ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl55f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4,... 88 3e-14
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
3dbj|AK100925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
5dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
6dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
7ref|XM_532310.2| PREDICTED: Canis familiaris hypothetical LOC475... 44 0.40
8gb|AC138228.10| Mus musculus chromosome 17, clone RP23-304G12, c... 44 0.40
9emb|AL596223.3| Human DNA sequence from clone RP11-227H15 on chr... 44 0.40
10gb|AF016349.2|H006101S06 Homo sapiens hexokinase I (HK1) gene, e... 44 0.40
11gb|AC091485.8| Homo sapiens BAC clone RP11-434N4 from 2, complet... 44 0.40
12emb|CT033797.5| Mouse DNA sequence from clone RP23-451J17 on chr... 44 0.40
13gb|AF029305.1|SEG_HSHKRI2 Homo sapiens hexokinase (HK) gene, iso... 44 0.40
14dbj|AB209526.1| Homo sapiens mRNA for hexokinase 1 isoform HKI v... 44 0.40
15emb|AL590630.20| Mouse DNA sequence from clone RP23-353A15 on ch... 44 0.40
16gb|AF267536.2| Takifugu rubripes NKX2.9 (nkx2.9) gene, exons 1 a... 42 1.6
17emb|CR626912.1| Human DNA sequence from clone XX-NCIH2171_5A23, ... 42 1.6
18gb|AC023095.8| Homo sapiens chromosome 8, clone RP11-26L21, comp... 42 1.6
19emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chr... 42 1.6
20emb|BX322795.7| Zebrafish DNA sequence from clone CH211-106E12 i... 42 1.6
21emb|AL627122.18| Mouse DNA sequence from clone RP23-132E8 on chr... 42 1.6
22gb|AC168315.2| Mus musculus BAC clone RP23-318O7 from chromosome... 40 6.2
23ref|NM_193976.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
24gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, co... 40 6.2
25gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, co... 40 6.2
26emb|CT025848.6| Mouse DNA sequence from clone RP24-326K2 on chro... 40 6.2
27gb|AC100724.10| Mus musculus chromosome 17, clone RP24-120E11, c... 40 6.2
28gb|AC122855.4| Mus musculus BAC clone RP23-120H20 from chromosom... 40 6.2
29gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome... 40 6.2
30gb|AC006481.3| Homo sapiens BAC clone RP11-174K5 from 7, complet... 40 6.2
31emb|AL928636.8| Human DNA sequence from clone RP13-417F5 on chro... 40 6.2
32emb|AL355353.23| Human DNA sequence from clone RP11-385F7 on chr... 40 6.2
33gb|AC125257.4| Homo sapiens chromosome , clone RP11-229E13, comp... 40 6.2
34emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 40 6.2
35emb|AL596084.13| Mouse DNA sequence from clone RP23-196B5 on chr... 40 6.2
36dbj|AK137799.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 6.2
37gb|AC093484.2| Homo sapiens chromosome , clone RP11-138I1, compl... 40 6.2
38gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome... 40 6.2
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
40gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, compl... 40 6.2
41gb|AC084018.28| Homo sapiens 12 BAC RP11-347I19 (Roswell Park Ca... 40 6.2
42gb|BC035884.1| Homo sapiens, clone IMAGE:4991579, mRNA 40 6.2
43gb|AC091172.11| Homo sapiens chromosome 17, clone RP11-156E6, co... 40 6.2
44dbj|AP003207.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
45dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
46emb|BX648084.1|HSM808230 Homo sapiens mRNA; cDNA DKFZp686L016 (f... 40 6.2
47dbj|AK120976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
48gb|AC154461.2| Mus musculus BAC clone RP24-163I13 from 14, compl... 40 6.2
49emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on ch... 40 6.2
50gb|AC109606.11| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 6.2
51gb|AC133158.2| Mus musculus BAC clone RP24-491F15 from 8, comple... 40 6.2
52gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complet... 40 6.2
53emb|AL391834.8| Human DNA sequence from clone RP11-513M16 on chr... 40 6.2
54emb|AL672202.9| Mouse DNA sequence from clone RP23-147L19 on chr... 40 6.2 
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
             complete sequence
          Length = 166804

