcggttggagaagag 268 |||||| | ||||||||||| ||||| || |||||||||||| Sbjct: 18806087 gcagaagaagggctgtaccggctctcctctgttggagaagag 18806128
>dbj|AP005497.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0071O21 Length = 158410 Score = 123 bits (62), Expect = 5e-25 Identities = 71/74 (95%) Strand = Plus / Plus Query: 324 agttgaaccgaaccgttagtggagcacggaatcctggtgttattggtgacagacgatcca 383 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 151018 agttgaaccgaaccattagtggaacacggaatcctggtgttattggtgacagacgatcca 151077 Query: 384 tttcaagaggaagt 397 | |||||||||||| Sbjct: 151078 tctcaagaggaagt 151091 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 109 tgcagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgtgacgggct 168 |||||||| ||| || |||| ||||||| ||||||||||||||||||| | || ||||| Sbjct: 148709 tgcagataatttcgatgccgcgcagtactccttcttcgggaaggagccactggaggggct 148768 Query: 169 cgagctaggttgcttggagg 188 |||||| |||||||||||| Sbjct: 148769 cgagctcagttgcttggagg 148788 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 267 agattgacaatctaagtaacttgtcggacgtcgatgatcttgcgagcacttttgc 321 ||||||| ||||| ||||||||||| || | ||||||||||||||||||||||| Sbjct: 150209 agattgataatctgagtaacttgtccgatattgatgatcttgcgagcacttttgc 150263 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 227 gcagaaaatgggctgtaccgtctctcttcggttggagaagag 268 |||||| | ||||||||||| ||||| || |||||||||||| Sbjct: 148839 gcagaagaagggctgtaccggctctcctctgttggagaagag 148880
>dbj|AP007253.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0004O05 Length = 140513 Score = 123 bits (62), Expect = 5e-25 Identities = 71/74 (95%) Strand = Plus / Plus Query: 324 agttgaaccgaaccgttagtggagcacggaatcctggtgttattggtgacagacgatcca 383 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 53741 agttgaaccgaaccattagtggaacacggaatcctggtgttattggtgacagacgatcca 53800 Query: 384 tttcaagaggaagt 397 | |||||||||||| Sbjct: 53801 tctcaagaggaagt 53814 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 109 tgcagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgtgacgggct 168 |||||||| ||| || |||| ||||||| ||||||||||||||||||| | || ||||| Sbjct: 51432 tgcagataatttcgatgccgcgcagtactccttcttcgggaaggagccactggaggggct 51491 Query: 169 cgagctaggttgcttggagg 188 |||||| |||||||||||| Sbjct: 51492 cgagctcagttgcttggagg 51511 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 267 agattgacaatctaagtaacttgtcggacgtcgatgatcttgcgagcacttttgc 321 ||||||| ||||| ||||||||||| || | ||||||||||||||||||||||| Sbjct: 52932 agattgataatctgagtaacttgtccgatattgatgatcttgcgagcacttttgc 52986 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 227 gcagaaaatgggctgtaccgtctctcttcggttggagaagag 268 |||||| | ||||||||||| ||||| || |||||||||||| Sbjct: 51562 gcagaagaagggctgtaccggctctcctctgttggagaagag 51603
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 194 ggcggccatggcaatggcggcgg 216 ||||||||||||||||||||||| Sbjct: 869233 ggcggccatggcaatggcggcgg 869255
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acggcggccatggcaatggcggcgga 217 |||||||||||||||| ||||||||| Sbjct: 2340547 acggcggccatggcaacggcggcgga 2340572 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 acggcggccatggcaatggcggcgg 216 |||||||||| |||||||||||||| Sbjct: 2340637 acggcggccacggcaatggcggcgg 2340661
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 192 acggcggccatggcaatggcggcgga 217 |||||||||||||||| ||||||||| Sbjct: 1155345 acggcggccatggcaacggcggcgga 1155320 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 acggcggccatggcaatggcggcgg 216 |||||||||| |||||||||||||| Sbjct: 1155255 acggcggccacggcaatggcggcgg 1155231
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 acggcggccatggcaatggcggcgg 216 |||||||||| |||||||||||||| Sbjct: 1037032 acggcggccacggcaatggcggcgg 1037008
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 186 aggtcgacggcggccatggcaatggcggc 214 |||||||||||| ||| |||||||||||| Sbjct: 4875933 aggtcgacggcgcccagggcaatggcggc 4875905
>gb|AC008731.8| Homo sapiens chromosome 16 clone CTD-2515A14, complete sequence Length = 219013 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 agatcctccgctgcagatagt 118 ||||||||||||||||||||| Sbjct: 118677 agatcctccgctgcagatagt 118697
>dbj|AK025277.1| Homo sapiens cDNA: FLJ21624 fis, clone COL08006 Length = 2350 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 agatcctccgctgcagatagt 118 ||||||||||||||||||||| Sbjct: 2331 agatcctccgctgcagatagt 2311
>gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, complete sequence Length = 218755 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gggagagaagcagcactgga 56 |||||||||||||||||||| Sbjct: 179946 gggagagaagcagcactgga 179965
>gb|CP000145.1| Rhodobacter sphaeroides 2.4.1 plasmid B, complete sequence Length = 114178 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 cggcggccatggcaatggcggcgg 216 |||||||||||||||| ||||||| Sbjct: 37561 cggcggccatggcaatcgcggcgg 37584
>gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D08, complete sequence Length = 94286 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tcgacggcggccatggcaatggcg 212 ||||||||||| |||||||||||| Sbjct: 44574 tcgacggcggcgatggcaatggcg 44551
>gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0016G07, complete sequence Length = 123167 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tcgacggcggccatggcaatggcg 212 ||||||||||| |||||||||||| Sbjct: 111475 tcgacggcggcgatggcaatggcg 111452
>gb|AC105325.11| Mus musculus chromosome 1, clone RP24-455G23, complete sequence Length = 139801 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gggagagaagcagcactgga 56 |||||||||||||||||||| Sbjct: 18133 gggagagaagcagcactgga 18152
>gb|AC092377.3| Homo sapiens chromosome 16 clone RP11-680G10, complete sequence Length = 207283 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tgggagagaagcagcactgg 55 |||||||||||||||||||| Sbjct: 124643 tgggagagaagcagcactgg 124624
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tcgacggcggccatggcaatggcg 212 ||||||||||| |||||||||||| Sbjct: 6740313 tcgacggcggcgatggcaatggcg 6740290
>gb|AF541963.1| Glycine max cv Williams 82 BAC clone Gm_ISb001_091_F11, complete sequence Length = 118773 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cggccatggcaatggcggcg 215 |||||||||||||||||||| Sbjct: 71753 cggccatggcaatggcggcg 71734
>ref|XM_315632.2| Anopheles gambiae str. PEST ENSANGP00000007272 (ENSANGG00000005486), partial mRNA Length = 1622 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gcgagcacttttgctaagtt 327 |||||||||||||||||||| Sbjct: 315 gcgagcacttttgctaagtt 296
>gb|AC139382.3| Mus musculus BAC clone RP23-30B24 from 12, complete sequence Length = 180698 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 tgattggactgaggatgtag 428 |||||||||||||||||||| Sbjct: 124734 tgattggactgaggatgtag 124715 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,837,620 Number of Sequences: 3902068 Number of extensions: 2837620 Number of successful extensions: 62002 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61675 Number of HSP's gapped (non-prelim): 327 length of query: 434 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 412 effective length of database: 17,147,199,772 effective search space: 7064646306064 effective search space used: 7064646306064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)