Clone Name | bastl55h05 |
---|---|
Clone Library Name | barley_pub |
>gb|AC146029.4| Pan troglodytes BAC clone RP43-124D5 from 7, complete sequence Length = 190776 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 343 tccttgcctttccttccctgccctgcc 369 ||||| ||||||||||||||||||||| Sbjct: 70807 tccttccctttccttccctgccctgcc 70833
>gb|AC162380.4| Pan troglodytes BAC clone CH251-629G18 from chromosome 7, complete sequence Length = 210978 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 343 tccttgcctttccttccctgccctgcc 369 ||||| ||||||||||||||||||||| Sbjct: 200494 tccttccctttccttccctgccctgcc 200468
>gb|AC147087.3| Pan troglodytes BAC clone RP43-59E13 from 7, complete sequence Length = 130280 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 343 tccttgcctttccttccctgccctgcc 369 ||||| ||||||||||||||||||||| Sbjct: 83537 tccttccctttccttccctgccctgcc 83563
>gb|AC125474.16| Medicago truncatula clone mth2-16l11, complete sequence Length = 127369 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 335 ttctcccttccttgcctttccttccct 361 ||||||||||||| ||||||||||||| Sbjct: 10967 ttctcccttccttccctttccttccct 10993
>gb|AC121246.28| Medicago truncatula clone mth2-35m8, complete sequence Length = 124137 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 335 ttctcccttccttgcctttccttccct 361 ||||||||||||| ||||||||||||| Sbjct: 67586 ttctcccttccttccctttccttccct 67612
>gb|AC146704.8| Medicago truncatula clone mth2-107f11, complete sequence Length = 116591 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 335 ttctcccttccttgcctttccttccct 361 ||||||||||||| ||||||||||||| Sbjct: 72119 ttctcccttccttccctttccttccct 72145
>gb|AC183776.2| Pan troglodytes BAC clone CH251-246H3 from chromosome 7, complete sequence Length = 160056 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 343 tccttgcctttccttccctgccctgcc 369 ||||| ||||||||||||||||||||| Sbjct: 94608 tccttccctttccttccctgccctgcc 94634
>gb|AC119409.25| Medicago truncatula clone mth2-10i9, complete sequence Length = 127954 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 335 ttctcccttccttgcctttccttccct 361 ||||||||||||| ||||||||||||| Sbjct: 5948 ttctcccttccttccctttccttccct 5922
>gb|AC140282.3| Mus musculus BAC clone RP24-501L1 from 1, complete sequence Length = 206690 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 338 tcccttccttgcctttccttccctgccctgccttt 372 |||||||||| ||||||||||||| |||| ||||| Sbjct: 48493 tcccttcctttcctttccttcccttcccttccttt 48459
>gb|AC002064.1|HSAC002064 Human BAC clone RG016J04 from 7q21, complete sequence Length = 156214 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 343 tccttgcctttccttccctgccctgcc 369 ||||| ||||||||||||||||||||| Sbjct: 118989 tccttccctttccttccctgccctgcc 118963
>gb|AC012572.17| Homo sapiens chromosome 18, clone RP11-123I22, complete sequence Length = 172637 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 339 cccttccttgcctttccttccc 360 |||||||||||||||||||||| Sbjct: 15081 cccttccttgcctttccttccc 15102
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 113 cccaccgtcggcgtgggcgcacgtgccaccgcc 145 ||||||| ||||||| || |||||||||||||| Sbjct: 29740 cccaccgccggcgtgcgcacacgtgccaccgcc 29708
>gb|AC149030.1| Dasypus novemcinctus clone VMRC5-81F18, complete sequence Length = 154373 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 gcgcggcgcggcgccccctcc 53 ||||||||||||||||||||| Sbjct: 13913 gcgcggcgcggcgccccctcc 13933
>gb|AC113021.10| Mus musculus chromosome 6, clone RP23-186F2, complete sequence Length = 198397 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 333 tcttctcccttccttgcctttccttccct 361 |||| |||||||||| ||||||||||||| Sbjct: 60409 tcttttcccttccttccctttccttccct 60437
>gb|AC108951.4| Mus musculus BAC clone RP24-136D23 from 3, complete sequence Length = 148219 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 344 ccttgcctttccttccctgccctgccttttttctttc 380 |||| |||| |||||||| |||| ||||||||||||| Sbjct: 30083 ccttcccttcccttcccttcccttccttttttctttc 30119
>gb|AC113506.12| Mus musculus chromosome 9, clone RP23-373O2, complete sequence Length = 171170 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 338 tcccttccttgcctttccttccctgccct 366 |||||||||| ||||||||||||| |||| Sbjct: 123787 tcccttccttccctttccttccctcccct 123815
