Clone Information

BLAST Search Result

Clone Name	bastl55h06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ARFH_ARATH (Q9FGV1) Auxin response factor 8	137	1e-32
2	ARFF_ARATH (Q9ZTX8) Auxin response factor 6	133	2e-31
3	ARFE_ARATH (P93024) Auxin response factor 5 (Transcription facto...	111	1e-24
4	ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive p...	110	2e-24
5	ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hyp...	107	2e-23
6	ARFK_ARATH (Q9ZPY6) Auxin response factor 11	76	4e-14
7	ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protei...	76	4e-14
8	ARFA_ARATH (Q8L7G0) Auxin response factor 1	73	3e-13
9	ARFR_ARATH (Q9C5W9) Auxin response factor 18	72	1e-12
10	ARFD_ARATH (Q9ZTX9) Auxin response factor 4	68	1e-11
11	ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)	66	5e-11
12	ARFI_ARATH (Q9XED8) Auxin response factor 9	62	8e-10
13	ARFW_ARATH (Q9LP07) Putative auxin response factor 23	60	2e-09
14	ARFJ_ARATH (Q9SKN5) Auxin response factor 10	57	2e-08
15	ARFM_ARATH (Q9FX25) Putative auxin response factor 13	57	3e-08
16	ARFP_ARATH (Q93YR9) Auxin response factor 16	56	4e-08
17	ARFN_ARATH (Q9LQE8) Putative auxin response factor 14	55	7e-08
18	ARFL_ARATH (Q9XID4) Putative auxin response factor 12	55	7e-08
19	ARFO_ARATH (Q9LQE3) Putative auxin response factor 15	55	1e-07
20	ARFV_ARATH (Q9C8N7) Putative auxin response factor 22	54	2e-07
21	ARFU_ARATH (Q9C8N9) Putative auxin response factor 21	54	2e-07
22	ARFT_ARATH (Q9C7I9) Putative auxin response factor 20	54	3e-07
23	ARFQ_ARATH (Q84WU6) Auxin response factor 17	42	6e-04
24	PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precu...	35	0.10
25	CHSS3_HUMAN (Q70JA7) Chondroitin sulfate synthase 3 (EC 2.4.1.17...	32	0.65
26	PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-pho...	31	1.4
27	MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosi...	30	2.5
28	AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Pro...	30	3.2
29	IF2_PROMM (Q7V5M4) Translation initiation factor IF-2	30	4.2
30	BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing...	29	5.5
31	IER2_HUMAN (Q9BTL4) Immediate early response gene 2 protein (Pro...	29	5.5
32	CAR14_HUMAN (Q9BXL6) Caspase recruitment domain-containing prote...	29	7.2
33	NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neur...	29	7.2
34	COBB_STRCO (Q9RJ16) Cobyrinic acid A,C-diamide synthase	29	7.2
35	TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.2...	29	7.2
36	GPI8_PONPY (Q5R6L8) GPI-anchor transamidase precursor (EC 3.-.-....	28	9.4
37	GPI8_PIG (Q4KRV1) GPI-anchor transamidase precursor (EC 3.-.-.-)...	28	9.4
38	GPI8_HUMAN (Q92643) GPI-anchor transamidase precursor (EC 3.-.-....	28	9.4
39	GPI8_BOVIN (Q3MHZ7) GPI-anchor transamidase precursor (EC 3.-.-....	28	9.4
40	MMPL2_MYCTU (Q11171) Putative membrane protein mmpL2	28	9.4
41	ATG3_BRARE (Q6PFS7) Autophagy-related protein 3 (APG3-like)	28	9.4
42	CAR14_MOUSE (Q99KF0) Caspase recruitment domain-containing prote...	28	9.4
43	PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-bi...	28	9.4
44	PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-bi...	28	9.4

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score =  137 bits (345), Expect = 1e-32
 Identities = 62/72 (86%), Positives = 69/72 (95%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           +K LNSELWHACAGPLV LP+ G+RVVYFPQGHSEQVAA+TNKEV+GHIPNYP+LPPQLI
Sbjct: 16  EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLI 75

Query: 439 CQLHDVTMHADV 474
           CQLH+VTMHADV
Sbjct: 76  CQLHNVTMHADV 87

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>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score =  133 bits (335), Expect = 2e-31
 Identities = 61/72 (84%), Positives = 67/72 (93%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           K+ LNSELWHACAGPLV LP +G+RVVYFPQGHSEQVAASTNKEV+ HIPNYP+L PQLI
Sbjct: 17  KRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLI 76