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 63/68 (92%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                         
Query: 395   gccgccgcctaggatggagctggactcctccggcggctgctcggctgct-ccgcggatgc 453
             |||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||| 
Sbjct: 91063 gccgccgtataggatggagctggattcctccggcggctgctcggctgctcccgcggatgg 91004

                     
Query: 454   tgtgatcg 461
             ||||||||
Sbjct: 91003 tgtgatcg 90996
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 63/68 (92%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                            
Query: 395      gccgccgcctaggatggagctggactcctccggcggctgctcggctgct-ccgcggatgc 453
                |||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||| 
Sbjct: 30457686 gccgccgtataggatggagctggattcctccggcggctgctcggctgctcccgcggatgg 30457627

                        
Query: 454      tgtgatcg 461
                ||||||||
Sbjct: 30457626 tgtgatcg 30457619
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>dbj|AK100925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134G14, full
           insert sequence
          Length = 3611

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 63/68 (92%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                       
Query: 395 gccgccgcctaggatggagctggactcctccggcggctgctcggctgct-ccgcggatgc 453
           |||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||| 
Sbjct: 471 gccgccgtataggatggagctggattcctccggcggctgctcggctgctcccgcggatgg 530

                   
Query: 454 tgtgatcg 461
           ||||||||
Sbjct: 531 tgtgatcg 538
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 396      ccgccgcctaggatggagctggactcctccggcggc 431
                ||||||||||||||| ||||||||||| ||||||||
Sbjct: 28966562 ccgccgcctaggatgcagctggactccgccggcggc 28966527
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>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0724B10
          Length = 169143

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 396   ccgccgcctaggatggagctggactcctccggcggc 431
             ||||||||||||||| ||||||||||| ||||||||
Sbjct: 12727 ccgccgcctaggatgcagctggactccgccggcggc 12692
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>dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1218_D07
          Length = 114511

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 396   ccgccgcctaggatggagctggactcctccggcggc 431
             ||||||||||||||| ||||||||||| ||||||||
Sbjct: 49620 ccgccgcctaggatgcagctggactccgccggcggc 49585
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>ref|XM_532310.2| PREDICTED: Canis familiaris hypothetical LOC475076 (LOC475076), mRNA
          Length = 2019

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 25   gccgaggccgaggcgaggcggg 46
            ||||||||||||||||||||||
Sbjct: 1762 gccgaggccgaggcgaggcggg 1783
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>gb|AC138228.10| Mus musculus chromosome 17, clone RP23-304G12, complete sequence
          Length = 225739

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 217   ccccacctccctcccactgctc 238
             ||||||||||||||||||||||
Sbjct: 31300 ccccacctccctcccactgctc 31321
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>emb|AL596223.3| Human DNA sequence from clone RP11-227H15 on chromosome 10 Contains 3'
              end of the VPS26 gene for vacuolar protein sorting 26
              (yeast) (HB58, Hbeta58, FLJ12930), the SUPV3L1 gene for
              suppressor of var1, 3-like 1 (S. cerevisiae)(SUV3), the
              gene for a novel hexokinase domain containing protein
              (FLJ37767), the 5' end of the HK1 gene for hexokinase 1
              (HKI, HXK1), two novel genes, a ribosomal protein S15a
              (RPS15A) pseudogene and two CpG islands, complete sequence
          Length = 180548

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 420    tcctccggcggctgctcggctgctcc 445
              |||||||||||||||||||| |||||
Sbjct: 149978 tcctccggcggctgctcggcggctcc 149953
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>gb|AF016349.2|H006101S06 Homo sapiens hexokinase I (HK1) gene, exon 1R and exon 1,
            alternatively spliced
          Length = 4400

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 420  tcctccggcggctgctcggctgctcc 445
            |||||||||||||||||||| |||||
Sbjct: 3933 tcctccggcggctgctcggcggctcc 3908
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>gb|AC091485.8| Homo sapiens BAC clone RP11-434N4 from 2, complete sequence
          Length = 112063