>gb|AC103769.2| Homo sapiens chromosome 8, clone RP11-110G21, complete sequence Length = 138097 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 339 cccttccttgcctttccttccctgc 363 ||||||||| ||||||||||||||| Sbjct: 134486 cccttccttccctttccttccctgc 134510
>gb|AC079089.8| Homo sapiens chromosome 8, clone RP11-159H10, complete sequence Length = 148531 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 344 ccttgcctttccttccctgccctgccttttttctttc 380 |||| ||||||||||||| |||| |||| |||||||| Sbjct: 59089 ccttccctttccttcccttcccttccttctttctttc 59125
>gb|AC093669.4| Homo sapiens BAC clone RP11-540E16 from 4, complete sequence Length = 96120 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 337 ctcccttccttgcctttccttccct 361 ||||||||||| ||||||||||||| Sbjct: 31209 ctcccttccttccctttccttccct 31185
>gb|AC064807.7| Homo sapiens chromosome 8, clone RP11-546K22, complete sequence Length = 203270 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 cccttccttgcctttccttccctgc 363 ||||||||| ||||||||||||||| Sbjct: 146107 cccttccttccctttccttccctgc 146083
>gb|AC067932.9| Homo sapiens chromosome 8, clone RP11-78F5, complete sequence Length = 163777 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 339 cccttccttgcctttccttccctgc 363 ||||||||| ||||||||||||||| Sbjct: 57023 cccttccttccctttccttccctgc 57047
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 25 ccaccaccgcgcggcgcggcgccccctcc 53 ||||| ||||| ||||||||||||||||| Sbjct: 940137 ccacccccgcgaggcgcggcgccccctcc 940109
>gb|AC153659.4| Mus musculus BAC clone RP23-283A3 from chromosome 3, complete sequence Length = 220855 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 344 ccttgcctttccttccctgccctgccttttttctttc 380 |||| |||| |||||||| |||| ||||||||||||| Sbjct: 123342 ccttcccttcccttcccttcccttccttttttctttc 123378
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 113 cccaccgtcggcgtgggcgcacgtgccaccgcc 145 ||||||| ||||||| || |||||||||||||| Sbjct: 23961251 cccaccgccggcgtgcgcacacgtgccaccgcc 23961219
>gb|AC007606.8| Homo sapiens chromosome 16 clone RP11-35P16, complete sequence Length = 157477 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 338 tcccttccttgcctttccttccctg 362 |||||||||||||||||||| |||| Sbjct: 97566 tcccttccttgcctttcctttcctg 97590
>gb|AC023830.9| Homo sapiens chromosome 16 clone RP11-709D24, complete sequence Length = 182662 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 338 tcccttccttgcctttccttccctg 362 |||||||||||||||||||| |||| Sbjct: 18679 tcccttccttgcctttcctttcctg 18703
>gb|AC123544.4| Lemur catta clone LB2-246N5, complete sequence Length = 195323 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 25 ccaccaccgcgcggcgcggcgccccctcc 53 ||||| ||||| ||||||||||||||||| Sbjct: 124876 ccacccccgcgaggcgcggcgccccctcc 124848
>dbj|AK069746.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030O13, full insert sequence Length = 2478 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 113 cccaccgtcggcgtgggcgcacgtgccaccgcc 145 ||||||| ||||||| || |||||||||||||| Sbjct: 112 cccaccgccggcgtgcgcacacgtgccaccgcc 144
>dbj|AP002962.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-652L8, complete sequence Length = 160222 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 335 ttctcccttccttgcctttccttccctgccctgcctt 371 |||| |||||||| ||||||||||||| |||| |||| Sbjct: 129351 ttcttccttcctttcctttccttcccttcccttcctt 129315
>dbj|AP000665.5| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-46G18, complete sequences Length = 103829 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 335 ttctcccttccttgcctttccttccctgccctgcctt 371 |||| |||||||| ||||||||||||| |||| |||| Sbjct: 25002 ttcttccttcctttcctttccttcccttcccttcctt 24966
>emb|AL772173.16| Mouse DNA sequence from clone RP23-163P22 on chromosome 2, complete sequence Length = 203185 Score = 42.1 bits (21), Expect = 1.6 Identities = 37/41 (90%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 333 tcttctcccttccttgcc-tttccttccctgccctgccttt 372 ||||||||||||||| || ||||||||||| |||| ||||| Sbjct: 96827 tcttctcccttccttcccttttccttcccttccctcccttt 96867