Query: 439 CQLHDVTMHADV 474
           CQLH+VTMHADV
Sbjct: 77  CQLHNVTMHADV 88

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>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)|
           (Auxin-responsive protein IAA24)
          Length = 902

 Score =  111 bits (277), Expect = 1e-24
 Identities = 48/71 (67%), Positives = 57/71 (80%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           K  +NSELWHACAGPLVCLP +G+ V YF QGHSEQVA ST +     +PNYPNLP QL+
Sbjct: 48  KPVINSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLM 107

Query: 439 CQLHDVTMHAD 471
           CQ+H+VT+HAD
Sbjct: 108 CQVHNVTLHAD 118

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>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score =  110 bits (274), Expect = 2e-24
 Identities = 51/71 (71%), Positives = 59/71 (83%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           KK +NS+LWHACAGPLV LP +G+ VVYFPQGHSEQVAAS  K+ +  IPNYPNLP +LI
Sbjct: 17  KKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTD-FIPNYPNLPSKLI 75

Query: 439 CQLHDVTMHAD 471
           C LH VT+HAD
Sbjct: 76  CLLHSVTLHAD 86

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>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score =  107 bits (267), Expect = 2e-23
 Identities = 48/71 (67%), Positives = 60/71 (84%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           ++N+NSELWHACAGPL+ LP  G+ VVYFPQGHSEQVAAS  K+ +  IP+YPNLP +LI
Sbjct: 18  RRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTD-FIPSYPNLPSKLI 76

Query: 439 CQLHDVTMHAD 471
           C LH+VT++AD
Sbjct: 77  CMLHNVTLNAD 87

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>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
 Frame = +1

Query: 268 LNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNK-EVEGHIPNYPNLPPQLICQ 444
           L +ELW ACAGPLV +P  G RV YFPQGH EQ+ ASTN+  V+  IP + NLPP+++C+
Sbjct: 18  LYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVF-NLPPKILCR 76

Query: 445 LHDVTMHAD 471
           +  VT+ A+
Sbjct: 77  VLSVTLKAE 85

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>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)|
          Length = 859

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 37/68 (54%), Positives = 48/68 (70%)
 Frame = +1

Query: 268 LNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLICQL 447
           L  ELWHACAGPLV +P    RV YFPQGH EQV ASTN+  E  +P Y +LP +L+C++
Sbjct: 58  LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY-DLPSKLLCRV 116

Query: 448 HDVTMHAD 471
            +V + A+
Sbjct: 117 INVDLKAE 124

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>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 32/65 (49%), Positives = 48/65 (73%)
 Frame = +1

Query: 277 ELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLICQLHDV 456
           ELWHACAGPLV LP  G RV YFP+GH EQ+ AS ++ +E  +P++ NLP +++C++ ++
Sbjct: 22  ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSF-NLPSKILCKVINI 80

Query: 457 TMHAD 471
              A+
Sbjct: 81  QRRAE 85

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>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 33/68 (48%), Positives = 46/68 (67%)
 Frame = +1

Query: 268 LNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLICQL 447
           L +ELW  CAGPLV +P    RV YFPQGH EQ+ ASTN+ +        +LPP+++C++
Sbjct: 22  LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRV 81

Query: 448 HDVTMHAD 471
            DVT+ A+
Sbjct: 82  LDVTLKAE 89

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>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = +1

Query: 265 NLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVA-ASTNKEVEGHIPNYPNLPPQLIC 441
           ++ SELWHACAGPL CLP  G  VVYFPQGH EQ A  S +  +E  IP + +L PQ++C
Sbjct: 61  SIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLE--IPKF-DLNPQIVC 117

Query: 442 QLHDVTMHAD 471
           ++ +V + A+
Sbjct: 118 RVVNVQLLAN 127

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>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)|
          Length = 608

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 32/65 (49%), Positives = 42/65 (64%)
 Frame = +1

Query: 277 ELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLICQLHDV 456
           ELWHACAGPL+ LP  G+ V+YFPQGH EQ A   +  + G       LPP + C++ DV
Sbjct: 54  ELWHACAGPLISLPKRGSLVLYFPQGHLEQ-APDFSAAIYG-------LPPHVFCRILDV 105

Query: 457 TMHAD 471
            +HA+
Sbjct: 106 KLHAE 110

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>ARFI_ARATH (Q9XED8) Auxin response factor 9|
          Length = 638

 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 30/68 (44%), Positives = 42/68 (61%)
 Frame = +1

Query: 268 LNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLICQL 447
           L  ELW  CAGPLV +P    RV YFPQGH EQ+ AST +     +     LPP+++C +
Sbjct: 9   LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKILCNV 68