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 213   ccacccccacctccctcccact 234
             ||||||||||||||||||||||
Sbjct: 49726 ccacccccacctccctcccact 49747
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>emb|CT033797.5| Mouse DNA sequence from clone RP23-451J17 on chromosome 17, complete
             sequence
          Length = 177126

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 217   ccccacctccctcccactgctc 238
             ||||||||||||||||||||||
Sbjct: 33744 ccccacctccctcccactgctc 33723
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>gb|AF029305.1|SEG_HSHKRI2 Homo sapiens hexokinase (HK) gene, isozyme I, partial cds
          Length = 515

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 420 tcctccggcggctgctcggctgctcc 445
           |||||||||||||||||||| |||||
Sbjct: 258 tcctccggcggctgctcggcggctcc 233
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>dbj|AB209526.1| Homo sapiens mRNA for hexokinase 1 isoform HKI variant protein
          Length = 3595

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 420 tcctccggcggctgctcggctgctcc 445
           |||||||||||||||||||| |||||
Sbjct: 27  tcctccggcggctgctcggcggctcc 2
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>emb|AL590630.20| Mouse DNA sequence from clone RP23-353A15 on chromosome 8, complete
              sequence
          Length = 207705

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 207    gccagtccacccccacctccct 228
              ||||||||||||||||||||||
Sbjct: 151128 gccagtccacccccacctccct 151149
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>gb|AF267536.2| Takifugu rubripes NKX2.9 (nkx2.9) gene, exons 1 and 2 and complete
            cds; and Pax9 (pax9) gene, exons 1 through 4 and complete
            cds
          Length = 24431

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 325  ccgccgcgcagggcccggagcacgg 349
            |||||||||||||||||||| ||||
Sbjct: 8629 ccgccgcgcagggcccggaggacgg 8605
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>emb|CR626912.1| Human DNA sequence from clone XX-NCIH2171_5A23, complete sequence
          Length = 109071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    gaagaaatttcccaagggaat 91
             |||||||||||||||||||||
Sbjct: 46958 gaagaaatttcccaagggaat 46978
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>gb|AC023095.8| Homo sapiens chromosome 8, clone RP11-26L21, complete sequence
          Length = 157178

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     gaagaaatttcccaagggaat 91
              |||||||||||||||||||||
Sbjct: 103355 gaagaaatttcccaagggaat 103335
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>emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chromosome 21, complete
              sequence
          Length = 278310

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 213    ccacccccacctccctcccactgct 237
              ||||||||||||||||||| |||||
Sbjct: 270461 ccacccccacctccctccctctgct 270485
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>emb|BX322795.7| Zebrafish DNA sequence from clone CH211-106E12 in linkage group 3,
              complete sequence
          Length = 173658

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                               
Query: 213    ccacccccacctccctcccac-tgctctctatc 244
              ||||||| ||||||||||||| |||||||||||
Sbjct: 170851 ccacccctacctccctcccacatgctctctatc 170883
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>emb|AL627122.18| Mouse DNA sequence from clone RP23-132E8 on chromosome 4, complete
              sequence
          Length = 166814

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 213    ccacccccacctccctcccactgct 237
              ||||||||||||||||||| |||||
Sbjct: 161029 ccacccccacctccctccctctgct 161053
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>gb|AC168315.2| Mus musculus BAC clone RP23-318O7 from chromosome 10, complete sequence
          Length = 189627

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   ccacccccacctccctccca 232
             ||||||||||||||||||||
Sbjct: 41511 ccacccccacctccctccca 41492
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>ref|NM_193976.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1494

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 321 tccgccgccgcgcagggccc 340
           ||||||||||||||||||||
Sbjct: 184 tccgccgccgcgcagggccc 203
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>gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, complete sequence
          Length = 170539

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    cccacctccctcccactgctctct 241
              ||||||||||||||||||| ||||
Sbjct: 108088 cccacctccctcccactgccctct 108065
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>gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, complete sequence
          Length = 188060