>emb|AL731735.14| Mouse DNA sequence from clone RP23-139P21 on chromosome X, complete sequence Length = 201223 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 ctcccttccttgcctttcctt 357 ||||||||||||||||||||| Sbjct: 159031 ctcccttccttgcctttcctt 159011
>ref|XM_525370.1| PREDICTED: Pan troglodytes LOC469986 (LOC469986), mRNA Length = 4965 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gaggccccgccaccttcccc 238 |||||||||||||||||||| Sbjct: 2426 gaggccccgccaccttcccc 2407
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 cggccaccaccgcgcggcgcggcg 45 ||||||| |||||||||||||||| Sbjct: 2898512 cggccacgaccgcgcggcgcggcg 2898535
>gb|BC016737.1| Homo sapiens mercaptopyruvate sulfurtransferase, mRNA (cDNA clone MGC:24539 IMAGE:4105509), complete cds Length = 1341 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 54 cgcggcgcggcgccccctcc 35
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ccgcgcggcgcggcgccccc 50 |||||||||||||||||||| Sbjct: 4963 ccgcgcggcgcggcgccccc 4944
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 cggccaccaccgcgcggcgcggcg 45 ||||||| |||||||||||||||| Sbjct: 3940338 cggccacgaccgcgcggcgcggcg 3940361
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 acggccaccaccgcgcggcg 40 |||||||||||||||||||| Sbjct: 4003116 acggccaccaccgcgcggcg 4003135
>gb|AE014314.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 11 of 11 of the complete sequence Length = 249198 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 tcccttccttgcctttccttccct 361 |||||||||| ||||||||||||| Sbjct: 44466 tcccttcctttcctttccttccct 44443
>gb|AC114916.5| Mus musculus BAC clone RP23-68E10 from 15, complete sequence Length = 207411 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 tcccttccttgcctttccttccct 361 |||||||||| ||||||||||||| Sbjct: 113711 tcccttcctttcctttccttccct 113688
>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence Length = 228750 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 335 ttctcccttccttgcctttccttccctgccct 366 |||||| |||||| ||||||||||||| |||| Sbjct: 142548 ttctcctttcctttcctttccttccctcccct 142517
>emb|Z73420.1|HSE146D10 Human DNA sequence from clone LL22NC01-146D10 on chromosome 22, complete sequence Length = 46463 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 18870 cgcggcgcggcgccccctcc 18851
>emb|AL683870.15| Human DNA sequence from clone RP11-261P4 on chromosome X Contains the 3' end of the IL3RA gene for interleukin 3 receptor, alpha (low affinity) (IL3R, CD123, IL3RX, IL3RY, IL3RAY, hIL-3Ra, MGC34174), the SLC25A6 gene for solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 (ANT3, ANT3Y, MGC17525), the ASMTL gene for acetylserotonin O-methyltransferase-like (ASMTLX), a novel gene (LOC286530), a novel gene (FLJ13330) and six CpG islands, complete sequence Length = 162377 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 tcccttccttgcctttccttccct 361 |||||||||| ||||||||||||| Sbjct: 135739 tcccttcctttcctttccttccct 135762
>emb|AL591428.2| Human DNA sequence from clone RP11-160A10 on chromosome 6 Contains the gene for a novel protein similar to hypothetical proteins from various model organisms, two novel genes and a putative novel gene. Contains a CpG island, complete sequence Length = 142012 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 tcccttccttgcctttccttccct 361 |||||||||||||||| ||||||| Sbjct: 137114 tcccttccttgccttttcttccct 137137
>emb|AL391376.8| Human DNA sequence from clone RP11-495B4 on chromosome 6, complete sequence Length = 114604 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 ttccctgccctgcctttttt 375 |||||||||||||||||||| Sbjct: 107460 ttccctgccctgcctttttt 107479
>emb|AL159982.17| Human DNA sequence from clone RP11-94P17 on chromosome 13 Contains the 3' end of a novel gene (FLJ25324) and a novel gene, complete sequence Length = 162414 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 tcccttccttgcctttccttccct 361 |||||||||| ||||||||||||| Sbjct: 94622 tcccttcctttcctttccttccct 94599