Query: 448 HDVTMHAD 471
            +V++ A+
Sbjct: 69  MNVSLQAE 76

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>ARFW_ARATH (Q9LP07) Putative auxin response factor 23|
          Length = 222

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 32/72 (44%), Positives = 44/72 (61%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           K  +  +LW  CAGPL  +P LG +V YFPQGH E V AST +E+    PN  +LP +L 
Sbjct: 21  KSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNC-DLPSKLQ 79

Query: 439 CQLHDVTMHADV 474
           C++  + +H  V
Sbjct: 80  CRV--IAIHLKV 89

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>ARFJ_ARATH (Q9SKN5) Auxin response factor 10|
          Length = 693

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 27/71 (38%), Positives = 42/71 (59%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           +K+L+ +LWHACAG +V +P+L + V YF QGH+E   A  +          P +PP ++
Sbjct: 4   EKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHA-------PRVPPLIL 56

Query: 439 CQLHDVTMHAD 471
           C++  V   AD
Sbjct: 57  CRVVSVKFLAD 67

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>ARFM_ARATH (Q9FX25) Putative auxin response factor 13|
          Length = 623

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/71 (40%), Positives = 41/71 (57%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           K  +  +LW+ CAGPL  LP  G +V YFPQGH E +  ST  E++ HI    +LP +L 
Sbjct: 21  KTYMYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELD-HIRPIFDLPSKLR 79

Query: 439 CQLHDVTMHAD 471
           C++  +    D
Sbjct: 80  CRVVAIDRKVD 90

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>ARFP_ARATH (Q93YR9) Auxin response factor 16|
          Length = 670

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 26/71 (36%), Positives = 44/71 (61%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           +K L+ +LWHACAG +V +P + ++V YFPQGH+E      +    G++P    +PP ++
Sbjct: 13  EKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVD---FGNLP----IPPMVL 65

Query: 439 CQLHDVTMHAD 471
           C++  +   AD
Sbjct: 66  CRVLAIKYMAD 76

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>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14|
          Length = 605

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 27/63 (42%), Positives = 38/63 (60%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           K  +  +LW  CAGPL  +P LG +V YFPQGH E V AST +E+   +    + P +L 
Sbjct: 21  KSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREEL-NELQPICDFPSKLQ 79

Query: 439 CQL 447
           C++
Sbjct: 80  CRV 82

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>ARFL_ARATH (Q9XID4) Putative auxin response factor 12|
          Length = 593

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 29/72 (40%), Positives = 42/72 (58%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           K  +  +LW  CAGPL  +P LG +V YFPQGH E V  ST +E+   +    +LP +L 
Sbjct: 21  KSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREEL-NELQPICDLPSKLQ 79

Query: 439 CQLHDVTMHADV 474
           C++  + +H  V
Sbjct: 80  CRV--IAIHLKV 89

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>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15|
          Length = 593

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 29/72 (40%), Positives = 43/72 (59%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           K  +  +LW  CAGPL  +P LG +V YFPQG+ E V AST +E+   +    +LP +L 
Sbjct: 21  KSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREEL-NELQPICDLPSKLQ 79

Query: 439 CQLHDVTMHADV 474
           C++  + +H  V
Sbjct: 80  CRV--IAIHLKV 89

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>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22|
          Length = 598

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 26/63 (41%), Positives = 39/63 (61%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           K  +  +LW  CAGPL  +P LG ++ YFPQG+ E V AST +E+   +    +LP +L 
Sbjct: 21  KSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREEL-NELKPICDLPSKLQ 79

Query: 439 CQL 447
           C++
Sbjct: 80  CRV 82

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>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21|
          Length = 606

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 29/72 (40%), Positives = 42/72 (58%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           K  +  +LW  CAGPL  +P LG  V YFPQG+ E V AST +E+   +    +LP +L 
Sbjct: 21  KSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREEL-NELQPICDLPSKLQ 79

Query: 439 CQLHDVTMHADV 474
           C++  + +H  V
Sbjct: 80  CRV--IAIHLKV 89

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>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20|
          Length = 606

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 29/72 (40%), Positives = 42/72 (58%)
 Frame = +1

Query: 259 KKNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPPQLI 438
           K  +  +LW  CAGPL  +P LG  V YFPQG+ E V AST +E+   +    +LP +L 
Sbjct: 21  KSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREEL-NELQPICDLPSKLQ 79

Query: 439 CQLHDVTMHADV 474
           C++  + +H  V
Sbjct: 80  CRV--IAIHLKV 89

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>ARFQ_ARATH (Q84WU6) Auxin response factor 17|
          Length = 585

