ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl55f10 |
|---|---|
| Clone Library Name | barley_pub |
>SNX11_MOUSE (Q91WL6) Sorting nexin-11| Length = 271 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/63 (28%), Positives = 29/63 (46%) Frame = -2 Query: 362 RATPPLPPPFVSGRQSGLSLWYLIMPNAGTAFSLDELVDAASLPIAWTSRRPRIKIGLRP 183 R + P PP +S + L W +M + G + L+ ++SLP W RP + + Sbjct: 189 RRSSPSPP--LSEEKEQLETWAPVMDSEGPSSESPTLLPSSSLPACWDPARPEEGLSVSQ 246 Query: 182 TAR 174 AR Sbjct: 247 PAR 249
>PPE30_MYCTU (P0A692) Hypothetical PPE-family protein PPE30| Length = 463 Score = 32.0 bits (71), Expect = 0.37 Identities = 29/89 (32%), Positives = 38/89 (42%) Frame = +1 Query: 100 VRSVQTNGRGRRE*LLSAGGRNLPSRAVGRRPILMRGLLEVHAIGRDAASTSSSKLKAVP 279 +RS ++G G +SAG S VG + AI AA SS+ L+AVP Sbjct: 292 LRSAISSGLGSTAPAISAGASQAGS--VGGMSVPPSWAAATPAIRTVAAVFSSTGLQAVP 349 Query: 280 ALGMMRYQRLSPDCLPLTNGGGSGGVARK 366 A + LS L GG GG A + Sbjct: 350 AAAISEGSLLSQMALASVAGGALGGAAAR 378
>PPE30_MYCBO (P0A693) Hypothetical PPE-family protein PPE30| Length = 463 Score = 32.0 bits (71), Expect = 0.37 Identities = 29/89 (32%), Positives = 38/89 (42%) Frame = +1 Query: 100 VRSVQTNGRGRRE*LLSAGGRNLPSRAVGRRPILMRGLLEVHAIGRDAASTSSSKLKAVP 279 +RS ++G G +SAG S VG + AI AA SS+ L+AVP Sbjct: 292 LRSAISSGLGSTAPAISAGASQAGS--VGGMSVPPSWAAATPAIRTVAAVFSSTGLQAVP 349 Query: 280 ALGMMRYQRLSPDCLPLTNGGGSGGVARK 366 A + LS L GG GG A + Sbjct: 350 AAAISEGSLLSQMALASVAGGALGGAAAR 378
>GUDB_BACSU (P50735) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)| (NAD-GDH) Length = 426 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +1 Query: 247 STSSSKLKAVPALGMMRYQRLSPDCLPLTNGGGSGGVARKPASRSFRD 390 + + ++KAV AL + + L + L GGG GG+ P SFR+ Sbjct: 87 NVTEKEVKAVKALSI--WMSLKCGIIDLPYGGGKGGIVCDPRDMSFRE 132
>YL37_CAEEL (P34428) Hypothetical protein F44B9.7| Length = 466 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = +3 Query: 210 PPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPPA 329 PP GP + G ++ + +R G P PG+PP+ Sbjct: 49 PPGGPPPFMGIQIKQEPMWSQENRYGMQAGPSGMPGMPPS 88
>YNE1_CAEEL (P30640) Hypothetical protein R08D7.1| Length = 458 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = -1 Query: 249 RRGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSPSPVRLHG--TNKRRTRNLQ 76 RR P R D ++ N PP NRSRR +S + SSP+ R + R++R ++ Sbjct: 177 RRSPPRTRRDRHDS--DNSPPRNRSRRDSDNSPPRRRPSSPARRRKDDDLSPPRKSRKIE 234 Query: 75 E 73 E Sbjct: 235 E 235
>OBF1_MOUSE (Q64693) POU domain class 2, associating factor 1 (B-cell-specific| coactivator OBF-1) (OCT binding factor 1) (BOB-1) (BOB1) (OCA-B) Length = 256 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +3 Query: 183 WPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQP 314 W ++ P PR +QG RV E ++ R + GH V A P Sbjct: 3 WQKSTAPEQAPAPPRPYQGVRVKEPVKELLRRKRGHTSVGAAGP 46
>VGLC_PRVIF (P06024) Glycoprotein GIII precursor| Length = 479 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -2 Query: 374 EAGLRATPPLPPPFVSGRQ 318 EAG +TPP+PPP VS R+ Sbjct: 60 EAGAVSTPPVPPPSVSRRK 78
>VSGP_EBOSM (P60173) Pre-small/secreted glycoprotein precursor (pre-sGP)| [Contains: Small/secreted glycoprotein (sGP); Delta-peptide] Length = 372 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/53 (28%), Positives = 22/53 (41%) Frame = +3 Query: 75 PVNFVSASCSFRADEREREKRVIAQRRRKEPAFSSGWPEANFDAWPPRGPRDW 233 P N+V SC + R+K ++ RR + S P + W R P W Sbjct: 298 PNNYVEKSCLSKLYRSTRQKTMMRHRRELQREESPTGPPGSIRTWFQRIPLGW 350