>emb|AL137850.12| Human DNA sequence from clone RP11-56P10 on chromosome 9q31.3-33.3 Contains the 3' end of the gene for a novel C2H2 type zinc finger protein, the AMBP gene for alpha-1-microglobulin/bikunin precursor, the gene for a novel protein similar to mouse kinesin 12 (LOC113220) and two CpG islands, complete sequence Length = 125842 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 ttccttccctgccctgcctt 371 |||||||||||||||||||| Sbjct: 31440 ttccttccctgccctgcctt 31421
>emb|AL132655.13|HSJ806M20 Human DNA sequence from clone RP4-806M20 on chromosome 20 Contains a novel pseudogene, the 5' end of the GNAS complex locus and a CpG island, complete sequence Length = 126586 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gaggccccgccaccttcccc 238 |||||||||||||||||||| Sbjct: 122656 gaggccccgccaccttcccc 122637
>emb|AL121901.20|HSBA49G10 Human DNA sequence from clone RP11-49G10 on chromosome 20 Contains the C20orf70 gene, the SOCS2P1 gene for suppressor of cytokine signalling 2 pseudogene 1, a novel gene, the C20orf71 gene, the PLUNC gene for palate, lung and nasal epithelium carcinoma associated, the 5' end of the C20orf114 gene encoding a protein similar to murine von ebner minor salivary gland protein, the RPL12P3 gene for ribosomal protein L12 pseudogene 3, the gene for breast cancer and salivary gland expression protein (BASE) and a CpG island, complete sequence Length = 161593 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 tgcctttccttccctgccctgcct 370 |||||||||||||||||| ||||| Sbjct: 154679 tgcctttccttccctgccttgcct 154656
>emb|AL031276.1|HS1118D24 Human DNA sequence from clone RP5-1118D24 on chromosome 1p36.11-36.33 Contains the 3' end of the TNFRSF1B gene for tumor necrosis factor receptor superfamily member 1B, a ribosomal protein L10 (RPL10) pseudogene, the 5' end of the VPS13D gene for vacuolar protein sorting 13D (yeast) and a CpG island, complete sequence Length = 115602 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 tcccttccttgcctttccttccct 361 |||||||||| ||||||||||||| Sbjct: 25571 tcccttcctttcctttccttccct 25548
>emb|AL022146.1|HS780M13 Human DNA sequence from clone RP4-780M13 on chromosome 1q24-25 Contains the 5' end of the SELP gene for selectin P (granule membrane protein 140kDa, antigen CD62) and the 5' end of a variant of a novel gene (FLJ45155), complete sequence Length = 78025 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 ttccttgcctttccttccct 361 |||||||||||||||||||| Sbjct: 29770 ttccttgcctttccttccct 29789
>gb|AC055753.21| Homo sapiens 3 BAC RP11-503I22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167662 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 ccttccctgccctgcctttt 373 |||||||||||||||||||| Sbjct: 112177 ccttccctgccctgcctttt 112196
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ccaccgcgcggcgcggcgcc 47 |||||||||||||||||||| Sbjct: 143024 ccaccgcgcggcgcggcgcc 143043
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ccaccgcgcggcgcggcgcc 47 |||||||||||||||||||| Sbjct: 55690 ccaccgcgcggcgcggcgcc 55709
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ccgcgcggcgcggcgccccc 50 |||||||||||||||||||| Sbjct: 1364193 ccgcgcggcgcggcgccccc 1364174
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 cggccaccaccgcgcggcgcggcg 45 ||||||| |||||||||||||||| Sbjct: 3682215 cggccacgaccgcgcggcgcggcg 3682238
>emb|AL929553.6| Mouse DNA sequence from clone RP24-316B1 on chromosome 4 Contains the 5' end of a variant of the Ptprd gene for receptor type protein tyrosine phosphatase D and a CpG island, complete sequence Length = 163370 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 cctttccttccctgccctgc 368 |||||||||||||||||||| Sbjct: 108080 cctttccttccctgccctgc 108099
>emb|CR855279.1| Human DNA sequence from clone XX-NCIH2171_16D15, complete sequence Length = 122131 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ttccttgcctttccttccct 361 |||||||||||||||||||| Sbjct: 97621 ttccttgcctttccttccct 97602
>gb|AC117532.2| Homo sapiens chromosome 5 clone RP11-648M2, complete sequence Length = 177782 Score = 40.1 bits (20), Expect = 6.3 Identities = 36/40 (90%), Gaps = 1/40 (2%) Strand = Plus / Minus Query: 334 cttctcccttcc-ttgcctttccttccctgccctgccttt 372 |||||||||||| || ||||||||||||| |||| ||||| Sbjct: 33128 cttctcccttcccttccctttccttcccttcccttccttt 33089