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +1

Query: 262 KNLNSELWHACAGPLVCLPTLGTRVVYFPQGHSE 363
           + ++  +W ACAG  V +P L +RV YFPQGH E
Sbjct: 14  REVDPTIWRACAGASVQIPVLHSRVYYFPQGHVE 47

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>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)|
          Length = 426

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -1

Query: 215 PPRLAPEEELISPAPVTRPENEKPTPPHKSARRYPILKSAAFSSHPAVIRARRSP 51
           PP   P  +  SP+P T+P  ++P PP + A++ P+L      ++P V+    SP
Sbjct: 197 PPPPPPPVKAPSPSPATQPPTKQPPPPPR-AKKSPLLPPPPPVAYPPVMTPSPSP 250

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>CHSS3_HUMAN (Q70JA7) Chondroitin sulfate synthase 3 (EC 2.4.1.175)|
           (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan
           4-beta-N-acetylgalactosaminyltransferase II)
           (Chondroitin synthase 2)
           (N-acetylgalactosaminyl-proteoglycan
           3-beta-glucuronosyltransferase
          Length = 882

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 212 PRLAPEEELISPAPVTRPENEKPTPPHKSARRYPILKSAAFSSHPAVIRARRSPW 48
           PR   ++ L  P P +RP  E+  PP +   + P L  AA    P +   R SPW
Sbjct: 55  PRAGAQQPL--PQPQSRPRQEQSPPPARQDLQGPPLPEAA----PGITSFRSSPW 103

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>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1003

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
 Frame = -1

Query: 215 PPRLAPEEELISPAPVTRP-----ENEKPTPPHKSARRY----PILKSAAFSSHP 78
           PP   P   L SP PV  P     E ++P PPH S R       ++ SAA +S P
Sbjct: 70  PPSERPRLVLSSPRPVLAPLSIAGEQKRPPPPHSSNRAAKSVGQLVVSAAAASKP 124



 Score = 28.9 bits (63), Expect = 7.2
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -1

Query: 212 PRLAPEEELISPAPVTRPENEKPTPPHKSARRYPILKSAAF-----SSHPAVIRARRSPW 48
           PR +PE+ ++ P P T P +  P  P +S  R P L S  F     SS       R+ P 
Sbjct: 289 PRHSPEDPVLPPPPQTLPLDVSPGLP-ESGTRSPGLLSPTFRPGIPSSQTVPPPLRKPPR 347

Query: 47  WPAR 36
            P+R
Sbjct: 348 SPSR 351

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>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3511

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -1

Query: 212  PRLAPEEELIS---PAPVTRPENEKPTPPHKS-ARRYPILKSAAFSSHPAVIRARRSPWW 45
            P L   EE+++   P P   PE   PTPP+K+      +L+ +A  S+P V   +    W
Sbjct: 999  PSLEKPEEVVTLGDPQPPAEPEALNPTPPNKNVVSERKVLRLSA--SYPLVTCKQARATW 1056

Query: 44   P 42
            P
Sbjct: 1057 P 1057

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>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene|
           AF4) (FEL protein)
          Length = 1210

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -1

Query: 215 PPRLAPEEELISPAPVTRPENEKPTPPHKSARRYPILKSAAFSSHPAVIRARRSP 51
           PPR  PE +  S +  ++  +E   PP KS+ + P  ++   + HP     ++SP
Sbjct: 537 PPRRHPESKGSSDSATSQEHSESKDPPPKSSSKAP--RAPPEAPHPGKRSCQKSP 589

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>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2|
          Length = 1125

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -1

Query: 212 PRLAPEEELISPAPVTRPENEKPTP---PHKSARR 117
           P     E +  PAP TRP N  PTP   P K+A R
Sbjct: 116 PARPSTESVAHPAPPTRPANPTPTPTSSPPKTAAR 150

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>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2304

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 313  LPTLGTRVVYFPQGHSEQVAA 375
            +P +G  V+YFPQGH   + A
Sbjct: 959  VPQMGDEVIYFPQGHEAYIEA 979

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>IER2_HUMAN (Q9BTL4) Immediate early response gene 2 protein (Protein ETR101)|
          Length = 223

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -1

Query: 212 PRLAPEEELISPAPVTRPENEKPTPPHKSARRYPILK--SAAFSSHPA-VIRARRS 54
           PRL P  E  S A    P+ E P P     +  P  +  SA  +  PA V R RRS
Sbjct: 69  PRLHPPREAESTAETATPDGEHPFPEPMDTQEAPTAEETSACCAPRPAKVSRKRRS 124