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 218   cccacctccctcccactgctctct 241
             ||||||||||||||||||| ||||
Sbjct: 25754 cccacctccctcccactgccctct 25731
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>emb|CT025848.6| Mouse DNA sequence from clone RP24-326K2 on chromosome 17, complete
             sequence
          Length = 172896

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 215   acccccacctccctcccactgctctctatccc 246
             ||||| ||| ||||||||||||||| ||||||
Sbjct: 23709 accccgaccaccctcccactgctctgtatccc 23740
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>gb|AC100724.10| Mus musculus chromosome 17, clone RP24-120E11, complete sequence
          Length = 179334

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 215   acccccacctccctcccactgctctctatccc 246
             ||||| ||| ||||||||||||||| ||||||
Sbjct: 86550 accccgaccaccctcccactgctctgtatccc 86519
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>gb|AC122855.4| Mus musculus BAC clone RP23-120H20 from chromosome 14, complete
             sequence
          Length = 202424

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tccacccccacctccctccc 231
             ||||||||||||||||||||
Sbjct: 37682 tccacccccacctccctccc 37663
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>gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome 14, complete sequence
          Length = 179789

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tccacccccacctccctccc 231
             ||||||||||||||||||||
Sbjct: 25182 tccacccccacctccctccc 25201
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>gb|AC006481.3| Homo sapiens BAC clone RP11-174K5 from 7, complete sequence
          Length = 150052

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    aagaaatttcccaagggaat 91
             ||||||||||||||||||||
Sbjct: 58528 aagaaatttcccaagggaat 58509
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>emb|AL928636.8| Human DNA sequence from clone RP13-417F5 on chromosome X, complete
              sequence
          Length = 171922

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    ccacccccacctccctccca 232
              ||||||||||||||||||||
Sbjct: 140792 ccacccccacctccctccca 140773
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>emb|AL355353.23| Human DNA sequence from clone RP11-385F7 on chromosome 6 Contains the
             5' end of the CD2AP gene for CD2-associated protein and
             three CpG islands, complete sequence
          Length = 141605

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     ggaaaagccaaggaaaatag 25
             ||||||||||||||||||||
Sbjct: 60062 ggaaaagccaaggaaaatag 60043
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>gb|AC125257.4| Homo sapiens chromosome , clone RP11-229E13, complete sequence
          Length = 159726

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    cccccacctccctcccactg 235
              ||||||||||||||||||||
Sbjct: 125436 cccccacctccctcccactg 125417
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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 410    ggagctggactcctccggcggctg 433
              |||||||||| |||||||||||||
Sbjct: 267300 ggagctggacacctccggcggctg 267277
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>emb|AL596084.13| Mouse DNA sequence from clone RP23-196B5 on chromosome 11 Contains
            the Pank3 gene for pantothenate kinase 3, a pseudogene
            similar to part of ribosomal protein L7a (Rpl7a), a
            pseudogene similar to part of fibrillarin (Fbl), the Rars
            gene for arginyl-tRNA synthetase, the 3' end of the gene
            for a novel protein similar to human KIBRA and two CpG
            islands, complete sequence
          Length = 181103

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  cctccctcccactgctctct 241
            ||||||||||||||||||||
Sbjct: 3221 cctccctcccactgctctct 3202
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>dbj|AK137799.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130010K15 product:unclassifiable, full
            insert sequence
          Length = 4899

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 217  ccccacctccctcccactgctctc 240
            |||| |||||||||||||||||||
Sbjct: 2453 cccctcctccctcccactgctctc 2430
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>gb|AC093484.2| Homo sapiens chromosome , clone RP11-138I1, complete sequence
          Length = 170944

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    cacccccacctccctcccac 233
              ||||||||||||||||||||
Sbjct: 128631 cacccccacctccctcccac 128612
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>gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome 9, complete sequence
          Length = 189253