>VSGP_EBOSB (P60172) Pre-small/secreted glycoprotein precursor (pre-sGP)| [Contains: Small/secreted glycoprotein (sGP); Delta-peptide] Length = 372 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/53 (28%), Positives = 22/53 (41%) Frame = +3 Query: 75 PVNFVSASCSFRADEREREKRVIAQRRRKEPAFSSGWPEANFDAWPPRGPRDW 233 P N+V SC + R+K ++ RR + S P + W R P W Sbjct: 298 PNNYVEKSCLSKLYRSTRQKTMMRHRRELQREESPTGPPGSIRTWFQRIPLGW 350
>SWC4_CRYNE (Q5KG22) SWR1-complex protein 4| Length = 463 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Frame = -2 Query: 350 PLPPPFVSGR------QSGLSLWYLIMPNAGTAFSLDELVDAASLPIAWTSRRPRIKIGL 189 PLP P +GR + GLS L+MP + L++AA+ + + R++ L Sbjct: 359 PLPKPTAAGRITDLLAELGLSANRLVMPTRQNMEVFEGLLNAAAALVEMRRQVNRVEQEL 418 Query: 188 RPTAREGRFLPPALSNHS 135 R + L P +N S Sbjct: 419 RVVRMQKEGLMPVTTNPS 436
>DOF37_ARATH (Q43385) Dof zinc finger protein DOF3.7 (AtDOF3.7) (Dof affecting| germination 1) (Transcription factor BBFa) (AtBBFa) (RolB domain B factor a) Length = 296 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/69 (23%), Positives = 28/69 (40%) Frame = -1 Query: 306 PLVPHHAQCGNGFQFG*ARRRGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSP 127 P +P + Q N F +G+ N ++ + N N + R + + LSS Sbjct: 213 PTMPDYKQSNNNLSFSIDHHQGIGHNTINSNQRAQDNNDDMNGASRVLFPFSDMKELSST 272 Query: 126 SPVRLHGTN 100 + + HG N Sbjct: 273 TQEKSHGNN 281
>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)| Length = 1845 Score = 25.4 bits (54), Expect(2) = 4.8 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = -1 Query: 207 THQNWPPANRSRRQVPSSCAEQSLSSPSPVRLHGTNKRRTR 85 TH+ P A+RSRR+ PS + P+ V GT +R TR Sbjct: 266 THETRPSASRSRRRSPSPRRPATPPKPAAV---GT-RRSTR 302 Score = 21.2 bits (43), Expect(2) = 4.8 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = -2 Query: 392 SSLKDLEAGLRATPPLPPPFVSGRQS 315 SS A + PP PPP R+S Sbjct: 238 SSSNSKHAPAKMPPPPPPPKAPARKS 263
>YMF9_YEAST (Q04958) Hypothetical UPF0028 protein YML059c| Length = 1679 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 Query: 289 MMRYQRLSPDCLPLTNGGGSGGVA 360 + +Y+RL+P+ LPL N G SG A Sbjct: 129 LSQYKRLTPEFLPLENTGKSGSSA 152
>YAV1_XANCV (P14727) Hypothetical 122 kDa avirulence protein in avrBs3 region| Length = 1164 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = -2 Query: 287 PNAGTAFSL--DELVDAASLPIAWTSRRPRIKIG 192 P+A +F + E DA LP++W +RPR IG Sbjct: 1078 PSAQQSFEVRVPEQRDALHLPLSWRVKRPRTSIG 1111
>INSM_ECOLI (Q47718) Transposase insM for insertion sequence element IS600| Length = 198 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +1 Query: 130 RRE*LLSAG--GRNLPSRAVGRRPILMRGLLEVHAIGRDAASTSS 258 R+E L++G +N P + GRR +L +LE+H I +A S Sbjct: 6 RKECPLNSGYLRKNRPEKPDGRRAVLRSQVLELHGISHGSAGARS 50
>PTSRA_XENLA (Q6GND3) Protein PTDSR-A| Length = 403 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Frame = -1 Query: 234 ANRVDLEEAT----HQNWPPANRSRRQVPSSCAEQSLSSPSPVRLHGTNKRRTRNLQE 73 A+ VDL+EAT + ++ S SC+E LSS + + H KR+ ++ E Sbjct: 327 ADTVDLQEATGIASDSSSDSSSSSSSSSSESCSEDDLSSGAEMMSHRKKKRKICSVME 384
>NIFY_AZOBR (P25315) Protein nifY| Length = 227 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 195 WPPANRSRRQVPSSCAEQSLSSPSPVRLH 109 WPP R RR +P++ +S SS +LH Sbjct: 37 WPPCPRPRRGLPAATTSRSPSSRPTPQLH 65
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2160 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/58 (32%), Positives = 24/58 (41%) Frame = +3 Query: 153 RRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPP 326 + +E A S P + RD GR DEL +S+ GHD QP PP Sbjct: 184 KERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGALQPSGPP 241
>CCND2_ARATH (P42752) Cyclin delta-2| Length = 361 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -1 Query: 246 RGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSPSPVRLHGTNKRRTR 85 R VPA+ V + EAT ++ RS + SC S SSP + + +R R Sbjct: 310 RAVPASPVGVLEATCLSY----RSEERTVESCTNSSQSSPDNNNNNNNSNKRRR 359