>emb|CR622714.1| full-length cDNA clone CS0DA010YA09 of Neuroblastoma of Homo sapiens (human) Length = 1484 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 43 cgcggcgcggcgccccctcc 24
>emb|CR621116.1| full-length cDNA clone CS0DA009YP11 of Neuroblastoma of Homo sapiens (human) Length = 1307 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 39 cgcggcgcggcgccccctcc 20
>emb|CR619875.1| full-length cDNA clone CS0DC013YF20 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1273 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 46 cgcggcgcggcgccccctcc 27
>emb|CR611886.1| full-length cDNA clone CS0DL002YK03 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1479 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 49 cgcggcgcggcgccccctcc 30
>emb|CR608282.1| full-length cDNA clone CS0DC018YA17 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1270 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 39 cgcggcgcggcgccccctcc 20
>gb|AC091683.53| Mus musculus strain C57BL/6J clone rp23-155l11 map 13, complete sequence Length = 236314 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 344 ccttgcctttccttccctgccctgcctt 371 ||||||||| ||||||||||| |||||| Sbjct: 207595 ccttgccttgccttccctgccttgcctt 207622
>emb|CR601393.1| full-length cDNA clone CS0DL008YF01 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1286 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 60 cgcggcgcggcgccccctcc 41
>emb|CR601092.1| full-length cDNA clone CS0DC009YL02 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1268 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 23 cgcggcgcggcgccccctcc 4
>gb|AE011984.1| Xanthomonas axonopodis pv. citri str. 306, section 362 of 469 of the complete genome Length = 13510 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 acggccaccaccgcgcggcg 40 |||||||||||||||||||| Sbjct: 3004 acggccaccaccgcgcggcg 3023
>gb|AC139035.12| Mus musculus chromosome 5, clone RP23-348E9, complete sequence Length = 237627 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 tcccttccttgcctttccttccct 361 |||||||||| ||||||||||||| Sbjct: 164345 tcccttccttccctttccttccct 164368
>gb|AC092544.4| Homo sapiens BAC clone RP11-317F4 from 4, complete sequence Length = 159263 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 cttctcccttccttgcctttcctt 357 |||||||||||||| ||||||||| Sbjct: 114344 cttctcccttcctttcctttcctt 114321 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 cttctcccttccttgcctttcctt 357 |||||||||||||| ||||||||| Sbjct: 114226 cttctcccttcctttcctttcctt 114203
>gb|AC093429.2| Homo sapiens chromosome 1 clone RP11-465K1, complete sequence Length = 182165 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 349 cctttccttccctgccctgccttttttctttc 380 ||||||||||||| |||| |||| |||||||| Sbjct: 173462 cctttccttcccttcccttccttctttctttc 173493
>gb|AC162923.2| Mus musculus BAC clone RP23-304O17 from chromosome 17, complete sequence Length = 192669 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 353 tccttccctgccctgccttttttctttc 380 ||||||||||||||||| | |||||||| Sbjct: 92611 tccttccctgccctgccctctttctttc 92584
>emb|AJ224868.1|HSA224868 Homo sapiens GNAS1 gene Length = 2479 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gaggccccgccaccttcccc 238 |||||||||||||||||||| Sbjct: 2185 gaggccccgccaccttcccc 2166
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ccgcgcggcgcggcgccccc 50 |||||||||||||||||||| Sbjct: 1269038 ccgcgcggcgcggcgccccc 1269057
>gb|AC155650.5| Mus musculus 6 BAC RP24-151E20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155455 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 tcccttccttgcctttccttccct 361 |||||||||| ||||||||||||| Sbjct: 62112 tcccttcctttcctttccttccct 62089
>gb|AC018470.11| Homo sapiens BAC clone RP11-572N21 from 2, complete sequence Length = 174437 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 tcccttccttgcctttccttccct 361 |||||||||| ||||||||||||| Sbjct: 150450 tcccttccttccctttccttccct 150427
>gb|AC138185.2| Homo sapiens chromosome 8, clone RP11-640O8, complete sequence Length = 152309 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tcttctcccttccttgcctt 352 |||||||||||||||||||| Sbjct: 13222 tcttctcccttccttgcctt 13241