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 217   ccccacctccctcccactgctctc 240
             |||| |||||||||||||||||||
Sbjct: 85781 cccctcctccctcccactgctctc 85804
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 321      tccgccgccgcgcagggccc 340
                ||||||||||||||||||||
Sbjct: 14315857 tccgccgccgcgcagggccc 14315838
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>gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, complete sequence
          Length = 162554

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   cacccccacctccctcccac 233
             ||||||||||||||||||||
Sbjct: 39855 cacccccacctccctcccac 39836
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>gb|AC084018.28| Homo sapiens 12 BAC RP11-347I19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175754

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    cacccccacctccctcccac 233
              ||||||||||||||||||||
Sbjct: 119716 cacccccacctccctcccac 119697
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>gb|BC035884.1| Homo sapiens, clone IMAGE:4991579, mRNA
          Length = 2995

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  cacccccacctccctcccac 233
            ||||||||||||||||||||
Sbjct: 1734 cacccccacctccctcccac 1715
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>gb|AC091172.11| Homo sapiens chromosome 17, clone RP11-156E6, complete sequence
          Length = 178345

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    cccccacctccctcccactg 235
              ||||||||||||||||||||
Sbjct: 173747 cccccacctccctcccactg 173728
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>dbj|AP003207.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1157F09
          Length = 148802

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   tccgccgccgcgcagggccc 340
             ||||||||||||||||||||
Sbjct: 67134 tccgccgccgcgcagggccc 67115
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>dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0458A05
          Length = 120593

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    tccgccgccgcgcagggccc 340
              ||||||||||||||||||||
Sbjct: 111547 tccgccgccgcgcagggccc 111528
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>emb|BX648084.1|HSM808230 Homo sapiens mRNA; cDNA DKFZp686L016 (from clone DKFZp686L016)
          Length = 6984

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  cacccccacctccctcccac 233
            ||||||||||||||||||||
Sbjct: 1460 cacccccacctccctcccac 1441
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>dbj|AK120976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041L20, full
           insert sequence
          Length = 2032

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 321 tccgccgccgcgcagggccc 340
           ||||||||||||||||||||
Sbjct: 230 tccgccgccgcgcagggccc 249
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>gb|AC154461.2| Mus musculus BAC clone RP24-163I13 from 14, complete sequence
          Length = 202273

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tccacccccacctccctccc 231
             ||||||||||||||||||||
Sbjct: 13450 tccacccccacctccctccc 13431
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>emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on chromosome 14, complete
              sequence
          Length = 201441

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    tccacccccacctccctccc 231
              ||||||||||||||||||||
Sbjct: 182602 tccacccccacctccctccc 182583
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>gb|AC109606.11| Mus musculus strain C57BL/6J chromosome 5 clone rp23-113m20, complete
             sequence
          Length = 210959

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   cacctccctcccactgctct 239
             ||||||||||||||||||||
Sbjct: 88800 cacctccctcccactgctct 88819
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>gb|AC133158.2| Mus musculus BAC clone RP24-491F15 from 8, complete sequence
          Length = 172481

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    tccacccccacctccctccc 231
              ||||||||||||||||||||
Sbjct: 167900 tccacccccacctccctccc 167919
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>gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complete sequence
          Length = 204183

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    tccacccccacctccctccc 231
              ||||||||||||||||||||
Sbjct: 108163 tccacccccacctccctccc 108144
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>emb|AL391834.8| Human DNA sequence from clone RP11-513M16 on chromosome 9, complete
             sequence
          Length = 112713

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    cgaggcgaggcggggcggag 52
             ||||||||||||||||||||
Sbjct: 88406 cgaggcgaggcggggcggag 88425
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>emb|AL672202.9| Mouse DNA sequence from clone RP23-147L19 on chromosome 11, complete
            sequence
          Length = 27506

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 263  cccatcaaaaccctacccag 282
            ||||||||||||||||||||
Sbjct: 9847 cccatcaaaaccctacccag 9866


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,615,017
Number of Sequences: 3902068
Number of extensions: 3615017
Number of successful extensions: 87602
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87354
Number of HSP's gapped (non-prelim): 249
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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