>KRUC_SHEEP (P26372) Keratin, ultra high-sulfur matrix protein (UHS keratin)|
          Length = 182

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -2

Query: 112 CSAGCAWECAFVDWIGVRGAARVCSSSCCWAFLCC 8
           CS GC   C      G       CSSSCC    CC
Sbjct: 6   CSGGCGSSCG-----GCGSRCGGCSSSCCVPVCCC 35

>PAX8_RAT (P51974) Paired box protein Pax-8|
          Length = 458

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 277 PAVASDPAPPQRILRQPFLDLVMVGSGGSLAPHLP 173
           P ++S  + P  +    FLDL  VGSGG     +P
Sbjct: 314 PELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASVP 348

>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein|
           5.8) (Ultrahigh sulfur keratin-associated protein 5.8)
           (Keratin, ultra high-sulfur matrix protein B) (UHS
           keratin B) (UHS KerB)
          Length = 187

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -2

Query: 112 CSAGCAWECAFVDWIGVRGAARVCSSSCCWAFLCC 8
           CS GC   C      G       C SSCC    CC
Sbjct: 6   CSGGCGSGCG-----GCGSGCGGCGSSCCVPICCC 35

>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -2

Query: 112 CSAGCAWECAFVDWIGVRGAARVCSSSCCWAFLCC 8
           CS GC   C      G       C SSCC    CC
Sbjct: 6   CSGGCGSGCG-----GCGSGCGGCGSSCCVPICCC 35

>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein|
           5.9) (Ultrahigh sulfur keratin-associated protein 5.9)
           (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
           high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
          Length = 169

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = -2

Query: 112 CSAGCAWECAFVDW-IGVRGAA-RVCSSSCCWAFLCC 8
           CS GC   C   D   G  G+  R C  SCC    CC
Sbjct: 6   CSGGCGSSCGGCDSSCGSCGSGCRGCGPSCCAPVYCC 42

>SPC98_YEAST (P53540) Spindle pole body component SPC98|
          Length = 846

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 239 LEAAVLGLGHGRIGW 195
           L+A VL LGHG +GW
Sbjct: 541 LDARVLDLGHGSVGW 555

>Y066_NPVLD (P30325) Hypothetical protein in POL 5'region (Fragment)|
          Length = 369

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 292 VSGSEPAVASDPAPPQRILRQPFLDLVMVGSGGSLA 185
           ++ SEP  AS P+PP+     P    V + S G  A
Sbjct: 120 IAPSEPTPASAPSPPKADAPNPIQQNVYINSAGEAA 155


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,642,674
Number of Sequences: 219361
Number of extensions: 335053
Number of successful extensions: 1233
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)