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>CAR14_HUMAN (Q9BXL6) Caspase recruitment domain-containing protein 14|
           (CARD-containing MAGUK protein 2) (Carma 2)
          Length = 1004

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 355 HSEQVAASTNKEVEGH--IPNYPNLPPQLICQLHDVTMHADV 474
           H+ +V + T K+   H  IPNY     QLI  + D+T    V
Sbjct: 717 HAHRVNSYTMKDTAAHGTIPNYSRAQQQLIALIQDMTQQCTV 758

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>NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 925

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 206 LAPEEELISPAPVTRPENEKPTPPHKSARRYPILKSAAFSSHPAVIRARRSP 51
           +AP+EEL + A V +PE  K         + P  KS    S  A     +SP
Sbjct: 599 VAPKEELAAEAKVEKPEKAKSPVAKSPTTKSPTAKSPEAKSPEAKSPTAKSP 650

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>COBB_STRCO (Q9RJ16) Cobyrinic acid A,C-diamide synthase|
          Length = 486

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -1

Query: 215 PPRLAPEEELISPAPVTRPENEKPTPPHKSARRYPILKSAAFS 87
           PP   P      P P+ RP   +P  P    RR  +   AAF+
Sbjct: 257 PPLPVPSPGAAPPDPLVRPGRPRPQAPDGLRRRVAMASGAAFT 299

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>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 543

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = -1

Query: 215 PPRLAPEEELISPAPVTRPENEKP--TPPHKSARRYPILKSAAFSSHPAVIRARRSP 51
           P R  P+      +P   P    P  TPP  S  R P   S A +  P    AR SP
Sbjct: 11  PARTPPQASPARTSPARAPPQASPARTPPQASPARTPPQASPARAPPPQASPARASP 67

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>GPI8_PONPY (Q5R6L8) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI|
           transamidase) (Phosphatidylinositol-glycan biosynthesis,
           class K protein) (PIG-K)
          Length = 395

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 105 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 197
           +D  PPGGF+ G W    +VF+  YG    + +F
Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395

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>GPI8_PIG (Q4KRV1) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI|
           transamidase) (Phosphatidylinositol-glycan biosynthesis,
           class K protein) (PIG-K)
          Length = 395

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 105 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 197
           +D  PPGGF+ G W    +VF+  YG    + +F
Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395

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>GPI8_HUMAN (Q92643) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI|
           transamidase) (Phosphatidylinositol-glycan biosynthesis,
           class K protein) (PIG-K) (hGPI8)
          Length = 395

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 105 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 197
           +D  PPGGF+ G W    +VF+  YG    + +F
Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395

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>GPI8_BOVIN (Q3MHZ7) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI|
           transamidase) (Phosphatidylinositol-glycan biosynthesis,
           class K protein) (PIG-K)
          Length = 395

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 105 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 197
           +D  PPGGF+ G W    +VF+  YG    + +F
Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395

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>MMPL2_MYCTU (Q11171) Putative membrane protein mmpL2|
          Length = 968

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 141  APSQIRPAVPHPQIRRILISSGSHPSS 61
            A   +RP  P   +R +L+ SG HPS+
Sbjct: 937  ASQMLRPFAPRRLVRALLLPSGQHPSA 963

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>ATG3_BRARE (Q6PFS7) Autophagy-related protein 3 (APG3-like)|
          Length = 317

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 403 IPNYPNLPPQLICQLHDVTMHADV 474
           I N+PNLPP  +C +H    HA+V
Sbjct: 250 IENHPNLPPPAMCSVHP-CRHAEV 272

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>CAR14_MOUSE (Q99KF0) Caspase recruitment domain-containing protein 14|
           (Bcl10-interacting MAGUK protein 2) (Bimp2)
          Length = 999

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 355 HSEQVAASTNKEVE-GHIPNYPNLPPQLICQLHDVTMHADV 474
           H+  V   T K++E G IPNY     QL+  + D+T    V
Sbjct: 714 HAHHVNPYTMKDMEPGTIPNYSQAQQQLLALIQDMTQRCTV 754

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>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 206 LAPEEELISPAPVTRPENEKPTP 138
           L PEE L+ P P   PE E P P
Sbjct: 54  LEPEELLLEPEPEPEPEEEPPRP 76

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>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 206 LAPEEELISPAPVTRPENEKPTP 138
           L PEE L+ P P   PE E P P
Sbjct: 54  LEPEELLLEPEPEPEPEEEPPRP 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,624,296
Number of Sequences: 219361
Number of extensions: 785868
Number of successful extensions: 3616
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 3263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3587
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result