>gb|AC008050.6|AC008050 Homo sapiens chromosome 14 clone RP11-141I24 map 14q24.3, complete sequence Length = 176975 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 tcccttccttgcctttccttccct 361 |||||||||| ||||||||||||| Sbjct: 54133 tcccttcctttcctttccttccct 54156
>ref|NM_001013440.1| Homo sapiens mercaptopyruvate sulfurtransferase (MPST), transcript variant 1, mRNA Length = 1626 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 170 cgcggcgcggcgccccctcc 151
>ref|NM_021126.4| Homo sapiens mercaptopyruvate sulfurtransferase (MPST), transcript variant 2, mRNA Length = 1450 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 170 cgcggcgcggcgccccctcc 151
>gb|AC125603.7| Homo sapiens 12 BAC RP11-497G19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151111 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 341 cttccttgcctttccttccctgccctgccttt 372 ||||||| ||||||||||||| |||| ||||| Sbjct: 82019 cttccttccctttccttcccttcccttccttt 82050
>emb|AJ251760.1|HSA251760 Homo sapiens NESP55, GNAS1 antisense (partial) and XLalphas (partial) genes Length = 20924 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gaggccccgccaccttcccc 238 |||||||||||||||||||| Sbjct: 16778 gaggccccgccaccttcccc 16759
>emb|AL132801.5|CNS01DTN Human chromosome 14 DNA sequence BAC R-661D19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168624 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 ttccctgccctgcctttttt 375 |||||||||||||||||||| Sbjct: 100482 ttccctgccctgcctttttt 100463
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 cggccaccaccgcgcggcgcggcg 45 ||||||| |||||||||||||||| Sbjct: 3382567 cggccacgaccgcgcggcgcggcg 3382590
>dbj|AP005856.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1568E2, complete sequence Length = 160612 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tcttctcccttccttgcctt 352 |||||||||||||||||||| Sbjct: 11992 tcttctcccttccttgcctt 12011
>gb|AC170597.2| Mus musculus BAC clone RP23-391A19 from chromosome 13, complete sequence Length = 223662 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 tccttgcctttccttccctgccct 366 ||||| |||||||||||||||||| Sbjct: 56203 tcctttcctttccttccctgccct 56226
>gb|AC132311.2| Mus musculus BAC clone RP24-297P22 from 8, complete sequence Length = 164783 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 335 ttctcccttccttgcctttccttccctgccct 366 |||||| |||||| ||||||||||||| |||| Sbjct: 18188 ttctcctttcctttcctttccttccctcccct 18157
>gb|AC153998.2| Mus musculus 6 BAC RP24-278I6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 166019 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tgcctttccttccctgccct 366 |||||||||||||||||||| Sbjct: 71724 tgcctttccttccctgccct 71705
>gb|AC125070.4| Mus musculus BAC clone RP23-443A7 from 13, complete sequence Length = 208344 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 ccttgcctttccttccctgccctgcctt 371 ||||||||| ||||||||||| |||||| Sbjct: 149053 ccttgccttgccttccctgccttgcctt 149026
>dbj|AB208824.1| Homo sapiens mRNA for 3-mercaptopyruvate sulfurtransferase variant protein Length = 5873 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgcggcgcggcgccccctcc 53 |||||||||||||||||||| Sbjct: 33 cgcggcgcggcgccccctcc 14
>emb|AL672105.16| Mouse DNA sequence from clone RP23-326D14 on chromosome X, complete sequence Length = 172363 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 ctcccttccttgcctttccttccc 360 ||||||||||| |||||||||||| Sbjct: 124515 ctcccttcctttcctttccttccc 124492
>emb|AL513345.20| Mouse DNA sequence from clone RP23-129N7 on chromosome 15, complete sequence Length = 217225 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 ccttgcctttccttccctgccctgcctt 371 ||||||||||||| ||||||||| |||| Sbjct: 117478 ccttgcctttcctcccctgcccttcctt 117451 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,771,582 Number of Sequences: 3902068 Number of extensions: 3771582 Number of successful extensions: 90919 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 88586 Number of HSP's gapped (non-prelim): 2334 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)