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2161 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/58 (32%), Positives = 24/58 (41%) Frame = +3 Query: 153 RRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPP 326 + +E A S P + RD GR DEL +S+ GHD QP PP Sbjct: 184 KERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPP 241
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2157 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/58 (32%), Positives = 24/58 (41%) Frame = +3 Query: 153 RRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPP 326 + +E A S P + RD GR DEL +S+ GHD QP PP Sbjct: 184 KERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPP 241
>CED7_CAEEL (P34358) ABC transporter ced-7 (Cell death protein 7)| Length = 1704 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 237 GRRVDELIQTESRSRIGHDEVPKAQPGLPPA 329 G +VD+ I + SRI H+ ++P L PA Sbjct: 878 GDKVDKAIASRQNSRISHNSRNASEPSLKPA 908
>Y335_MYCPN (P75443) Hypothetical protein MPN335 (F10_orf741)| Length = 741 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/86 (18%), Positives = 35/86 (40%) Frame = +3 Query: 66 QFFPVNFVSASCSFRADEREREKRVIAQRRRKEPAFSSGWPEANFDAWPPRGPRDWQGRR 245 +FF + + + A+E+ER+++ ++ K+ + N + P Sbjct: 390 KFFSDTIIQSFRDYEAEEKERQEKEEKEKAEKDNGNGQDSNKVNSVSTEPNNKNSSDADS 449 Query: 246 VDELIQTESRSRIGHDEVPKAQPGLP 323 D ++S+ + PK +P LP Sbjct: 450 KDNNDSSDSQGKDSSKSKPKFRPRLP 475
>LPIN2_MOUSE (Q99PI5) Lipin-2| Length = 893 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Frame = +3 Query: 171 FSSGWPEANFDAW-----PPRGPRDWQGRRVDELIQTESRSRIGHDEVPKA 308 F P+A ++W P + R W R+ + +I+ ++ G EVP A Sbjct: 531 FQKSLPKATVESWVKDKMPKKSGRWWFWRKKESMIKQLPETKEGKSEVPPA 581
>CAC1H_RAT (Q9EQ60) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2359 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +1 Query: 277 PALGMMRYQRLSPDCLPLTNGGGSGGVARKPAS 375 PALG R +++SP C+ + G +R PA+ Sbjct: 2184 PALGSRRKKKMSPPCISIEPPTKDEGSSRPPAA 2216
>K1210_HUMAN (Q9ULL0) Protein KIAA1210| Length = 1093 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = -1 Query: 255 ARRRGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSPS 124 A+ G P N+ ++ A++ N +Q+PS C Q + +P+ Sbjct: 263 AQALGKPKNQQEVSSASNNTPEEQNDFMQQLPSRCPSQPIMNPT 306
>CAC1H_MOUSE (O88427) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2365 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +1 Query: 277 PALGMMRYQRLSPDCLPLTNGGGSGGVARKPAS 375 PALG R +++SP C+ + G +R PA+ Sbjct: 2190 PALGARRKKKMSPPCISIDPPTEDEGSSRPPAA 2222
>PRP40_MOUSE (Q9R1C7) Pre-mRNA-processing factor 40 homolog A (Formin-binding| protein 3) (Formin-binding protein 11) (FBP 11) Length = 953 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Frame = +3 Query: 111 ADEREREKRVIAQRRRKEPAFSS----GWPEANFDA-WPPRGPRDWQGRRVDELIQTESR 275 A EREREK + +RKE AF S P DA W R + +++ R Sbjct: 726 AREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESER 785 Query: 276 SRIGHD 293 RI D Sbjct: 786 KRIFKD 791
>PAX6_DROME (O18381) Paired box protein Pax-6 (Protein eyeless)| Length = 857 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 240 VPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSS 130 V N L++ Q+WPP + S P+S +E +SS Sbjct: 304 VHGNHQALQQHQQQSWPPRHYSGSWYPTSLSEIPISS 340 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,869,487 Number of Sequences: 219361 Number of extensions: 1083335 Number of successful extensions: 4569 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4567 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
